# terms

id: GO:0032700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines.","definition_xrefs":["PMID:16482511","GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-17 production","termid":"GO:0032660"},{"relation_name":"negatively_regulates","term_name":"interleukin-17 production","termid":"GO:0032620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-17 production","secondary_identifiers":["GO:1905077","GO:0045379"],"synonyms":[{"name":"down regulation of interleukin-17 production","type":"exact"},{"name":"downregulation of interleukin-17 production","type":"exact"},{"name":"inhibition of interleukin-17 production","type":"narrow"},{"name":"negative regulation of CTLA-8 production","type":"narrow"},{"name":"negative regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion","type":"exact"},{"name":"negative regulation of IL-17 production","type":"exact"},{"name":"negative regulation of interleukin-17 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-17 secretion","type":"narrow"}],"termid":"GO:0032700"}


id: GO:0097113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glutamate receptor clustering process in which alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["PMID:12796785","GOC:pr","GOC:BHF","GOC:sjp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor clustering","termid":"GO:0097688"},{"relation_name":"part_of","term_name":"postsynaptic membrane organization","termid":"GO:0001941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"AMPA glutamate receptor clustering","synonyms":[{"name":"AMPA receptor clustering","type":"exact"},{"name":"alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering","type":"exact"}],"termid":"GO:0097113"}


id: _global:has_functional_parent
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"'Entity A' has_functional_parent 'Entity B' implies that 'Entity B' has at least one chacteristic group from which 'Entity A' can be derived by functional modification.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_functional_parent","termid":"_global:has_functional_parent"}


id: PBO:0048954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOT2 pseudogene 5","termid":"PBO:0048954"}


id: MONDO:0018977
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polyneuropathy associated with IgM monoclonal gammapathy (MG) with anti-MAG (myelin-associated-glycoprotein) activity is a demyelinating polyneuropathy characterized clinically by sensory ataxia, tremor, paresthesia, and impaired gait.","definition_xrefs":["Orphanet:639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired peripheral neuropathy","termid":"MONDO:0015923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"polyneuropathy associated with IgM monoclonal gammapathy with anti-MAG","secondary_identifiers":["GARD:13173","MEDGEN:1434346","UMLS:C1736154"],"synonyms":[{"name":"anti-MAG neuropathy","type":"exact"},{"name":"neuropathy associated with monoclonal IgM antibodies to myelin-associated glycoprotein","type":"exact"}],"termid":"MONDO:0018977","xrefs":{"Monarch":{"xref_id":"0018977"}}}


id: PBO:0088378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP subunit Snu40","termid":"PBO:0088378"}


id: PBO:0003059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgin subfamily A member","termid":"PBO:0003059"}


id: PBO:0014292
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Casein KInase","termid":"PBO:0014292"}


id: MOD:01189
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["PubMed:12766232","Unimod:212#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-ethyl iodoacetamide-d5","termid":"MOD:00562"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-ethyl iodoacetamide-d5 - site C","synonyms":[{"name":"N-ethyl iodoacetamide-d5","type":"related"},{"name":"NEIAA:2H(5)","type":"related"}],"termid":"MOD:01189"}


id: GO:0002944
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin Kand cyclin-dependent kinase 12 (CDK12). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:22012619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin K-CDK12 complex","synonyms":[{"name":"CycK/Cdk12 complex","type":"related"}],"termid":"GO:0002944"}


id: PBO:0056332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 13","termid":"PBO:0056332"}


id: PBO:0050179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1","termid":"PBO:0050179"}


id: GO:0046903
data:
  {"annotated_genes":["SJAG_03246","SJAG_02368","SJAG_00355","SJAG_03536","SJAG_02320","SJAG_01722","SJAG_03718","SJAG_02753","SJAG_00661","SJAG_03005","SJAG_04966","SJAG_03754","SJAG_03915","SJAG_03499","SJAG_03763","SJAG_04343","SJAG_02366","SJAG_04058","SJAG_07004","SJAG_03864","SJAG_02012","SJAG_01048","SJAG_02518","SJAG_01448","SJAG_04509","SJAG_00280","SJAG_01772","SJAG_00332","SJAG_02572","SJAG_02004","SJAG_01697","SJAG_04960","SJAG_02166","SJAG_03357","SJAG_00430","SJAG_01563","SJAG_01925","SJAG_02587","SJAG_04517","SJAG_04044","SJAG_00826","SJAG_03938"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95874,104679,97041,114967,93158,79941,99462,119204,90408,73341,107101,73406,90768,93485,75261,72644,94032,73011,89999,72344,94280,97008,73925],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006887"},{"annotations":[102201],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045921"},{"annotations":[61918,89908,100407],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0017157"},{"annotations":[94341,120288,77072,81745,71742,60971,92585,82004],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006904"},{"annotations":[103941,67545,60970,119794,92755,116217,90633,101564],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090522"}]},"cv_name":"biological_process","definition":"The controlled release of a substance by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00280":null,"SJAG_00332":null,"SJAG_00355":null,"SJAG_00430":null,"SJAG_00661":null,"SJAG_00826":null,"SJAG_01048":null,"SJAG_01448":null,"SJAG_01563":null,"SJAG_01697":null,"SJAG_01722":null,"SJAG_01772":null,"SJAG_01925":null,"SJAG_02004":null,"SJAG_02012":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_02366":null,"SJAG_02368":null,"SJAG_02518":null,"SJAG_02572":null,"SJAG_02587":null,"SJAG_02753":null,"SJAG_03005":null,"SJAG_03246":null,"SJAG_03357":null,"SJAG_03499":null,"SJAG_03536":null,"SJAG_03718":null,"SJAG_03754":null,"SJAG_03763":null,"SJAG_03864":null,"SJAG_03915":null,"SJAG_03938":null,"SJAG_04044":null,"SJAG_04058":null,"SJAG_04343":null,"SJAG_04509":null,"SJAG_04517":null,"SJAG_04960":null,"SJAG_04966":null,"SJAG_07004":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"secretion","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0046903","terms_by_termid":{"GO:0006887":null,"GO:0006904":null,"GO:0017157":null,"GO:0045921":null,"GO:0090522":null}}


id: PBO:0060391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle organizing protein 1 pseudogene 1","termid":"PBO:0060391"}


id: PBO:0064365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMIS2 transmembrane protein","termid":"PBO:0064365"}


id: FYPO:0006012
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is elongated, and does not form a mating projection under conditions that normally induce shmooing.","definition_xrefs":["PomBase:mah","PMID:28410370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished shmoo formation","termid":"FYPO:0000569"},{"relation_name":"is_a","term_name":"elongated cell during nitrogen starvation","termid":"FYPO:0000998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000301"],"is_obsolete":false,"name":"elongated cell with abolished shmoo formation","synonyms":[{"name":"elongated cell with abolished shmoo formation during nitrogen starvation","type":"exact"},{"name":"elongated non-mated cell","type":"related"},{"name":"large non-mated cells","type":"related"}],"termid":"FYPO:0006012"}


id: GO:0044684
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7,8-dihydromethanopterin + NADPH = 5,6,7,8-tetrahydromethanopterin + NADP.","definition_xrefs":["GOC:mengo_curators","PMID:15028691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dihydromethanopterin reductase activity","secondary_identifiers":["RHEA:42804","EC:1.5.99.15"],"termid":"GO:0044684"}


id: PBO:0062859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otoraplin","termid":"PBO:0062859"}


id: MONDO:0016538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hypotonia-cystinuria syndrome type 1 (obsolete MONDO:0016538)","termid":"MONDO:0016538","xrefs":{"Monarch":{"xref_id":"0016538"}}}


id: PBO:0088031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via ubiquitin-26S proteasome system; essential for cellular stress response; encoded as polyubiquitin precursor comprised of 5 head-to-tail repeats; number of repeats is evolutionarily unstable within and between yeast species; protein abundance increases in response to DNA replication stress; implicated as modulator of replicative lifespan","termid":"PBO:0088031"}


id: PBO:0084391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low complexity protein; mediates inhibition of Mep1p and Mep3p activity; hyperphosphorylated upon rapamycin treatment in a Tap42p-dependent manner; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; phosphorylation and localization regulated by TORC1-effector kinase, Npr1p","termid":"PBO:0084391"}


id: PBO:0081739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 670","termid":"PBO:0081739"}


id: SO:0001730
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_4_acetylation_site","termid":"SO:0001972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H4K5_acetylation_site","synonyms":[{"name":"H4K5 acetylation site","type":"exact"},{"name":"H4K5ac","type":"exact"}],"termid":"SO:0001730"}


id: GO:0019005
data:
  {"annotated_genes":["SJAG_00192","SJAG_00341","SJAG_00615","SJAG_00439","SJAG_01022","SJAG_02044","SJAG_03651","SJAG_02822","SJAG_03219","SJAG_02162","SJAG_02651","SJAG_02591"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[61491,76022,82287,90571,97553,104885],"is_not":false,"summary":null,"term":"GO:0019005"},{"annotations":[96355,111117,99782,112368,92608,106891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043224"}]},"cv_name":"cellular_component","definition":"A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1).","definition_xrefs":["PMID:15571813","PMID:15688063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cullin-RING ubiquitin ligase complex","termid":"GO:0031461"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00341":null,"SJAG_00439":null,"SJAG_00615":null,"SJAG_01022":null,"SJAG_02044":null,"SJAG_02162":null,"SJAG_02591":null,"SJAG_02651":null,"SJAG_02822":null,"SJAG_03219":null,"SJAG_03651":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SCF ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Wikipedia:SCF_complex"],"synonyms":[{"name":"CDL1 complex","type":"exact"},{"name":"CRL1 complex","type":"exact"},{"name":"Cul1-RING ubiquitin ligase complex","type":"exact"},{"name":"SCF complex","type":"exact"},{"name":"SCF complex substrate recognition subunit","type":"narrow"},{"name":"Skp1/Cul1/F-box protein complex","type":"exact"},{"name":"cullin-RING ligase 1","type":"exact"}],"termid":"GO:0019005","terms_by_termid":{"GO:0019005":null,"GO:0043224":null}}


id: MONDO:0008894
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cataract-hypertrichosis-intellectual disability syndrome is characterized by congenital cataract, generalized hypertrichosis and intellectual deficit. It has been described in two Egyptian sibs born to consanguineous parents. It is transmitted as an autosomal recessive trait.","definition_xrefs":["Orphanet:1375"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hypertrichosis","termid":"MONDO:0019280"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"cataract-hypertrichosis-intellectual disability syndrome","secondary_identifiers":["GARD:1052","MEDGEN:167117","SCTID:722379001","UMLS:C0796282","OMIM:211770","MESH:C537959"],"synonyms":[{"name":"CAHMR syndrome","type":"exact"},{"name":"cataract, hypertrichosis, intellectual disability syndrome","type":"related"},{"name":"cataract, hypertrichosis, mental retardation syndrome","type":"related"}],"termid":"MONDO:0008894","xrefs":{"Monarch":{"xref_id":"0008894"}}}


id: PBO:0069088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 335, pseudogene","termid":"PBO:0069088"}


id: PBO:0063319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCNA clamp associated factor","termid":"PBO:0063319"}


id: MONDO:0009510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Laron syndrome with immunodeficiency (obsolete MONDO:0009510)","termid":"MONDO:0009510","xrefs":{"Monarch":{"xref_id":"0009510"}}}


id: PBO:0083576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps YDR134C","termid":"PBO:0083576"}


id: GO:0032977
data:
  {"annotated_genes":["SJAG_03633","SJAG_01496","SJAG_02437","SJAG_00277","SJAG_05300","SJAG_05302","SJAG_01127","SJAG_02065","SJAG_02361","SJAG_00569","SJAG_01940","SJAG_01178"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76432,80489,80549,89932,96848,105527,106810,112460,113059,113848,114311,116189],"is_not":false,"summary":null,"term":"GO:0032977"}]},"cv_name":"molecular_function","definition":"Binds transmembrane domain-containing proteins and mediates their integration into a membrane.","definition_xrefs":["PMID:14739936","PMID:29809151","PMID:30415835","PMID:32459176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein carrier chaperone","termid":"GO:0140597"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00277":null,"SJAG_00569":null,"SJAG_01127":null,"SJAG_01178":null,"SJAG_01496":null,"SJAG_01940":null,"SJAG_02065":null,"SJAG_02361":null,"SJAG_02437":null,"SJAG_03633":null,"SJAG_05300":null,"SJAG_05302":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"},{"rel_name":"is_a","termid":"GO:0140597"}],"interesting_parent_ids":["GO:0003674","GO:0140104","GO:0140597"],"is_obsolete":false,"name":"membrane insertase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1307803","Reactome:R-HSA-9906955","Reactome:R-HSA-1268025","Reactome:R-HSA-1299482","Reactome:R-HSA-9902096"],"termid":"GO:0032977","terms_by_termid":{"GO:0032977":null}}


id: PBO:0045458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DR1 associated protein 1","termid":"PBO:0045458"}


id: PBO:0051945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPK1 antisense RNA 1","termid":"PBO:0051945"}


id: GO:0039502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:sp","PMID:26712804","GOC:bf","PMID:19802576","PMID:32464097","PMID:32733001","PMID:33097660","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host interferon-mediated signaling pathway","termid":"GO:0140886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host type I interferon-mediated signaling pathway","secondary_identifiers":["VZ:883"],"synonyms":[{"name":"inhibition of host interferon signaling pathway by virus","type":"related"},{"name":"negative regulation by virus of host type I interferon-mediated signaling pathway","type":"exact"},{"name":"suppression by virus of host type I IFN-mediated signaling pathway","type":"exact"},{"name":"suppression by virus of host type I interferon-mediated signaling pathway","type":"narrow"},{"name":"suppression by virus of host type I interferon-mediated signalling pathway","type":"exact"}],"termid":"GO:0039502"}


id: PBO:0044319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c1","termid":"PBO:0044319"}


id: PBO:0108590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Morf4 family associated protein 1 like 2","termid":"PBO:0108590"}


id: PBO:0061034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar pre-rRNA processing protein NIP7","termid":"PBO:0061034"}


id: PBO:0047366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FBXL19 antisense RNA 1","termid":"PBO:0047366"}


id: PBO:0057692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1282","termid":"PBO:0057692"}


id: MONDO:1011241
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microphthalmia, non-human animal","termid":"MONDO:1010324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia, cattle","secondary_identifiers":["OMIA:000649-9913"],"termid":"MONDO:1011241","xrefs":{"Monarch":{"xref_id":"1011241"}}}


id: GO:1904148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonylphenol stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:19260726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to nonylphenol","termid":"GO:1904147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nonylphenol","termid":"GO:1904148"}


id: PBO:0109813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein Mdm31, mitochondrion inheritance factor, interacts with ERMES","termid":"PBO:0109813"}


id: GO:0042747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A stage in the circadian sleep cycle during which dreams occur and the body undergoes marked changes including rapid eye movement, loss of reflexes, and increased pulse rate and brain activity.","definition_xrefs":["ISBN:0395825172","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circadian sleep/wake cycle process","termid":"GO:0022410"},{"relation_name":"part_of","term_name":"circadian sleep/wake cycle, sleep","termid":"GO:0050802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"circadian sleep/wake cycle, REM sleep","termid":"GO:0042747"}


id: MONDO:0700256
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any type 1 interferonopathies in which the cause of the disease is a variation in the TREX1 gene. Individuals with variants in TREX1 can present with a variety of phenotypes, including Aicardi-Goutieres syndrome, chilblain lupus, or retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"type 1 interferonopathy","termid":"MONDO:0700264"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX1-related type 1 interferonopathy","termid":"MONDO:0700256","xrefs":{"Monarch":{"xref_id":"0700256"}}}


id: PBO:0041681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium dependent secretion activator 2","termid":"PBO:0041681"}


id: PBO:0120149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates homeostasis of plasma membrane (PM) tension and cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis; PM retention is dependent on Avo3p; malonyl-CoA is a direct ATP-competitive inhibitor of TORC1; TOR2 has a paralog, TOR1, that arose from the whole genome duplication","termid":"PBO:0120149"}


id: GO:0140297
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DNA-binding transcription factor, a protein that interacts with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription.","definition_xrefs":["GOC:txnOH-2018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor binding","termid":"GO:0008134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"DNA-binding transcription factor binding","secondary_identifiers":["GO:0033613","GO:0070491","GO:0001107"],"synonyms":[{"name":"activating transcription factor binding","type":"related"},{"name":"repressing transcription factor binding","type":"related"},{"name":"transcription activator binding","type":"related"}],"termid":"GO:0140297"}


id: PBO:0068349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 126","termid":"PBO:0068349"}


id: GO:0051031
data:
  {"annotated_genes":["SJAG_03358","SJAG_02661","SJAG_03156","SJAG_04622","SJAG_00178","SJAG_04083"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80507,107775,74107,107304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006409"},{"annotations":[81092],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016031"},{"annotations":[81488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of tRNA, transfer ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA transport","termid":"GO:0050658"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_02661":null,"SJAG_03156":null,"SJAG_03358":null,"SJAG_04083":null,"SJAG_04622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"tRNA transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0051031","terms_by_termid":{"GO:0006409":null,"GO:0016031":null,"GO:0071528":null}}


id: GO:1903478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any actin filament bundle convergence that is involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GOC:vw","GOC:mtg_cell_cycle","GOC:TermGenie","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete actin filament bundle convergence involved in mitotic contractile ring assembly (obsolete GO:1903478)","synonyms":[{"name":"actin filament bundle convergence involved in actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"exact"},{"name":"actin filament bundle convergence involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"actin filament bundle convergence involved in cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"actin filament bundle convergence involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903478"}


id: GO:0000120
data:
  {"annotated_genes":["SJAG_04083","SJAG_04766","SJAG_00692","SJAG_05331","SJAG_00421","SJAG_02747","SJAG_02813","SJAG_00202"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[97587],"is_not":false,"summary":null,"term":"GO:0000120"},{"annotations":[81182,81811,77675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070860"},{"annotations":[74040,95183,107301,81121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000500"}]},"cv_name":"cellular_component","definition":"A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase I.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator complex","termid":"GO:0005667"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00202":null,"SJAG_00421":null,"SJAG_00692":null,"SJAG_02747":null,"SJAG_02813":null,"SJAG_04083":null,"SJAG_04766":null,"SJAG_05331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005730","GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"RNA polymerase I transcription regulator complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"RNA polymerase I transcription factor complex","type":"narrow"}],"termid":"GO:0000120","terms_by_termid":{"GO:0000120":null,"GO:0000500":null,"GO:0070860":null}}


id: FYPO:0003354
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the glycan moiety of a glycoprotein contains a lower amount of galactose residues than normal. In wild-type cells, glycoprotein glycans contain mannose and galactose residues in a 1:1.2 ratio, and the galactose residues are connected by alpha-1,2 linkages.","definition_xrefs":["PomBase:mah","PMID:8782411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glycoprotein glycan structure","termid":"FYPO:0003290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0003290"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0003290","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased galactose level in glycoprotein glycan","synonyms":[{"name":"decreased galactose level in glycoprotein oligosaccharide","type":"related"},{"name":"decreased level of alpha 1,2-linked galactose residues in glycoprotein glycan","type":"exact"},{"name":"decreased protein glycan galactosylation","type":"related"},{"name":"reduced galactose level in glycoprotein glycan","type":"exact"}],"termid":"FYPO:0003354"}


id: FYPO:0007410
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more residues within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II is abnormal.","definition_xrefs":["PomBase:mah","GO:0070816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation","termid":"FYPO:0002677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal RNA polymerase II C-terminal domain phosphorylation","synonyms":[{"name":"abnormal phosphorylation of RNA polymerase II C-terminal domain","type":"exact"}],"termid":"FYPO:0007410"}


id: PBO:0057225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 381","termid":"PBO:0057225"}


id: GO:0006654
data:
  {"annotated_genes":["SJAG_02654","SJAG_01519","SJAG_01036","SJAG_04883","SJAG_01957","SJAG_04323","SJAG_04319"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63346,73056,73444,73618,79706,95067,106915],"is_not":false,"summary":null,"term":"GO:0006654"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidic acid metabolic process","termid":"GO:0046473"},{"relation_name":"is_a","term_name":"glycerophospholipid biosynthetic process","termid":"GO:0046474"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_01519":null,"SJAG_01957":null,"SJAG_02654":null,"SJAG_04319":null,"SJAG_04323":null,"SJAG_04883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidic acid biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1483166"],"synonyms":[{"name":"phosphatidic acid anabolism","type":"exact"},{"name":"phosphatidic acid biosynthesis","type":"exact"},{"name":"phosphatidic acid formation","type":"exact"},{"name":"phosphatidic acid synthesis","type":"exact"}],"termid":"GO:0006654","terms_by_termid":{"GO:0006654":null}}


id: PBO:0062641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily K member 2 pseudogene","termid":"PBO:0062641"}


id: GO:1905630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glyceraldehyde stimulus.","definition_xrefs":["PMID:11377826","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to monosaccharide","termid":"GO:0034284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to glyceraldehyde","termid":"GO:1905630"}


id: PBO:0068628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 8, pseudogene","termid":"PBO:0068628"}


id: PBO:0038644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 12","termid":"PBO:0038644"}


id: GO:0036476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process that results in permanent cessation of all vital functions of a neuron upon exposure to hydrogen peroxide (H2O2).","definition_xrefs":["GOC:bf","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete neuron death in response to hydrogen peroxide (obsolete GO:0036476)","synonyms":[{"name":"hydrogen peroxide-induced neuron death","type":"exact"},{"name":"neuron death in response to H2O2","type":"exact"},{"name":"neuronal cell death in response to hydrogen peroxide","type":"exact"}],"termid":"GO:0036476"}


id: MONDO:0800377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ACTH-independent Cushing syndrome","termid":"MONDO:0020529"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTH-independent adrenal Cushing syndrome, somatic","termid":"MONDO:0800377","xrefs":{"Monarch":{"xref_id":"0800377"}}}


id: GO:0140883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont initiates, promotes, or enhances the normal execution of host reticulophagy, leading to an increase in the frequency, rate or extent of reticulophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:35239449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated activation of host autophagy","termid":"GO:0039520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated activation of host reticulophagy","synonyms":[{"name":"activation of host reticulophagy by virus","type":"exact"},{"name":"induction by virus of host reticulophagy","type":"narrow"},{"name":"positive regulation by virus of host reticulophagy","type":"broad"}],"termid":"GO:0140883"}


id: PBO:0041849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent serine protein kinase pseudogene 1","termid":"PBO:0041849"}


id: GO:0034899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N,N,N-trimethylamine + NADPH + H+ + O2 = N,N,N-trimethylamine N-oxide + NADP+ + H2O.","definition_xrefs":["EC:1.14.13.148","UM-BBD_reactionID:r1407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"trimethylamine monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R05623","RHEA:31979"],"termid":"GO:0034899"}


id: PBO:0048906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member A","termid":"PBO:0048906"}


id: MONDO:0019932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated partial vaginal agenesis is a rare, non-syndromic urogenital tract malformation characterized by the absence of a vagina or the presence of a vaginal dimple shorter than 5 cm. It is often associated with uterine agenesis, hematocolpos or primary amenorrhea and dyspareunia. Ovaries and fallopian tubes are normal.","definition_xrefs":["Orphanet:96269"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated partial vaginal agenesis","secondary_identifiers":["ICD10CM:Q52.0","MEDGEN:687783","SCTID:87380008","icd11.foundation:15782","UMLS:C1261251","GARD:19347"],"synonyms":[{"name":"congenital absence of vagina","type":"exact"}],"termid":"MONDO:0019932","xrefs":{"Monarch":{"xref_id":"0019932"}}}


id: PBO:0086744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; possibly involved in zinc homeostasis; Bdf1p-dependent transcription induced by salt stress; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus","termid":"PBO:0086744"}


id: GO:1901692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of compound eye retinal cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","PMID:12021768","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"regulates","term_name":"compound eye retinal cell apoptotic process","termid":"GO:1990010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of compound eye retinal cell apoptotic process","termid":"GO:1901692"}


id: GO:0007432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland.","definition_xrefs":["PMID:11598957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of animal organ boundary","termid":"GO:0010160"},{"relation_name":"part_of","term_name":"salivary gland development","termid":"GO:0007431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"salivary gland boundary specification","synonyms":[{"name":"salivary gland determination","type":"exact"}],"termid":"GO:0007432"}


id: PATO:0000954
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Red color having medium to high brightness and low to moderate saturation.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red","termid":"PATO:0000322"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pink","termid":"PATO:0000954"}


id: PBO:0039723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein B mRNA editing enzyme catalytic subunit 3D","termid":"PBO:0039723"}


id: MONDO:0014007
data:
  {"annotated_genes":["SJAG_04380"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87243],"is_not":false,"summary":null,"term":"MONDO:0014007"}]},"cv_name":"mondo","definition":"Any Aicardi-Goutieres syndrome in which the cause of the disease is a mutation in the ADAR gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Aicardi-Goutieres syndrome","termid":"MONDO:0018866"},{"relation_name":"is_a","term_name":"ADAR-related type 1 interferonopathy","termid":"MONDO:0700261"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"Aicardi-Goutieres syndrome 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200898","OMIM:615010","UMLS:C3539013","GARD:15894","MEDGEN:761287"],"synonyms":[{"name":"ADAR Aicardi-Goutieres syndrome","type":"exact"},{"name":"AGS6","type":"related"},{"name":"Adar Aicardi-Goutieres syndrome","type":"exact"},{"name":"Aicardi-Goutieres syndrome 6","type":"exact"},{"name":"Aicardi-Goutieres syndrome caused by mutation in ADAR","type":"exact"},{"name":"Aicardi-Goutieres syndrome caused by mutation in Adar","type":"exact"},{"name":"Aicardi-Goutieres syndrome type 6","type":"exact"}],"termid":"MONDO:0014007","terms_by_termid":{"MONDO:0014007":null},"xrefs":{"Monarch":{"xref_id":"0014007"}}}


id: MONDO:0042967
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rheumatologic disorder that involves the mitral valve.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitral valve disorder","termid":"MONDO:0003767"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"rheumatic disease of mitral valve","secondary_identifiers":["SCTID:83898004","UMLS:C0264765","MEDGEN:538824"],"synonyms":[{"name":"mitral valve rheumatologic disorder","type":"exact"},{"name":"rheumatic disease of mitral valve","type":"exact"},{"name":"rheumatic mitral valve changes","type":"related"},{"name":"rheumatic mitral valve disease","type":"related"},{"name":"rheumatologic disorder of mitral valve","type":"exact"}],"termid":"MONDO:0042967","xrefs":{"Monarch":{"xref_id":"0042967"}}}


id: PBO:0064588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POTE ankyrin domain family member H","termid":"PBO:0064588"}


id: PBO:0003282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex assembly protein Cbp6 (predicted)","termid":"PBO:0003282"}


id: SO:0000243
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome_entry_site","termid":"SO:0000139"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal_ribosome_entry_site","secondary_identifiers":["http://en.wikipedia.org/wiki/Internal_ribosome_entry_site"],"synonyms":[{"name":"IRES","type":"exact"},{"name":"internal ribosomal entry sequence","type":"exact"},{"name":"internal ribosomal entry site","type":"exact"},{"name":"internal ribosome entry sequence","type":"related"},{"name":"internal ribosome entry site","type":"exact"}],"termid":"SO:0000243"}


id: GO:0016158
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate.","definition_xrefs":["EC:3.1.3.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol hexakisphosphate phosphatase activity","termid":"GO:0004446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"inositol hexakisphosphate 3-phosphatase activity","secondary_identifiers":["MetaCyc:RXN0-1001","RHEA:16989"],"synonyms":[{"name":"1-phytase activity","type":"related"},{"name":"3-phytase activity","type":"exact"},{"name":"myo-inositol-hexakisphosphate 3-phosphohydrolase activity","type":"related"},{"name":"myo-inositol-hexaphosphate 3-phosphohydrolase activity","type":"exact"},{"name":"phytase activity","type":"broad"},{"name":"phytate 1-phosphatase activity","type":"related"},{"name":"phytate 3-phosphatase activity","type":"exact"}],"termid":"GO:0016158"}


id: PBO:0074665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 51","termid":"PBO:0074665"}


id: GO:0002175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular protein localization process in which a protein is transported to, or maintained at, the paranode region of an axon.","definition_xrefs":["PMID:18803321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to axon","termid":"GO:0099612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to paranode region of axon","synonyms":[{"name":"protein localisation to paranode region of axon","type":"exact"}],"termid":"GO:0002175"}


id: PBO:0027852
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_resection_during_replication_fork_processing","termid":"PBO:0027852"}


id: FYPO:0006577
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of P(1),P(4)-bis(5'-adenosyl) tetraphosphate (Ap4A) measured in a cell is higher than normal.","definition_xrefs":["PMID:10970777","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular P(1),P(4)-bis(5'-adenosyl) tetraphosphate level","synonyms":[{"name":"increased P(1),P(4)-bis(5'-adenosyl) tetraphosphate accumulation","type":"related"},{"name":"increased cellular Ap4A level","type":"exact"},{"name":"increased cellular P(1),P(4)-bis(5'-adenosyl) tetraphosphate level during mitotic cell cycle","type":"related"},{"name":"increased cellular P(1),P(4)-bis(5'-adenosyl) tetraphosphate level during vegetative growth","type":"exact"},{"name":"increased cellular diadenosine 5',5'''-P1,P4-tetraphosphate level","type":"related"},{"name":"increased cellular diadenosine tetraphosphate level","type":"related"},{"name":"increased cellular diadenosyl tetraphosphate level","type":"broad"}],"termid":"FYPO:0006577"}


id: GO:0048573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.","definition_xrefs":["ISBN:0709408862","GOC:jid","GOC:pj","ISBN:0582015952","ISBN:0697037754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoperiodism","termid":"GO:0009648"},{"relation_name":"part_of","term_name":"vegetative to reproductive phase transition of meristem","termid":"GO:0010228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoperiodism, flowering","synonyms":[{"name":"photoperiodic control of flowering time","type":"exact"},{"name":"photoperiodic control of inflorescence development","type":"exact"},{"name":"response to day length, flowering","type":"exact"},{"name":"response to night length, flowering","type":"exact"},{"name":"response to photoperiod, flowering","type":"exact"}],"termid":"GO:0048573"}


id: PBO:0003538
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.2.10","termid":"PBO:0003538"}


id: PBO:0085549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; homologous to mammalian ribosomal protein S14 and bacterial S11; RPS14B has a paralog, RPS14A, that arose from the whole genome duplication","termid":"PBO:0085549"}


id: MONDO:0015259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachydactyly-mesomelia-intellectual disability-heart defects syndrome is a rare, genetic, multiple congenital anomalies/dysmorphic syndrome characterized by developmental delay, intellectual disability, thin habitus with narrow shoulders, mesomelic shortness of the arms, craniofacial dysmorphism (e.g. long lower face, maxillary hypoplasia, beak nose, short columella, prognathia, high arched palate, obtuse mandibular angle), brachydactyly (mostly involving middle phalanges) and cardiovascular anomalies (i.e. aortic root dilatation, mitral valve prolapse).","definition_xrefs":["Orphanet:1277"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly-mesomelia-intellectual disability-heart defects syndrome","secondary_identifiers":["UMLS:C4707567","GARD:5036","MEDGEN:1645467"],"synonyms":[{"name":"Stratton-Garcia-Young syndrome","type":"exact"},{"name":"brachydactyly mesomelia intellectual disability aortic dilatation mitral valve prolapse and characteristic face","type":"related"},{"name":"brachydactyly mesomelia mental retardation aortic dilatation mitral valve prolapse and characteristic face","type":"related"}],"termid":"MONDO:0015259","xrefs":{"Monarch":{"xref_id":"0015259"}}}


id: PBO:0036530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl4","termid":"PBO:0036530"}


id: MONDO:1010767
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vitiligo that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitiligo, non-human animal","termid":"MONDO:1010136"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitiligo, horse","secondary_identifiers":["OMIA:001055-9796"],"termid":"MONDO:1010767","xrefs":{"Monarch":{"xref_id":"1010767"}}}


id: FYECO:0000197
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which nickel was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping limited","termid":"FYECO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ limited nickel","termid":"FYECO:0000197"}


id: MONDO:0022402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder of neuronal migration that is characterized by abnormal cortex morphology, with pathological features including a variably decreased brain size, enlarged ventricles representing a stage of fetal development rather than hydrocephalus, heterotopia of the inferior olivary bodies that lie between the corpus pontobulbare and their normal location, aberrant or absent corticospinal tract, heterotopia of cerebellar granules and abnormally shaped dentate nuclei.","definition_xrefs":["PMID:2063992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"agyria-pachygyria type 1","secondary_identifiers":["NANDO:1201069","NANDO:1201068"],"synonyms":[{"name":"Bielchowsky type of lissencephaly","type":"exact"},{"name":"type I lissencephaly","type":"exact"}],"termid":"MONDO:0022402","xrefs":{"Monarch":{"xref_id":"0022402"}}}


id: GO:0009815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O2 = CO2 + dehydroascorbate + ethylene + 2 H2O + hydrogen cyanide. Ethene is also known as ethylene.","definition_xrefs":["RHEA:23640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate oxidase activity","secondary_identifiers":["EC:1.14.17.4","MetaCyc:ETHYL-RXN","KEGG_REACTION:R07214"],"synonyms":[{"name":"1-aminocyclopropane-1-carboxylate oxygenase (ethylene-forming)","type":"related"},{"name":"ACC oxidase activity","type":"exact"},{"name":"aminocyclopropanecarboxylate oxidase activity","type":"related"},{"name":"ethene-forming enzyme","type":"broad"},{"name":"ethylene-forming enzyme","type":"broad"}],"termid":"GO:0009815"}


id: MONDO:1012561
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial fission encephalopathy, non-human animal","termid":"MONDO:1011723"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fission encephalopathy, dog","secondary_identifiers":["OMIA:002551-9615"],"termid":"MONDO:1012561","xrefs":{"Monarch":{"xref_id":"1012561"}}}


id: PBO:0072003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 5","termid":"PBO:0072003"}


id: PBO:0073686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signaling threshold regulating transmembrane adaptor 1","termid":"PBO:0073686"}


id: GO:0039522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the normal movement of mRNA from the nucleus to the cytoplasm of the host cell, leading to shutoff of host protein expression. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:bf","GOC:sp","PMID:22334672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host gene expression","termid":"GO:0039657"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host intracellular transport","termid":"GO:0052038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host mRNA export from nucleus","secondary_identifiers":["VZ:902"],"synonyms":[{"name":"inhibition by virus of host mRNA nuclear export","type":"narrow"},{"name":"inhibition of host mRNA nuclear export by virus","type":"narrow"},{"name":"negative regulation by virus of host mRNA nuclear export","type":"broad"},{"name":"suppression by virus of host mRNA export from nucleus","type":"narrow"},{"name":"suppression of host mRNA nuclear export by virus","type":"narrow"}],"termid":"GO:0039522"}


id: PBO:0048839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulysin","termid":"PBO:0048839"}


id: PBO:0061927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily J member 1","termid":"PBO:0061927"}


id: GO:0009415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to acid chemical","termid":"GO:0001101"},{"relation_name":"is_a","term_name":"response to abiotic stimulus","termid":"GO:0009628"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to water","synonyms":[{"name":"response to water stimulus","type":"exact"}],"termid":"GO:0009415"}


id: GO:0170023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an ion by a channel that opens when a specific soluble sweet compound has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["PMID:24474785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ionotropic taste receptor activity","termid":"GO:0170021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ionotropic sweet taste receptor activity","termid":"GO:0170023"}


id: GO:0034256
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 71-hydroxychlorophyll(ide) a + NAD(P)+ = chlorophyll(ide) b + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.294","MetaCyc:RXN-7678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"chlorophyll(ide) b reductase activity","synonyms":[{"name":"Chl b reductase activity","type":"exact"},{"name":"chlorophyll b reductase activity","type":"exact"},{"name":"chlorophyllide b reductase activity","type":"exact"}],"termid":"GO:0034256"}


id: MONDO:1010913
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Muscular dystrophy that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy, non-human animal","termid":"MONDO:0024965"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular dystrophy, sheep","secondary_identifiers":["OMIA:000679-9940"],"termid":"MONDO:1010913","xrefs":{"Monarch":{"xref_id":"1010913"}}}


id: PBO:0047025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A28, pseudogene","termid":"PBO:0047025"}


id: MONDO:0013870
data:
  {"annotated_genes":["SJAG_04096"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88135],"is_not":false,"summary":null,"term":"MONDO:0013870"}]},"cv_name":"mondo","definition":"TMEM165-CDG is a form of congenital disorders of N-linked glycosylation characterized by a psychomotor delay-dysmorphism (pectus carinatum, dorsolumbar kyphosis and severe sinistroconvex scoliosis, short distal phalanges, genua vara, pedes planovalgi syndrome) with postnatal growth deficiency and major spondylo-, epi-, and metaphyseal skeletal involvement. Additional features include facial dysmorphism (midface hypoplasia, internal strabism of the right eye, low-set ears, moderately high arched palate, small teeth), nephrotic syndrome, cardiac defects, and feeding problems. The disease is caused by mutations in the gene TMEM165 (4q12).","definition_xrefs":["Orphanet:314667"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type II","termid":"MONDO:0005501"},{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"TMEM165-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:614727","UMLS:C3553571","MEDGEN:766485","DOID:0070263","GARD:12413","SCTID:732252005"],"synonyms":[{"name":"CDG IIk","type":"related"},{"name":"CDG syndrome type IIk","type":"exact"},{"name":"CDG-IIk","type":"exact"},{"name":"CDG2K","type":"exact"},{"name":"TMEM165-CDG","type":"exact"},{"name":"TMEM165-CDG (CDG-IIk)","type":"related"},{"name":"TMEM165-congenital disorder of glycosylation","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type IIk","type":"exact"},{"name":"congenital disorder of glycosylation type 2k","type":"exact"},{"name":"congenital disorder of glycosylation type IIk","type":"exact"},{"name":"congenital disorder of glycosylation, type IIk","type":"related"}],"termid":"MONDO:0013870","terms_by_termid":{"MONDO:0013870":null},"xrefs":{"Monarch":{"xref_id":"0013870"}}}


id: MONDO:0006168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete common hematopoietic neoplasm (obsolete MONDO:0006168)","termid":"MONDO:0006168","xrefs":{"Monarch":{"xref_id":"0006168"}}}


id: PBO:0045683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 3","termid":"PBO:0045683"}


id: GO:0036530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of methylglyoxal from a glycated protein, to form lactate and a deglycated protein.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:25416785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylglyoxal metabolic process","termid":"GO:0009438"},{"relation_name":"is_a","term_name":"lactate biosynthetic process","termid":"GO:0019249"},{"relation_name":"is_a","term_name":"protein deglycation","termid":"GO:0036525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"protein deglycation, methylglyoxal removal","synonyms":[{"name":"protein deglycation of methylglyoxal-glycated protein","type":"related"}],"termid":"GO:0036530"}


id: MONDO:0016166
data:
  {"annotated_genes":["SJAG_01151"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007767"},{"annotations":[87645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007768"}]},"cv_name":"mondo","definition":"An instance of hyperparathyroidism that is caused by an inherited genomic modification in an individual.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperparathyroidism","termid":"MONDO:0001741"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01151":null},"genotype_count":0,"is_obsolete":false,"name":"hereditary hyperparathyroidism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:208596","OMIMPS:145000","UMLS:C5680826","GARD:20408","MEDGEN:1843372"],"synonyms":[{"name":"genetic hyperparathyroidism","type":"exact"}],"termid":"MONDO:0016166","terms_by_termid":{"MONDO:0007767":null,"MONDO:0007768":null},"xrefs":{"Monarch":{"xref_id":"0016166"}}}


id: MONDO:0017779
data:
  {"annotated_genes":["SJAG_02949"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012221"},{"annotations":[87153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012222"}]},"cv_name":"mondo","definition":"Alpha-N-acetylgalactosaminidase (NAGA) deficiency is a very rare lysosomal storage disease that is clinically and pathologically heterogeneous and is characterized by deficient NAGA activity.","definition_xrefs":["Orphanet:3137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharidosis","termid":"MONDO:0019251"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02949":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"alpha-N-acetylgalactosaminidase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1647881428","NORD:1693","NANDO:1200134","UMLS:C5848084","MEDGEN:1845666","ICD9:277.89","DOID:0112317","SCTID:238048001","GARD:16621"],"synonyms":[{"name":"NAGA deficiency","type":"exact"},{"name":"Schindler disease","type":"exact"},{"name":"alpha-N-acetylgalactosaminidase activity disease","type":"exact"},{"name":"disorder of alpha-N-acetylgalactosaminidase activity","type":"exact"}],"termid":"MONDO:0017779","terms_by_termid":{"MONDO:0012221":null,"MONDO:0012222":null},"xrefs":{"Monarch":{"xref_id":"0017779"}}}


id: FYPO:0005882
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of gamma-glutamyl-2-aminobutyrate (also called gamma-Glu-Abu) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular gamma-glutamyl-2-aminobutyrate level","synonyms":[{"name":"increased cellular gamma-Glu-Abu level","type":"related"},{"name":"increased cellular gamma-Glu-Abu(1-) level","type":"exact"},{"name":"increased cellular gamma-glutamyl-2-aminobutyrate level during mitotic cell cycle","type":"related"},{"name":"increased cellular gamma-glutamyl-2-aminobutyrate level during vegetative growth","type":"exact"},{"name":"increased gamma-glutamyl-2-aminobutyrate accumulation","type":"related"}],"termid":"FYPO:0005882"}


id: PBO:0054473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1873","termid":"PBO:0054473"}


id: MONDO:0005013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive morphologic variant of chondrosarcoma. It is composed of a low grade chondrosarcoma and a high grade non-cartilagenous sarcomatous component. Due to the aggressive nature of the disease, its prognosis is poor.","definition_xrefs":["NCIT:C6476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone chondrosarcoma","termid":"MONDO:0000515"},{"relation_name":"is_a","term_name":"bone sarcoma","termid":"MONDO:0021054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"dedifferentiated chondrosarcoma","secondary_identifiers":["DOID:0081247","ONCOTREE:DDCHS","EFO:0000394","UMLS:C0862878","ICDO:9243/3","MEDGEN:209021"],"synonyms":[{"name":"DDCHS","type":"related"},{"name":"Dedifferentiated chondrosarcoma","type":"exact"}],"termid":"MONDO:0005013","xrefs":{"Monarch":{"xref_id":"0005013"}}}


id: GO:0036437
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An Isw1 complex that binds DNA and has nucleosome-stimulated ATPase activity. In S. cerevisiae, contains an Isw1p ATPase subunit in complex with Ioc2p and Ioc4p.","definition_xrefs":["GOC:jd","PMID:12482963"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Isw1 complex","termid":"GO:0016587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005694","GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Isw1b complex","termid":"GO:0036437"}


id: PBO:0004081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoheme IX farnesyltransferase (predicted)","termid":"PBO:0004081"}


id: PBO:0080043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 29","termid":"PBO:0080043"}


id: PBO:0052958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kynurenine aminotransferase 1","termid":"PBO:0052958"}


id: GO:0060709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a glycogen cell of the placenta. A glycogen cell is a vacuolated glycogen-rich cell that appears in compact cell islets of the spongiotrophoblast layer.","definition_xrefs":["PMID:16269175","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in embryonic placenta development","termid":"GO:0060706"},{"relation_name":"part_of","term_name":"spongiotrophoblast layer development","termid":"GO:0060712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycogen cell differentiation involved in embryonic placenta development","termid":"GO:0060709"}


id: SOFP:status
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"Annotation workflow status","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"status","termid":"SOFP:status"}


id: PBO:0065607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A1 pseudogene 1","termid":"PBO:0065607"}


id: PBO:0074993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-4","termid":"PBO:0074993"}


id: PBO:0013788
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TPS1","termid":"PBO:0013788"}


id: FYPO:0002327
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a sterol measured in a cell is higher than normal. A sterol is any natural product derived from the steroid skeleton and containing a hydroxy group in the 3 position, closely related to cholestan-3-ol.","definition_xrefs":["CHEBI:15889","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"},{"relation_name":"is_a","term_name":"altered cellular sterol level","termid":"FYPO:0002325"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular sterol level","synonyms":[{"name":"increased cellular sterol level during mitotic cell cycle","type":"related"},{"name":"increased cellular sterol level during vegetative growth","type":"exact"},{"name":"increased sterol level","type":"exact"}],"termid":"FYPO:0002327"}


id: MONDO:0003415
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemoglobin d disease (obsolete MONDO:0003415)","termid":"MONDO:0003415","xrefs":{"Monarch":{"xref_id":"0003415"}}}


id: MONDO:0000815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A specific developmental disorder that is characterized by physical, behavioral and learning birth defects resulting from maternal ingestion of nicotine during pregnancy.","definition_xrefs":["DOID:0060606","PMID:20363831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific developmental disorder","termid":"MONDO:0000592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetal nicotine spectrum disorder","termid":"MONDO:0000815","xrefs":{"Monarch":{"xref_id":"0000815"}}}


id: PBO:0113382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative membrane protein; upregulated by toxic concentrations of heavy metal ions including Mn2+, Co2+, Ni2+, Cu2+, and Zn2+; mRNA identified as translated by ribosome profiling data; localizes to the cytoplasm, possibly in intracellular membranes; CYSTM (cysteine-rich transmembrane module) family member; partially overlaps dubious ORF YBR056C-B; YBR056W-A has a paralog, YDR034W-B, that arose from the whole genome duplication","termid":"PBO:0113382"}


id: PBO:0034032
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_message_for_curators","termid":"PBO:0034032"}


id: GO:1905501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The disaggregation of a heteroreceptor complex into its constituent components.","definition_xrefs":["GOC:pad","GO_REF:0000079","PMID:24157794","GOC:PARL","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete heteroreceptor complex disassembly (obsolete GO:1905501)","termid":"GO:1905501"}


id: PBO:0058830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8060","termid":"PBO:0058830"}


id: PBO:0055622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3061","termid":"PBO:0055622"}


id: PBO:0038490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 1","termid":"PBO:0038490"}


id: GO:0050483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5'-IMP + H2O = inosine + phosphate.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete IMP 5'-nucleotidase activity (obsolete GO:0050483)","secondary_identifiers":["MetaCyc:RXN-7607"],"synonyms":[{"name":"IMP 5' nucleotidase activity","type":"exact"},{"name":"IMP-GMP specific 5'-nucleotidase activity","type":"related"}],"termid":"GO:0050483"}


id: PBO:0090118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit Gid4","termid":"PBO:0090118"}


id: GO:0050078
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + malonate = acetate + malonyl-CoA.","definition_xrefs":["EC:2.8.3.3","RHEA:18817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016782","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"malonate CoA-transferase activity","secondary_identifiers":["KEGG_REACTION:R00743","MetaCyc:MALONATE-COA-TRANSFERASE-RXN"],"synonyms":[{"name":"acetyl-CoA:malonate CoA-transferase activity","type":"related"},{"name":"malonate coenzyme A-transferase activity","type":"related"}],"termid":"GO:0050078"}


id: PBO:0077320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 59","termid":"PBO:0077320"}


id: GO:0060701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate, frequency, or extent of ribonuclease activity, catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ribonuclease activity (obsolete GO:0060701)","termid":"GO:0060701"}


id: GO:1904541
data:
  {"annotated_genes":["SJAG_01888","SJAG_01017","SJAG_03444","SJAG_02718","SJAG_01171","SJAG_00667","SJAG_05001","SJAG_03646"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90285,91103,96031,102172,103964,103965,110106,113371],"is_not":false,"summary":null,"term":"GO:1904541"}]},"cv_name":"biological_process","definition":"Any fungal-type cell wall disassembly that is involved in conjugation with cellular fusion.","definition_xrefs":["GOC:TermGenie","GO_REF:0000060","PMID:25825517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall organization involved in conjugation with cellular fusion","termid":"GO:0070871"},{"relation_name":"is_a","term_name":"fungal-type cell wall disassembly","termid":"GO:0071853"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_02718":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0000747","GO:0071554"],"is_obsolete":false,"name":"fungal-type cell wall disassembly involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall disassembly involved in cell fusion","type":"related"},{"name":"fungal-type cell wall disassembly involved in mating","type":"related"}],"termid":"GO:1904541","terms_by_termid":{"GO:1904541":null}}


id: PBO:0064990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich mitotic checkpoint control factor","termid":"PBO:0064990"}


id: PBO:0091931
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Galactose-Specific Flocculation","termid":"PBO:0091931"}


id: PBO:0069975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1270, pseudogene","termid":"PBO:0069975"}


id: PBO:0005350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-factor pheromone Map2","termid":"PBO:0005350"}


id: PR:Q9UTG3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1805.14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTG3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1805.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1805.14","synonyms":[{"name":"Spom972h-SPAC1805.14","type":"exact"}],"termid":"PR:Q9UTG3"}


id: GO:0070055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The endonucleolytic cleavage of a mRNA containing an HAC1-type intron at the 5' and 3' splice sites. The cleavage step is part of unconventional mRNA splicing, and contributes to the endoplasmic reticulum unfolded protein response.","definition_xrefs":["PMID:10357823","GOC:bf","GOC:krc","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA endonucleolytic cleavage involved in unfolded protein response (obsolete GO:0070055)","synonyms":[{"name":"ERN1-mediated XBP-1 mRNA cleavage","type":"related"},{"name":"HAC1 mRNA cleavage","type":"narrow"},{"name":"HAC1-type intron splice site recognition and cleavage","type":"narrow"},{"name":"IRE1-mediated XBP-1 mRNA cleavage","type":"narrow"},{"name":"XBP1 mRNA cleavage","type":"narrow"}],"termid":"GO:0070055"}


id: MOD:00332
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to N4-glucosyl-arginine.","definition_xrefs":["PubMed:9536051","RESID:AA0327","PubMed:8521968","Unimod:41#R","PubMed:15279557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosylated residue","termid":"MOD:00433"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"},{"relation_name":"is_a","term_name":"omega-N-glycosyl-L-arginine","termid":"MOD:01980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"omega-N-glucosyl-L-arginine","synonyms":[{"name":"(2S)-2-amino-5-(beta-D-glucopyranosyl[imino(methylamino)methyl]amino)pentanoic acid","type":"exact"},{"name":"CARBOHYD N-linked (Glc) arginine","type":"exact"},{"name":"Hex","type":"related"},{"name":"Hexose","type":"related"},{"name":"NG-beta-D-glucosylarginine","type":"exact"},{"name":"omega-N-(beta-D-glucosyl)-L-arginine","type":"exact"},{"name":"omega-N-glucosyl-L-arginine","type":"exact"},{"name":"omega-N-glycosyl-L-arginine","type":"exact"}],"termid":"MOD:00332"}


id: MONDO:0007295
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A childhood-onset epilepsy syndrome that is characterized by onset of seizures between 3 and 14 years (peak 8-9 years) that usually resolve by age 13 years, but can occasionally occur up to age 18 years of age. Both sexes are affected. Antecedent, birth and neonatal history is normal. A history of febrile seizure (in 5-15%) may be seen. A history of Panayiotopoulos syndrome may be present in a very small number of cases. Neurological exam and head size is normal. Development and cognition prior to onset of seizures is normal. During the course of the active epilepsy, behavioral and neuropsychological deficits may be found, particularly in language and executive functioning. These deficits improve when seizures remit.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy","termid":"MONDO:0005027"},{"relation_name":"excluded_subClassOf","term_name":"Landau-Kleffner syndrome","termid":"MONDO:0009509"},{"relation_name":"is_a","term_name":"familial partial epilepsy","termid":"MONDO:0017704"},{"relation_name":"is_a","term_name":"childhood-onset self-limited focal epilepsy syndrome","termid":"MONDO:0800502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"self-limited epilepsy with centrotemporal spikes","secondary_identifiers":["MEDGEN:138210","NCIT:C116538","DOID:3329","SCTID:44145005","UMLS:C0376532","ICD9:345.80","OMIM:117100","icd11.foundation:1046279423","GARD:10287","Orphanet:1945"],"synonyms":[{"name":"BCECTS","type":"exact"},{"name":"BECRS","type":"exact"},{"name":"BECTS","type":"exact"},{"name":"BRE","type":"exact"},{"name":"Rolandic epilepsy","type":"exact"},{"name":"benign Rolandic epilepsy","type":"exact"},{"name":"benign Rolandic epilepsy (BRE)","type":"exact"},{"name":"benign Rolandic epilepsy of childhood (BREC)","type":"exact"},{"name":"benign childhood epilepsy with centrotemporal spike","type":"exact"},{"name":"benign childhood epilepsy with centrotemporal spikes","type":"exact"},{"name":"benign epilepsy of childhood with centrotemporal spikes","type":"exact"},{"name":"benign epilepsy of childhood with centrotemporal spikes (BECCT)","type":"related"},{"name":"benign epilepsy with centro-temporal spikes (BECTS)","type":"related"},{"name":"benign epilepsy with centrotemporal spikes","type":"exact"},{"name":"benign familial epilepsy of childhood with rolandic spikes","type":"exact"},{"name":"centralopathic epilepsy","type":"exact"},{"name":"centrotemporal epilepsy","type":"exact"},{"name":"centrotemporal epilepsy, isolated cases","type":"exact"},{"name":"childhood epilepsy with centrotemporal spikes","type":"exact"},{"name":"sylvan seizures","type":"exact"},{"name":"temporal-central focal epilepsy","type":"exact"}],"termid":"MONDO:0007295","xrefs":{"Monarch":{"xref_id":"0007295"}}}


id: GO:0006796
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id: PBO:0110031
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP144 pseudogene 3","termid":"PBO:0110031"}


id: PBO:0073457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"surfactant associated 3","termid":"PBO:0073457"}


id: GO:0016120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotene metabolic process","termid":"GO:0016119"},{"relation_name":"is_a","term_name":"terpene biosynthetic process","termid":"GO:0046246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"carotene biosynthetic process","synonyms":[{"name":"carotene anabolism","type":"exact"},{"name":"carotene biosynthesis","type":"exact"},{"name":"carotene formation","type":"exact"},{"name":"carotene synthesis","type":"exact"}],"termid":"GO:0016120"}


id: PBO:0027944
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_homologous_chromosome_segregation","termid":"PBO:0027944"}


id: PBO:0083678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endosomal protein of unknown function; contains a phox (PX) homology domain; binds to both phosphatidylinositol-3-phosphate (PtdIns(3)P) and proteins involved in ER-Golgi or vesicular transport","termid":"PBO:0083678"}


id: GO:0090236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in somitogenesis (obsolete GO:0090236)","termid":"GO:0090236"}


id: MONDO:0021498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the placenta.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine benign neoplasm","termid":"MONDO:0000632"},{"relation_name":"is_a","term_name":"placenta neoplasm","termid":"MONDO:0021218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of placenta","secondary_identifiers":["UMLS:C0686274","icd11.foundation:194589255","ICD9:219.8","MEDGEN:146350","NCIT:C8545","EFO:1001443","SCTID:92297008"],"synonyms":[{"name":"benign neoplasm of the placenta","type":"exact"},{"name":"benign placenta neoplasm","type":"exact"},{"name":"benign placenta tumor","type":"exact"},{"name":"benign placenta tumour","type":"exact"},{"name":"benign placental neoplasm","type":"exact"},{"name":"benign placental tumor","type":"exact"},{"name":"benign placental tumour","type":"exact"},{"name":"benign tumor of placenta","type":"exact"},{"name":"benign tumor of the placenta","type":"exact"},{"name":"benign tumour of placenta","type":"exact"},{"name":"benign tumour of the placenta","type":"exact"},{"name":"placenta benign neoplasm","type":"exact"},{"name":"placental neoplasms, benign","type":"exact"}],"termid":"MONDO:0021498","xrefs":{"Monarch":{"xref_id":"0021498"}}}


id: MONDO:0021929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myositis Ossificans resulting from trauma.","definition_xrefs":["NCIT:C35081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myositis ossificans","termid":"MONDO:0003964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"traumatic myositis ossificans","secondary_identifiers":["ICD9:728.12","MEDGEN:11895","SCTID:70917000","UMLS:C0040798"],"synonyms":[{"name":"Myositis ossificans circumscripta","type":"related"},{"name":"Myositis ossificans traumatica","type":"related"},{"name":"Traumatic Myositis Ossificans","type":"related"},{"name":"Traumatic myositis ossificans","type":"related"},{"name":"myositis ossificans circumscripta","type":"related"},{"name":"myositis ossificans traumatica","type":"related"},{"name":"traumatic myositis ossificans","type":"exact"}],"termid":"MONDO:0021929","xrefs":{"Monarch":{"xref_id":"0021929"}}}


id: GO:0099619
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 10-formyltetrahydrofolate + UDP-4-amino-4-deoxy-beta-L-arabinopyranose = 5,6,7,8-tetrahydrofolate + UDP-4-deoxy-4-formamido-beta-L-arabinopyranose.","definition_xrefs":["PMID:15695810","PMID:15807526","PMID:15939024","PMID:15809294","PMID:17928292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-4-amino-4-deoxy-L-arabinose formyltransferase activity","secondary_identifiers":["EC:2.1.2.13","RHEA:24706"],"synonyms":[{"name":"10-formyltetrahydrofolate:UDP-4-amino-4-deoxy-beta-L-arabinose N-formyltransferase activity","type":"exact"},{"name":"ArnAFT activity","type":"exact"},{"name":"UDP-L-Ara4N formyltransferase activity","type":"exact"}],"termid":"GO:0099619"}


id: PBO:0055094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2512","termid":"PBO:0055094"}


id: FYPO:0008075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex of one or both cell tips is increased.","definition_xrefs":["PMID:25959226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex of cell tip during vegetative growth","termid":"FYPO:0006875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to cell cortex of cell tip during vegetative growth","termid":"FYPO:0008075"}


id: GO:0014815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Signaling between growth factors and their receptors that results in the activation of satellite cell, where this process is involved in skeletal muscle regeneration. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fiber, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage.","definition_xrefs":["GOC:mtg_muscle","PMID:16607119","GOC:ef"],"gene_count":0,"genotype_count":0,"name":"obsolete initiation of skeletal muscle satellite cell activation by growth factor signaling, involved in skeletal muscle regeneration (obsolete GO:0014815)","termid":"GO:0014815"}


id: GO:0000965
data:
  {"annotated_genes":["SJAG_02991","SJAG_01704","SJAG_06586","SJAG_04885","SJAG_00997","SJAG_02288"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116490,100968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090616"},{"annotations":[119988,72022,82340,89743],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990180"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA processing","termid":"GO:0000963"},{"relation_name":"is_a","term_name":"RNA 3'-end processing","termid":"GO:0031123"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00997":null,"SJAG_01704":null,"SJAG_02288":null,"SJAG_02991":null,"SJAG_04885":null,"SJAG_06586":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"mitochondrial RNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial RNA 3' end processing","type":"related"}],"termid":"GO:0000965","terms_by_termid":{"GO:0090616":null,"GO:1990180":null}}


id: MONDO:0015175
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune pancreatitis (AIP) is a rare pancreatic disease characterized by chronic non-alcoholic pancreatitis that presents with abdominal pain, steatorrhea, obstructive jaundice and responds well to steroid therapy and is seen in two subforms: type 1 AIP which affects elderly males, involves other organs and has increased immunoglobin G4 (IgG4) levels and type 2 AIP which affects both sexes equally but presents at a younger age and has no other organ involvement or increased IgG4 levels.","definition_xrefs":["Orphanet:103919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disorder of endocrine system","termid":"MONDO:0000569"},{"relation_name":"is_a","term_name":"autoimmune disorder of gastrointestinal tract","termid":"MONDO:0000588"},{"relation_name":"is_a","term_name":"pancreatitis","termid":"MONDO:0004982"},{"relation_name":"is_a","term_name":"immunoglobulin G4-related sclerosing disease","termid":"MONDO:0017287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"autoimmune pancreatitis","secondary_identifiers":["UMLS:C2609129","icd11.foundation:2057951941","DOID:0040091","NANDO:2200943","MEDGEN:750633","GARD:10911","MedDRA:10069002","MESH:D000081012","NANDO:1200925","SCTID:448542008"],"synonyms":[{"name":"AIP","type":"exact"},{"name":"lymphoplasmocytic sclerosing pancreatitis","type":"related"}],"termid":"MONDO:0015175","xrefs":{"Monarch":{"xref_id":"0015175"}}}


id: PBO:0066189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 11 pseudogene 1","termid":"PBO:0066189"}


id: GO:0043723
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one + H2O = 5-amino-6-(5-phospho-D-ribosylamino)uracil + ammonia.","definition_xrefs":["MetaCyc:RXN-10058","PMID:11889103"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity (obsolete GO:0043723)","synonyms":[{"name":"2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase activity","type":"exact"},{"name":"DRAP deaminase activity","type":"exact"}],"termid":"GO:0043723"}


id: GO:1902082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium ion import into sarcoplasmic reticulum.","definition_xrefs":["PMID:8349590","GOC:BHF","GOC:TermGenie","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"positive regulation of calcium ion transport","termid":"GO:0051928"},{"relation_name":"is_a","term_name":"regulation of calcium ion import into sarcoplasmic reticulum","termid":"GO:1902080"},{"relation_name":"positively_regulates","term_name":"calcium ion import into sarcoplasmic reticulum","termid":"GO:1990036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of calcium ion import into sarcoplasmic reticulum","synonyms":[{"name":"activation of calcium ion import into sarcoplasmic reticulum","type":"narrow"},{"name":"up regulation of calcium ion import into sarcoplasmic reticulum","type":"exact"},{"name":"up-regulation of calcium ion import into sarcoplasmic reticulum","type":"exact"},{"name":"upregulation of calcium ion import into sarcoplasmic reticulum","type":"exact"}],"termid":"GO:1902082"}


id: PBO:0051630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner mitochondrial membrane peptidase subunit 1","termid":"PBO:0051630"}


id: PBO:0083870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-Box protein involved in proteasome-dependent degradation of Aah1p; involved in proteasome-dependent degradation of Aah1p during entry of cells into quiescence; interacts with Skp1","termid":"PBO:0083870"}


id: PBO:0048907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member B","termid":"PBO:0048907"}


id: PBO:0117186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP6 antisense RNA 1","termid":"PBO:0117186"}


id: PBO:0079333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 19","termid":"PBO:0079333"}


id: MONDO:0011448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial partial lipodystrophy","termid":"MONDO:0020088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"PPARG-related familial partial lipodystrophy","secondary_identifiers":["MEDGEN:328393","OMIM:604367","GARD:12600","DOID:0070204","Orphanet:79083","UMLS:C1720861"],"synonyms":[{"name":"FPLD3","type":"exact"},{"name":"PPARG-related FPLD","type":"exact"},{"name":"familial partial lipodystrophy associated with PPARG mutations","type":"related"},{"name":"familial partial lipodystrophy type 3","type":"exact"},{"name":"insulin resistance, severe, digenic","type":"related"},{"name":"lipodystrophy, familial partial, associated with Pparg mutations","type":"related"},{"name":"lipodystrophy, familial partial, type 3","type":"related"}],"termid":"MONDO:0011448","xrefs":{"Monarch":{"xref_id":"0011448"}}}


id: MONDO:0008726
data:
  {"annotated_genes":["SJAG_04270"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87588],"is_not":false,"summary":null,"term":"MONDO:0008726"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Antley-Bixler syndrome","termid":"MONDO:0008803"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0006025"],"is_obsolete":false,"name":"Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:461449","NCIT:C178415","GARD:16665","Orphanet:63269","UMLS:C3150099","OMIM:201750"],"synonyms":[{"name":"ABS1","type":"related"},{"name":"Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis","type":"exact"},{"name":"Antley-Bixler syndrome with genital anomaly and disorder of steroidogenesis","type":"exact"}],"termid":"MONDO:0008726","terms_by_termid":{"MONDO:0008726":null},"xrefs":{"Monarch":{"xref_id":"0008726"}}}


id: GO:0043534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.","definition_xrefs":["PMID:11166264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell migration","termid":"GO:0043542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood vessel endothelial cell migration","termid":"GO:0043534"}


id: MONDO:0013849
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive primary microcephaly in which the cause of the disease is a mutation in the CEP135 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive primary microcephaly","termid":"MONDO:0016660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0700092"],"is_obsolete":false,"name":"microcephaly 8, primary, autosomal recessive","secondary_identifiers":["UMLS:C3553414","MEDGEN:766328","DOID:0070282","GARD:15833","OMIM:614673"],"synonyms":[{"name":"CEP135 autosomal recessive primary microcephaly","type":"exact"},{"name":"MCPH8","type":"related"},{"name":"autosomal recessive primary microcephaly caused by mutation in CEP135","type":"exact"},{"name":"microcephaly 8, primary, autosomal recessive","type":"exact"}],"termid":"MONDO:0013849","xrefs":{"Monarch":{"xref_id":"0013849"}}}


id: MONDO:0957451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare closed spinal dysraphism characterized by myelocystocele located above the conus region. Also considered as a form of saccular limited dorsal myeloschisis.","definition_xrefs":["Orphanet:645340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelocystocele","termid":"MONDO:0017077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"non-terminal myelocystocele","secondary_identifiers":["MEDGEN:1843415","UMLS:C5816719"],"termid":"MONDO:0957451","xrefs":{"Monarch":{"xref_id":"0957451"}}}


id: FYPO:0000336
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02763:allele-3":{"allele_type":"amino_acid_mutation","description":"S235A; S651","gene_uniquename":"SJAG_02763","name":"ned1S235A/S651","synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_02763:allele-6":{"allele_type":"amino_acid_mutation","description":"S499A; S538A; T620A; T638A; S651A","gene_uniquename":"SJAG_02763","name":"ned1-5A","synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121438],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[121486],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[121353,121366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[121459],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[121664,121667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006054"},{"annotations":[121427,121257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[121661,121668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006945"},{"annotations":[121487],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of cellular component assembly at the cellular level is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_02763":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":10,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5A(S499A; S538A; T620A; T638A; S651A aa)","display_uniquename":"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-6","expression":"Not assayed or wild type"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_04522","SJAG_01143","SJAG_04280"],"name":"abnormal cellular component assembly","references_by_uniquename":{"PMID:25866389":null,"PMID:26774782":null,"PMID:27059155":null,"PMID:30664646":null,"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_02763","SJAG_01143","SJAG_02592","SJAG_04522","SJAG_02392"],"single_locus_genotype_uniquenames":["sty1delta","ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","rga4delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","pom1delta","mid1delta"],"synonyms":[{"name":"abnormal cellular component assembly at cellular level","type":"exact"}],"termid":"FYPO:0000336","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000729":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0002998":null,"FYPO:0006054":null,"FYPO:0006945":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MONDO:0007067
data:
  {"annotated_genes":["SJAG_02796"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89188],"is_not":false,"summary":null,"term":"MONDO:0007067"}]},"cv_name":"mondo","definition":"Autosomal dominant phenotype characterized by increase of red blood cell ATP.","definition_xrefs":["EFO:0005840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolism disorder","termid":"MONDO:0016789"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"pyruvate kinase hyperactivity","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:350114","MESH:C566310","UMLS:C1863224","OMIM:102900"],"synonyms":[{"name":"adenosine triphosphate, elevated, of erythrocytes","type":"related"},{"name":"pyruvate kinase hyperactivity","type":"exact"}],"termid":"MONDO:0007067","terms_by_termid":{"MONDO:0007067":null},"xrefs":{"Monarch":{"xref_id":"0007067"}}}


id: GO:0042590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules.","definition_xrefs":["GOC:add","PMID:15771591","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class I","termid":"GO:0002474"},{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen","termid":"GO:0002478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous peptide antigen via MHC class I","secondary_identifiers":["Reactome:R-HSA-1236975"],"synonyms":[{"name":"antigen presentation, exogenous antigen via MHC class I","type":"exact"},{"name":"antigen presentation, exogenous antigen via major histocompatibility complex class I","type":"exact"},{"name":"cross presentation","type":"broad"},{"name":"cross priming","type":"broad"},{"name":"cross-presentation","type":"broad"},{"name":"cross-priming","type":"broad"},{"name":"exogenous peptide antigen processing and presentation via MHC class I","type":"exact"}],"termid":"GO:0042590"}


id: MONDO:0010789
data:
  {"annotated_genes":["SJAG_MIT20","SJAG_MIT03","SJAG_MIT13","SJAG_MIT04"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88129,88130,88131,88132],"is_not":false,"summary":null,"term":"MONDO:0010789"}]},"cv_name":"mondo","definition":"MELAS (Mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke) syndrome is a rare progressive multisystemic disorder characterized by encephalomyopathy, lactic acidosis, and stroke-like episodes. Other features include endocrinopathy, heart disease, diabetes, hearing loss, and neurological and psychiatric manifestations.","definition_xrefs":["Orphanet:550"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"mitochondrial encephalomyopathy","termid":"MONDO:0004675"}],"gene_count":4,"genes_by_uniquename":{"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005336","MONDO:0004069"],"is_obsolete":false,"name":"MELAS syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:7009","MedDRA:10053872","DOID:3687","SCTID:39925003","NANDO:2200525","MEDGEN:56485","OMIM:540000","NCIT:C84885","ICD9:277.87","NANDO:1200176","ICD10CM:E88.41","MESH:D017241","UMLS:C0162671"],"synonyms":[{"name":"MELAS","type":"related"},{"name":"MELAS syndrome","type":"exact"},{"name":"mitochondrial encephalomyopathy lactic acidosis and stroke-like episodes","type":"related"},{"name":"mitochondrial encephalomyopathy, lactic acidosis and stroke","type":"exact"},{"name":"mitochondrial encephalomyopathy, lactic acidosis and stroke-like episodes","type":"exact"},{"name":"mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes","type":"exact"},{"name":"mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes","type":"exact"}],"termid":"MONDO:0010789","terms_by_termid":{"MONDO:0010789":null},"xrefs":{"Monarch":{"xref_id":"0010789"}}}


id: GO:0120299
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histamine + L-glutaminyl-[protein] = 5-histaminyl-L-glutamyl-[protein].","definition_xrefs":["PMID:23022564","GOC:sp","PMID:23797785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"peptide histaminyltransferase activity","secondary_identifiers":["RHEA:66564"],"termid":"GO:0120299"}


id: GO:0045252
data:
  {"annotated_genes":["SJAG_06382","SJAG_03290","SJAG_02464","SJAG_03163"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[65414,72184,73706,108768],"is_not":false,"summary":null,"term":"GO:0045252"}]},"cv_name":"cellular_component","definition":"A multi-enzyme complex that catalyzes the oxidative decarboxylation of alpha-ketoglutarate (also known as 2-oxoglutarate) to form succinyl-CoA. The complex comprises multiple copies of three enzymes referred to as E1, E2 and E3: oxoglutarate dehydrogenase (lipoamide) (E1), dihydrolipoamide S-succinyltransferase (E2) and dihydrolipoamide dehydrogenase (E3). Additional proteins may also be present.","definition_xrefs":["PMID:10672230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid cycle heteromeric enzyme complex","termid":"GO:0045239"},{"relation_name":"is_a","term_name":"alpha-ketoacid dehydrogenase complex","termid":"GO:0045240"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02464":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_06382":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"oxoglutarate dehydrogenase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Oxoglutarate_dehydrogenase_complex"],"synonyms":[{"name":"KGDHC","type":"exact"},{"name":"alpha-ketoglutarate dehydrogenase complex","type":"exact"},{"name":"dihydrolipoamide S-succinyltransferase complex","type":"exact"}],"termid":"GO:0045252","terms_by_termid":{"GO:0045252":null}}


id: PBO:0082699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Mcm2-7 hexameric helicase complex; MCM2-7 primes origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation in S-phase; forms an Mcm4p-6p-7p subcomplex","termid":"PBO:0082699"}


id: PBO:0061328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B6","termid":"PBO:0061328"}


id: PBO:0070909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 17","termid":"PBO:0070909"}


id: FYPO:0006222
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of one or more phosphatidylinositol phosphates measured in the plasma membrane is higher than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"},{"relation_name":"is_a","term_name":"decreased cellular phosphoinositide level","termid":"FYPO:0005588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased phosphatidylinositol phosphate level in plasma membrane","synonyms":[{"name":"decreased phosphatidylinositol phosphate level in cell membrane during vegetative growth","type":"exact"},{"name":"decreased phosphatidylinositol phosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"decreased phosphatidylinositol phosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"decreased plasma membrane phosphatidylinositol phosphate level during vegetative growth","type":"exact"},{"name":"reduced phosphatidylinositol phosphate level in plasma membrane","type":"exact"}],"termid":"FYPO:0006222"}


id: PR:O60112
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC15C4.03 gene.","definition_xrefs":["UniProtKB:O60112","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized Rab geranylgeranyltransferase C15C4.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15C4.03","synonyms":[{"name":"Spom972h-SPBC15C4.03","type":"exact"}],"termid":"PR:O60112"}


id: PBO:0076911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor AP-2 alpha","termid":"PBO:0076911"}


id: GO:1904975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bleomycin stimulus.","definition_xrefs":["PMID:11553781","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to bleomycin","termid":"GO:1904975"}


id: MONDO:0017570
data:
  {"annotated_genes":["SJAG_01960"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009953"}]},"cv_name":"mondo","definition":"Leukocyte adhesion deficiency (LAD) is a primary immunodeficiency characterized by defects in the leukocyte adhesion process, marked leukocytosis and recurrent infections.","definition_xrefs":["Orphanet:2968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"functional neutrophil defect","termid":"MONDO:0015978"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0006025"],"is_obsolete":false,"name":"leukocyte adhesion deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200755","DOID:6612","icd11.foundation:317341989","MEDGEN:124419","NCIT:C27874","NANDO:1200355","GARD:16616","SCTID:77358003","UMLS:C0272187"],"synonyms":[{"name":"LAD","type":"broad"},{"name":"congenital leukocyte adherence deficiency","type":"exact"}],"termid":"MONDO:0017570","terms_by_termid":{"MONDO:0009953":null},"xrefs":{"Monarch":{"xref_id":"0017570"}}}


id: FYPO:0005130
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which spores germinate to a lower extent than wild type following exposure to heat.","definition_xrefs":["PMID:24623719","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell phenotype","termid":"FYPO:0003037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"spores sensitive to heat","termid":"FYPO:0005130"}


id: MONDO:1011618
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Waardenburg syndrome that occurs in golden hamster.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Waardenburg syndrome, non-human animal","termid":"MONDO:1011447"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Waardenburg syndrome, golden hamster","secondary_identifiers":["OMIA:001059-10036"],"termid":"MONDO:1011618","xrefs":{"Monarch":{"xref_id":"1011618"}}}


id: GO:0070738
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target tubulin molecule; acts on alpha or beta tubulin.","definition_xrefs":["PMID:19524510","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-glycine ligase activity","termid":"GO:0070735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"tubulin-glycine ligase activity","synonyms":[{"name":"tubulin glycylase activity","type":"exact"}],"termid":"GO:0070738"}


id: PBO:0041485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 98","termid":"PBO:0041485"}


id: GO:0033315
data:
  {"annotated_genes":["SJAG_00364","SJAG_02771","SJAG_04287"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93439,108647,118118],"is_not":false,"summary":null,"term":"GO:0033315"}]},"cv_name":"biological_process","definition":"A signal transduction process that controls the G2/M1 transition of the meiotic cell cycle and prevents the initiation of nuclear division until DNA replication is complete.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication checkpoint signaling","termid":"GO:0000076"},{"relation_name":"is_a","term_name":"meiotic DNA integrity checkpoint signaling","termid":"GO:0044778"},{"relation_name":"is_a","term_name":"negative regulation of G2/MI transition of meiotic cell cycle","termid":"GO:0110031"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_02771":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"meiotic G2/MI DNA replication checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072440"],"synonyms":[{"name":"meiotic G2/MI DNA replication checkpoint","type":"exact"},{"name":"meiotic cell cycle DNA replication checkpoint","type":"exact"},{"name":"signal transduction involved in meiotic DNA replication checkpoint","type":"exact"}],"termid":"GO:0033315","terms_by_termid":{"GO:0033315":null}}


id: GO:1904346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gastric mucosal blood circulation.","definition_xrefs":["PMID:10807413","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of blood circulation","termid":"GO:1903524"},{"relation_name":"is_a","term_name":"regulation of gastric mucosal blood circulation","termid":"GO:1904344"},{"relation_name":"positively_regulates","term_name":"gastric mucosal blood circulation","termid":"GO:1990768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of gastric mucosal blood circulation","synonyms":[{"name":"activation of gastric mucosal blood circulation","type":"narrow"},{"name":"activation of stomach mucosal blood circulation","type":"narrow"},{"name":"positive regulation of stomach mucosal blood circulation","type":"exact"},{"name":"up regulation of gastric mucosal blood circulation","type":"exact"},{"name":"up regulation of stomach mucosal blood circulation","type":"exact"},{"name":"up-regulation of gastric mucosal blood circulation","type":"exact"},{"name":"up-regulation of stomach mucosal blood circulation","type":"exact"},{"name":"upregulation of gastric mucosal blood circulation","type":"exact"},{"name":"upregulation of stomach mucosal blood circulation","type":"exact"}],"termid":"GO:1904346"}


id: PBO:0038899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor B1","termid":"PBO:0038899"}


id: GO:1905949
data:
  {"annotated_genes":["SJAG_00296","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93227,115419],"is_not":false,"summary":null,"term":"GO:1905949"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion import across plasma membrane.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:17640527","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of calcium ion import","termid":"GO:0090281"},{"relation_name":"is_a","term_name":"negative regulation of calcium ion transmembrane transport","termid":"GO:1903170"},{"relation_name":"is_a","term_name":"regulation of calcium ion import across plasma membrane","termid":"GO:1905664"},{"relation_name":"negatively_regulates","term_name":"calcium ion import across plasma membrane","termid":"GO:0098703"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of calcium ion import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of calcium ion import across plasma membrane","type":"exact"},{"name":"down-regulation of calcium ion import across plasma membrane","type":"exact"},{"name":"downregulation of calcium ion import across plasma membrane","type":"exact"},{"name":"inhibition of calcium ion import across plasma membrane","type":"narrow"}],"termid":"GO:1905949","terms_by_termid":{"GO:1905949":null}}


id: GO:0008133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Was not defined before being made obsolete.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete collagenase activity (obsolete GO:0008133)","synonyms":[{"name":"collagenase activity","type":"exact"}],"termid":"GO:0008133"}


id: GO:0048032
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a galacturonate. Galacturonate is the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"galacturonate binding","synonyms":[{"name":"galacturonic acid binding","type":"exact"}],"termid":"GO:0048032"}


id: PBO:0079728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBTF like 5 (pseudogene)","termid":"PBO:0079728"}


id: GO:0018656
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-3,4-oxide.","definition_xrefs":["PMID:1599252","UM-BBD_reactionID:r0508"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene 3,4-monooxygenase activity (obsolete GO:0018656)","termid":"GO:0018656"}


id: MONDO:0850461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A fetal alcohol spectrum disorder that is characterized by one or more deficits in neurocognition and in self-regulation plus two or more deficits in adaptive functioning, with at least 1 in communication or social communication and interaction.","definition_xrefs":["DOID:0081052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fetal alcohol spectrum disorder","termid":"MONDO:0000408"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurobehavioral disorder with prenatal alcohol exposure","termid":"MONDO:0850461","xrefs":{"Monarch":{"xref_id":"0850461"}}}


id: MONDO:0011049
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by psychomotor delay, brachycephaly with flat face, small nose, microstomia, cleft palate, cataract, hearing loss, hypoplastic scrotum and digital anomalies.","definition_xrefs":["Orphanet:1272"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fine-Lubinsky syndrome","secondary_identifiers":["UMLS:C0795941","MEDGEN:163198","MESH:C537933","SCTID:720955004","GARD:958","OMIM:601353"],"synonyms":[{"name":"brachycephaly, deafness, cataract and intellectual disability","type":"related"},{"name":"brachycephaly, deafness, cataract and mental retardation","type":"related"},{"name":"brachycephaly, deafness, cataract, microstomia, and intellectual disability","type":"related"},{"name":"brachycephaly, deafness, cataract, microstomia, and mental retardation","type":"related"},{"name":"brachycephaly-deafness-cataract-intellectual disability syndrome","type":"exact"},{"name":"fine-Lubinsky syndrome","type":"exact"}],"termid":"MONDO:0011049","xrefs":{"Monarch":{"xref_id":"0011049"}}}


id: MONDO:0007489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dysplasia epiphysealis hemimelica (DEH), or Trevor's disease, is a rare condition that most commonly affects the epiphysis (the end) of long bones in children. Early diagnosis and treatment are necessary to prevent joint dysfunction and deformity and may be surgical or non-surgical depending on the location and the symptoms. Due to the progressive nature of this disorder and the chance of worsening deformity, patients should be followed until skeletal maturity. The cause of dysplasia epiphysealis hemimelica is not known.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with disorganized development of skeletal components (obsolete MONDO:0019708)","termid":"MONDO:0019708"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysplasia epiphysealis hemimelica","secondary_identifiers":["NORD:1072","MEDGEN:96591","MESH:C537997","ICD9:756.59","OMIM:127800","SCTID:205480005","GARD:2019","Orphanet:1822","UMLS:C0432282","icd11.foundation:1995096940"],"synonyms":[{"name":"Trevor disease","type":"exact"},{"name":"dysplasia epiphysealis hemimelica","type":"exact"}],"termid":"MONDO:0007489","xrefs":{"Monarch":{"xref_id":"0007489"}}}


id: PBO:0000619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ family","termid":"PBO:0000619"}


id: PBO:0079204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSR2 ribosome maturation factor","termid":"PBO:0079204"}


id: PBO:0042567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase inhibitor 1C","termid":"PBO:0042567"}


id: PBO:0040855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bridge-like lipid transfer protein family member 1","termid":"PBO:0040855"}


id: MONDO:0032569
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated congenital growth hormone deficiency","termid":"MONDO:0000050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"isolated growth hormone deficiency, type 5","secondary_identifiers":["UMLS:C4748435","MEDGEN:1648500","OMIM:618160","DOID:0061016"],"synonyms":[{"name":"IGHD5","type":"related"},{"name":"ISOLATED GROWTH HORMONE DEFICIENCY, TYPE V","type":"related"},{"name":"pituitary hormone deficiency, combined or isolated, 7","type":"exact"}],"termid":"MONDO:0032569","xrefs":{"Monarch":{"xref_id":"0032569"}}}


id: FYPO:0002929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which polyadenylated RNA molecules have poly(A) tails of abnormal length.","definition_xrefs":["PMID:24081329","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal poly(A) tail length","synonyms":[{"name":"abnormal polyA sequence length","type":"exact"},{"name":"abnormal polyA tail length","type":"exact"}],"termid":"FYPO:0002929"}


id: GO:0046790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a virion, either by binding to components of the capsid or the viral envelope.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"virion binding","termid":"GO:0046790"}


id: GO:0034059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%.","definition_xrefs":["GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"response to decreased oxygen levels","termid":"GO:0036293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to anoxia","synonyms":[{"name":"response to anoxic stress","type":"exact"}],"termid":"GO:0034059"}


id: MONDO:0100529
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, photosensitive epileptic disorder characterized by highly stereotyped seizures. During these seizures, individuals with Sunflower syndrome turn toward a bright light while simultaneously waving one hand in front of their eyes. This unique behavior is coupled with abrupt lapses in consciousness.","definition_xrefs":["PMID:34653789","PMID:33135153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosensitive epilepsy","termid":"MONDO:0015643"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome","termid":"MONDO:0020072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"Sunflower syndrome","synonyms":[{"name":"EEM with prominent photic induction","type":"exact"}],"termid":"MONDO:0100529","xrefs":{"Monarch":{"xref_id":"0100529"}}}


id: MONDO:0700131
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sarcoma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer, non-human animal","termid":"MONDO:1011828"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoma, non-human animal","termid":"MONDO:0700131","xrefs":{"Monarch":{"xref_id":"0700131"}}}


id: PBO:0057001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 93","termid":"PBO:0057001"}


id: PBO:0080415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS50 subunit of EARP/GARPII complex","termid":"PBO:0080415"}


id: PBO:0064865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R21 divergent transcript","termid":"PBO:0064865"}


id: MONDO:0037792
data:
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id: MONDO:0011987
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id: SOFP:evidenceGB
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id: GO:0071809
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id: PBO:0051558
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id: PBO:0012247
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id: PBO:0030568
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id: PBO:0005105
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id: MONDO:0006037
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id: MOD:00660
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id: MONDO:0010012
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id: PBO:0046137
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id: PBO:0028438
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id: PR:O60176
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id: MONDO:0030036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukoencephalopathy, motor delay, spasticity, and dysarthria syndrome","secondary_identifiers":["UMLS:C5394371","MEDGEN:1719764","OMIM:618878"],"synonyms":[{"name":"LEMSPAD","type":"exact"},{"name":"LEUKOENCEPHALOPATHY, MOTOR DELAY, SPASTICITY, AND DYSARTHRIA SYNDROME","type":"exact"},{"name":"Lemspad Syndrome","type":"exact"},{"name":"leukoencephalopathy, motor delay, spasticity, and dysarthria syndrome","type":"exact"}],"termid":"MONDO:0030036","xrefs":{"Monarch":{"xref_id":"0030036"}}}


id: GO:0031947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glucocorticoid metabolic process","termid":"GO:0031944"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid biosynthetic process","termid":"GO:0031946"},{"relation_name":"is_a","term_name":"negative regulation of steroid hormone biosynthetic process","termid":"GO:0090032"},{"relation_name":"negatively_regulates","term_name":"glucocorticoid biosynthetic process","termid":"GO:0006704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of glucocorticoid biosynthetic process","synonyms":[{"name":"down regulation of glucocorticoid biosynthetic process","type":"exact"},{"name":"down-regulation of glucocorticoid biosynthetic process","type":"exact"},{"name":"downregulation of glucocorticoid biosynthetic process","type":"exact"},{"name":"inhibition of glucocorticoid biosynthetic process","type":"narrow"}],"termid":"GO:0031947"}


id: MONDO:0030009
data:
  {"annotated_genes":["SJAG_00624"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87493],"is_not":false,"summary":null,"term":"MONDO:0030009"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia - intellectual disability syndrome","termid":"MONDO:0008756"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00624":null},"genotype_count":0,"is_obsolete":false,"name":"alopecia-intellectual disability syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5394241","MEDGEN:1713432","OMIM:618840","DOID:0080950","GARD:16386"],"synonyms":[{"name":"ALOPECIA-MENTAL RETARDATION SYNDROME 4","type":"exact"},{"name":"APMR4","type":"exact"},{"name":"alopecia-intellectual disability syndrome 4","type":"exact"},{"name":"alopecia-mental retardation syndrome 4","type":"exact"}],"termid":"MONDO:0030009","terms_by_termid":{"MONDO:0030009":null},"xrefs":{"Monarch":{"xref_id":"0030009"}}}


id: GO:2001074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of metanephric ureteric bud development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metanephros development","termid":"GO:0072215"},{"relation_name":"regulates","term_name":"metanephric part of ureteric bud development","termid":"GO:0035502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of metanephric ureteric bud development","termid":"GO:2001074"}


id: MONDO:0015963
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inherited renal tumor (obsolete MONDO:0015963)","secondary_identifiers":["Orphanet:183595"],"synonyms":[{"name":"genetic renal tumor","type":"related"}],"termid":"MONDO:0015963","xrefs":{"Monarch":{"xref_id":"0015963"}}}


id: PBO:0049551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 13","termid":"PBO:0049551"}


id: MONDO:0859532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart defects, multiple types","termid":"MONDO:0000119"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"congenital heart defects, multiple types, 9","secondary_identifiers":["UMLS:C5830367","MEDGEN:1841003","OMIM:620294"],"termid":"MONDO:0859532","xrefs":{"Monarch":{"xref_id":"0859532"}}}


id: PBO:0090691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane trafficking protein, ER to Golgi Psg2","termid":"PBO:0090691"}


id: PBO:0032703
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_histone_H3_in_cell","termid":"PBO:0032703"}


id: GO:1903889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of plant epidermal cell differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:123345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"regulation of plant epidermal cell differentiation","termid":"GO:1903888"},{"relation_name":"negatively_regulates","term_name":"plant epidermal cell differentiation","termid":"GO:0090627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of plant epidermal cell differentiation","synonyms":[{"name":"down regulation of plant epidermal cell differentiation","type":"exact"},{"name":"down-regulation of plant epidermal cell differentiation","type":"exact"},{"name":"downregulation of plant epidermal cell differentiation","type":"exact"},{"name":"inhibition of plant epidermal cell differentiation","type":"narrow"}],"termid":"GO:1903889"}


id: PBO:0064961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 13","termid":"PBO:0064961"}


id: GO:0052814
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a medium-chain fatty aldehyde + H2O + NAD+ = a medium chain fatty acid + 2 H+ + NADH.","definition_xrefs":["RHEA:69763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty aldehyde dehydrogenase (NAD+) activity","termid":"GO:0102673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"medium-chain fatty aldehyde dehydrogenase (NAD+) activity","synonyms":[{"name":"medium-chain aliphatic aldehyde dehydrogenase activity","type":"related"},{"name":"medium-chain fatty aldehyde dehydrogenase activity","type":"related"},{"name":"medium-chain-aldehyde dehydrogenase activity","type":"exact"},{"name":"medium-chain-aldehyde:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0052814"}


id: PBO:0062179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily M member 2B","termid":"PBO:0062179"}


id: PBO:0083124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dolichyl-phosphoglucose-dependent alpha-1,2-glucosyltransferase; located in the ER; functions in pathway that synthesizes the dolichol-linked oligosaccharide precursor for N-linked protein glycosylation; has a role in regulation of ITR1 and INO1; human homolog ALG10B can complement yeast die2 null mutant","termid":"PBO:0083124"}


id: PBO:0045805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDRF1 divergent transcript","termid":"PBO:0045805"}


id: PBO:0043144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 12","termid":"PBO:0043144"}


id: PBO:0089886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Myb family protein, RNA polymerase I termination factor Eta2","termid":"PBO:0089886"}


id: MONDO:0032610
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 5","secondary_identifiers":["DOID:0112068","MEDGEN:1648292","OMIM:618226","UMLS:C4748754","GARD:16315"],"synonyms":[{"name":"MC1DN5","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 5","type":"related"}],"termid":"MONDO:0032610","xrefs":{"Monarch":{"xref_id":"0032610"}}}


id: SO:0000133
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_attribute","termid":"SO:0000401"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epigenetically_modified","synonyms":[{"name":"epigenetically modified","type":"exact"}],"termid":"SO:0000133"}


id: PBO:0056770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 21C, AARS1 lysine","termid":"PBO:0056770"}


id: PBO:0071822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 17","termid":"PBO:0071822"}


id: MONDO:0000871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute lymphoblastic leukemia of T-cell origin occurring in children.","definition_xrefs":["NCIT:C7953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"childhood acute lymphoblastic leukemia","termid":"MONDO:0000870"},{"relation_name":"is_a","term_name":"childhood precursor T-lymphoblastic lymphoma/leukemia","termid":"MONDO:0004403"},{"relation_name":"is_a","term_name":"T-cell acute lymphoblastic leukemia","termid":"MONDO:0004963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"T-cell childhood acute lymphocytic leukemia","secondary_identifiers":["DOID:0080145","UMLS:C0279583","EFO:1001947","MEDGEN:75996"],"synonyms":[{"name":"T acute lymphoblastic leukaemia","type":"broad"},{"name":"T acute lymphoblastic leukemia","type":"broad"},{"name":"T-cell childhood ALL","type":"exact"},{"name":"T-cell childhood acute lymphoblastic leukaemia","type":"exact"},{"name":"T-cell childhood acute lymphoblastic leukemia","type":"exact"},{"name":"T-cell childhood acute lymphocytic leukemia","type":"exact"},{"name":"T-cell paediatric ALL","type":"exact"},{"name":"T-cell paediatric acute lymphoblastic leukaemia","type":"exact"},{"name":"T-cell paediatric acute lymphocytic leukaemia","type":"exact"},{"name":"T-cell pediatric ALL","type":"exact"},{"name":"T-cell pediatric acute lymphoblastic leukemia","type":"exact"},{"name":"T-cell pediatric acute lymphocytic leukemia","type":"exact"},{"name":"childhood T acute lymphoblastic leukaemia","type":"exact"},{"name":"childhood T acute lymphoblastic leukemia","type":"exact"},{"name":"childhood T-ALL","type":"exact"},{"name":"childhood T-cell acute lymphoblastic leukaemia","type":"exact"},{"name":"childhood T-cell acute lymphoblastic leukemia","type":"exact"},{"name":"childhood precursor T-lymphoblastic leukaemia","type":"exact"},{"name":"childhood precursor T-lymphoblastic leukemia","type":"exact"}],"termid":"MONDO:0000871","xrefs":{"Monarch":{"xref_id":"0000871"}}}


id: MONDO:1012498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary open angle glaucoma, non-human animal","termid":"MONDO:1011998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary open angle glaucoma, dog","secondary_identifiers":["OMIA:002046-9615"],"termid":"MONDO:1012498","xrefs":{"Monarch":{"xref_id":"1012498"}}}


id: GO:0039649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a virus effects a change in host ubiquitin-protein ligase activity. Ubiquitin-protein ligase activity catalyzes the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.","definition_xrefs":["UniProtKB-KW:KW-1123"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host ubiquitin-protein ligase activity (obsolete GO:0039649)","synonyms":[{"name":"modulation of host E3 ubiquitin ligases by virus","type":"narrow"}],"termid":"GO:0039649"}


id: GO:0001508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which membrane potential cycles through a depolarizing spike, triggered in response to depolarization above some threshold, followed by repolarization. This cycle is driven by the flow of ions through various voltage gated channels with different thresholds and ion specificities.","definition_xrefs":["GOC:dph","GOC:tb","GOC:go_curators","ISBN:978-0-07-139011-8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"action potential","termid":"GO:0001508"}


id: MONDO:0011441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complex regional pain syndrome type 1 (CRPS1) is a form of complex regional pain syndrome in which the pain is disproportionate to any known inciting event and is characterized by continuous pain, allodynia, or hyperalgesia as well as edema, coloration (changes in skin blood flow), or abnormal sudomotor activity in the region of pain. Onset of CRPS1 symptoms may occur within a few days to a month after an injury or trauma to the affected limb.","definition_xrefs":["Orphanet:99995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"complex regional pain syndrome","termid":"MONDO:0019369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex regional pain syndrome type 1","secondary_identifiers":["ICD9:337.20","GARD:16928","DOID:1811","MESH:D012019","OMIM:604335","SCTID:50642008","ICD9:337.2","ICD10CM:M89.0","ICD9:733.7","MEDGEN:11159","ICD9:337.29","ICD10CM:G90.5","MedDRA:10038249","NCIT:C85042","ICD9:337.21","MedDRA:10064334","EFO:1001147","UMLS:C0034931"],"synonyms":[{"name":"Algodystrophy","type":"exact"},{"name":"CRPS I","type":"exact"},{"name":"CRPS1","type":"exact"},{"name":"Complex regional pain syndrome I","type":"exact"},{"name":"RND","type":"exact"},{"name":"RSDS","type":"exact"},{"name":"complex regional pain syndrome type 1","type":"exact"},{"name":"reflex neurovascular dystrophy","type":"exact"},{"name":"reflex sympathetic dystrophy","type":"exact"},{"name":"reflex sympathetic dystrophy syndrome","type":"exact"}],"termid":"MONDO:0011441","xrefs":{"Monarch":{"xref_id":"0011441"}}}


id: PBO:0090306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-ribosomal factor","termid":"PBO:0090306"}


id: MONDO:0030407
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare disease with Cushing syndrome as a major feature (obsolete MONDO:0030407)","termid":"MONDO:0030407","xrefs":{"Monarch":{"xref_id":"0030407"}}}


id: PBO:0080662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 8","termid":"PBO:0080662"}


id: GO:0098895
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a postsynaptic endosome.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome membrane","termid":"GO:0010008"},{"relation_name":"part_of","term_name":"postsynaptic endosome","termid":"GO:0098845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410","GO:0005768"],"is_obsolete":false,"name":"postsynaptic endosome membrane","termid":"GO:0098895"}


id: FYPO:0000217
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which DNA replication is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolism phenotype","termid":"FYPO:0000293"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000293","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal DNA replication","synonyms":[{"name":"abnormal DNA-dependent DNA replication","type":"exact"}],"termid":"FYPO:0000217"}


id: PBO:0057217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 378e","termid":"PBO:0057217"}


id: GO:1990636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A life cycle stage during which the reproductive capacity and fitness of an organism declines.","definition_xrefs":["PMID:27353257","PMID:25523082","PMID:24914937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological phase","termid":"GO:0044848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reproductive senescence","synonyms":[{"name":"ovarian senescence","type":"narrow"}],"termid":"GO:1990636"}


id: MONDO:0032735
data:
  {"annotated_genes":["SJAG_02645","SJAG_03581"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89117,89118],"is_not":false,"summary":null,"term":"MONDO:0032735"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02645":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 48","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070354","UMLS:C5193082","GARD:16350","OMIM:618415","MEDGEN:1684457"],"synonyms":[{"name":"CATARACT 48","type":"related"},{"name":"CTRCT48","type":"related"}],"termid":"MONDO:0032735","terms_by_termid":{"MONDO:0032735":null},"xrefs":{"Monarch":{"xref_id":"0032735"}}}


id: MONDO:0004908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete galactosemia (obsolete MONDO:0004908)","termid":"MONDO:0004908","xrefs":{"Monarch":{"xref_id":"0004908"}}}


id: PBO:0066926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 228","termid":"PBO:0066926"}


id: GO:2000324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nuclear receptor-mediated glucocorticoid signaling pathway.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular steroid hormone receptor signaling pathway","termid":"GO:0033145"},{"relation_name":"is_a","term_name":"regulation of nuclear receptor-mediated glucocorticoid signaling pathway","termid":"GO:2000322"},{"relation_name":"positively_regulates","term_name":"nuclear receptor-mediated glucocorticoid signaling pathway","termid":"GO:0042921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nuclear receptor-mediated glucocorticoid signaling pathway","synonyms":[{"name":"positive regulation of glucocorticoid receptor signaling pathway","type":"exact"},{"name":"positive regulation of glucocorticoid receptor signalling pathway","type":"exact"}],"termid":"GO:2000324"}


id: GO:0016032
data:
  {"annotated_genes":["SJAG_04546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67290],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0075523"}]},"cv_name":"biological_process","definition":"A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.","definition_xrefs":["GOC:mah","GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_process","termid":"GO:0008150"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04546":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral process","references_by_uniquename":{"GO_REF:0000043":null},"secondary_identifiers":["Reactome:R-HSA-162906","Wikipedia:Viral_life_cycle","GO:0022415"],"synonyms":[{"name":"viral infection","type":"related"},{"name":"virulence","type":"related"},{"name":"virus process","type":"exact"}],"termid":"GO:0016032","terms_by_termid":{"GO:0075523":null}}


id: PBO:0073778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 4 member 11","termid":"PBO:0073778"}


id: FYPO:0000697
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abnormal DNA-7-methylguanine glycosylase activity","termid":"FYPO:0000697"}


id: PBO:0046659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extra spindle pole bodies like 1, separase","termid":"PBO:0046659"}


id: MONDO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete wound botulism (obsolete MONDO:0000318)","termid":"MONDO:0000318","xrefs":{"Monarch":{"xref_id":"0000318"}}}


id: GO:0035821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism effects a change in a biological process in another organism.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in interspecies interaction between organisms","termid":"GO:0044419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of process of another organism","synonyms":[{"name":"modification of morphology or physiology of other organism","type":"exact"},{"name":"modulation of process of other organism","type":"exact"},{"name":"regulation of morphology of other organism","type":"narrow"},{"name":"regulation of morphology or physiology of other organism","type":"related"},{"name":"regulation of physiological process of other organism","type":"narrow"},{"name":"regulation of physiology of other organism","type":"narrow"}],"termid":"GO:0035821"}


id: FYPO:0006835
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glucan endo-1,3-beta-glucanase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal glucan endo-1,3-beta-glucanase activity","synonyms":[{"name":"normal glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group","type":"exact"}],"termid":"FYPO:0006835"}


id: GO:0034898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: hexadecyltrimethylammonium chloride + NAD(P)H + H+ + O2 = trimethylamine + hexadecanal + NAD(P)+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r1373"],"gene_count":0,"genotype_count":0,"name":"obsolete hexadecyltrimethylammonium chloride monooxygenase activity (obsolete GO:0034898)","termid":"GO:0034898"}


id: PBO:0117087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP2R1A antisense RNA 1","termid":"PBO:0117087"}


id: MONDO:0957594
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 87","secondary_identifiers":["UMLS:C5882687","MEDGEN:1852637","OMIM:620500","DOID:0070586"],"termid":"MONDO:0957594","xrefs":{"Monarch":{"xref_id":"0957594"}}}


id: GO:0072329
data:
  {"annotated_genes":["SJAG_00706","SJAG_03804","SJAG_00281","SJAG_01432","SJAG_04570","SJAG_02763"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001561"},{"annotations":[73332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009062"},{"annotations":[107118,103051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009436"},{"annotations":[82344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903457"},{"annotations":[115822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042758"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00281":null,"SJAG_00706":null,"SJAG_01432":null,"SJAG_02763":null,"SJAG_03804":null,"SJAG_04570":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"monocarboxylic acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0072329","terms_by_termid":{"GO:0001561":null,"GO:0009062":null,"GO:0009436":null,"GO:0042758":null,"GO:1903457":null}}


id: PBO:0038499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 8","termid":"PBO:0038499"}


id: PBO:0080744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XIAP associated factor 1","termid":"PBO:0080744"}


id: PBO:0081189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zic family member 2","termid":"PBO:0081189"}


id: GO:0075329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"modulation of formation of structure involved in a symbiotic process","termid":"GO:0044145"},{"relation_name":"is_a","term_name":"regulation of feeding behavior","termid":"GO:0060259"},{"relation_name":"regulates","term_name":"formation of arbuscule for nutrient acquisition","termid":"GO:0075328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of arbuscule formation for nutrient acquisition from host","termid":"GO:0075329"}


id: PBO:0067595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 757, pseudogene","termid":"PBO:0067595"}


id: GO:0045484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-lysine = L-glutamate + allysine.","definition_xrefs":["EC:2.6.1.36","RHEA:21200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016769","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"L-lysine 6-transaminase activity","secondary_identifiers":["KEGG_REACTION:R00457","MetaCyc:L-LYSINE-AMINOTRANSFERASE-RXN"],"synonyms":[{"name":"L-lysine aminotransferase activity","type":"related"},{"name":"L-lysine transaminase activity","type":"related"},{"name":"L-lysine-alpha-ketoglutarate 6-aminotransferase activity","type":"related"},{"name":"L-lysine-alpha-ketoglutarate aminotransferase activity","type":"related"},{"name":"L-lysine:2-oxoglutarate 6-aminotransferase activity","type":"related"},{"name":"lysine 6-aminotransferase activity","type":"exact"},{"name":"lysine epsilon-aminotransferase activity","type":"related"},{"name":"lysine epsilon-transaminase activity","type":"related"},{"name":"lysine:2-ketoglutarate 6-aminotransferase activity","type":"related"}],"termid":"GO:0045484"}


id: GO:0070948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a target cell, the directed killing of a target cell by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated cytotoxicity","termid":"GO:0001910"},{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"regulates","term_name":"neutrophil mediated cytotoxicity","termid":"GO:0070942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neutrophil mediated cytotoxicity","synonyms":[{"name":"regulation of neutrophil mediated cell killing","type":"exact"}],"termid":"GO:0070948"}


id: PBO:0062777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 56 subfamily A member 5","termid":"PBO:0062777"}


id: PBO:0067393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 498, pseudogene","termid":"PBO:0067393"}


id: GO:0090382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.","definition_xrefs":["GOC:tb","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phagosome maturation","termid":"GO:0090382"}


id: MONDO:0006377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant mesothelioma that arises from the pleura. It is characterized by the presence of epithelioid and sarcomatoid components, with each component representing at least 10% of the tumor.","definition_xrefs":["NCIT:C45665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant biphasic mesothelioma","termid":"MONDO:0006109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pleural biphasic mesothelioma","secondary_identifiers":["MEDGEN:311130","EFO:1000483","UMLS:C1709570"],"synonyms":[{"name":"pleural biphasic mesothelioma","type":"exact"}],"termid":"MONDO:0006377","xrefs":{"Monarch":{"xref_id":"0006377"}}}


id: PBO:0063983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 17","termid":"PBO:0063983"}


id: PBO:0090949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit Sen15","termid":"PBO:0090949"}


id: GO:0098002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The processes by which a bacteriophage initially commits to infection by binding the host receptor irreversibly. Disruption of the phage:cell complex at this step results in the loss of infective phage virions since the process is characterized by conformational changes of bacteriophage head and tail proteins and injection of bacteriophage proteins into the infected cell.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entry receptor-mediated virion attachment to host cell","termid":"GO:0098670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"receptor-mediated bacteriophage irreversible attachment to host cell","synonyms":[{"name":"irreversible bacteriophage attachment, binding of host cell surface receptor","type":"exact"},{"name":"phage irreversible adsorption","type":"related"}],"termid":"GO:0098002"}


id: GO:0044687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E,10E)-geranylgeranyl diphosphate + isopentenyl diphosphate = (2E,6E,10E,14E)-geranylfarnesyl diphosphate + diphosphate.","definition_xrefs":["RHEA:25694","PMID:20097171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyl diphosphate synthase activity","termid":"GO:0120531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016765"],"is_obsolete":false,"name":"geranylfarnesyl diphosphate synthase activity","secondary_identifiers":["EC:2.5.1.81","MetaCyc:RXN-8813"],"synonyms":[{"name":"FGPP synthase activity","type":"exact"}],"termid":"GO:0044687"}


id: GO:0033255
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that possesses histone acetyltransferase activity and links histone acetylation to the assembly of transcriptionally silent chromatin. In vitro, the complex acetylates lysine 16 of histone H4 and lysine 14 of histone H3, although the latter may not be relevant in vivo. The complex contains a catalytic subunit and at least two other subunits; in Saccharomyces, the catalytic subunit is Sas2p and additional subunits are Sas4p and Sas5p.","definition_xrefs":["PMID:15788653","PMID:11731480","PMID:12626510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"piccolo histone acetyltransferase complex","termid":"GO:0032777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"SAS acetyltransferase complex","synonyms":[{"name":"SAS-I complex","type":"exact"}],"termid":"GO:0033255"}


id: PBO:0068920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 163, pseudogene","termid":"PBO:0068920"}


id: PBO:0003332
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CocKayNe syndrome 1","termid":"PBO:0003332"}


id: MONDO:0012094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 4","secondary_identifiers":["GARD:15440","MEDGEN:325204","MESH:C563882","OMIM:608658","UMLS:C1837593"],"synonyms":[{"name":"HPC4","type":"related"},{"name":"prostate cancer, hereditary, 4","type":"exact"},{"name":"prostate cancer, hereditary, on chromosome 7","type":"related"},{"name":"prostate cancer, hereditary, type 4","type":"exact"},{"name":"prostate cancer, susceptibility to, 4","type":"exact"}],"termid":"MONDO:0012094","xrefs":{"Monarch":{"xref_id":"0012094"}}}


id: MONDO:0000258
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete intestinal botulism (obsolete MONDO:0000258)","termid":"MONDO:0000258","xrefs":{"Monarch":{"xref_id":"0000258"}}}


id: FYPO:0005988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which microtubule anchoring at the cell cortex of the cell tip does not occur during the meiotic cell cycle. Normally, anchoring maintains the localization of microtubules with their plus ends at the cell cortex.","definition_xrefs":["PomBase:mah","PMID:25736293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip","termid":"FYPO:0005987"},{"relation_name":"is_a","term_name":"localization phenotype during meiotic cell cycle","termid":"FYPO:0006393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000054","FYPO:0000002"],"is_obsolete":false,"name":"abolished microtubule anchoring at cell cortex of cell tip during meiotic cell cycle","synonyms":[{"name":"abolished microtubule anchoring at cell tip cortex during meiotic cell cycle","type":"exact"},{"name":"abolished microtubule cortical anchoring at cell tip during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0005988"}


id: GO:0010137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ureide, the organic form of nitrogen in nitrogen fixing and transporting plants, from IMP, which is synthesized de novo during nitrogen fixation by roots.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureide biosynthetic process","synonyms":[{"name":"ureide anabolism","type":"exact"},{"name":"ureide biosynthesis","type":"exact"},{"name":"ureide formation","type":"exact"},{"name":"ureide synthesis","type":"exact"}],"termid":"GO:0010137"}


id: PBO:0069653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 930, pseudogene","termid":"PBO:0069653"}


id: PBO:0066434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulated endocrine specific protein 18","termid":"PBO:0066434"}


id: PBO:0065013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRDM16 divergent transcript","termid":"PBO:0065013"}


id: GO:0014065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.","definition_xrefs":["Wikipedia:PI3K","PMID:22525052","GOC:ef"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase signaling (obsolete GO:0014065)","synonyms":[{"name":"PI 3-kinase cascade","type":"exact"},{"name":"PI3K cascade","type":"exact"},{"name":"PI3K signal transduction","type":"exact"},{"name":"PI3K signaling","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade","type":"related"},{"name":"phosphatidylinositol 3-kinase signal transduction","type":"exact"},{"name":"phosphoinositide 3-kinase cascade","type":"exact"}],"termid":"GO:0014065"}


id: GO:0009213
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate catabolic process","termid":"GO:0009149"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009211"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleoside triphosphate catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"pyrimidine deoxyribonucleoside triphosphate breakdown","type":"exact"},{"name":"pyrimidine deoxyribonucleoside triphosphate catabolism","type":"exact"},{"name":"pyrimidine deoxyribonucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009213","terms_by_termid":{"GO:0046081":null}}


id: MONDO:1010771
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bullous pemphigoid that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bullous pemphigoid, non-human animal","termid":"MONDO:1010137"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bullous pemphigoid, pig","secondary_identifiers":["OMIA:001183-9823"],"termid":"MONDO:1010771","xrefs":{"Monarch":{"xref_id":"1010771"}}}


id: GO:0005107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete GPI-linked ephrin (obsolete GO:0005107)","synonyms":[{"name":"GPI-linked ephrin","type":"exact"}],"termid":"GO:0005107"}


id: PBO:0045114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublesex and mab-3 related transcription factor 1","termid":"PBO:0045114"}


id: PR:O74458
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A general transcription factor 3C polypeptide 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04416","PANTHER:PTHR23082:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor tau subunit sfc4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.14c","secondary_identifiers":["UniProtKB:O74458"],"synonyms":[{"name":"Spom972h-GTF3C3","type":"exact"},{"name":"TFIIIC subunit sfc4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription factor C subunit 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74458"}


id: PBO:0072253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 28","termid":"PBO:0072253"}


id: PBO:0051591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL20RB antisense RNA 1","termid":"PBO:0051591"}


id: GO:0060273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"crying behavior","termid":"GO:0060273"}


id: PBO:0084879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosome-associated protein; regulates mitochondrial DNA copy number and the size and distribution of mtDNA nucleoids; subunit of a complex containing Pet20p, Mam33p, and Pim1p that may regulate mtDNA replication; member of the PET20 domain-containing protein family; forms foci that partially co-localize with mtDNA","termid":"PBO:0084879"}


id: PBO:0027774
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_viridicatumtoxin","termid":"PBO:0027774"}


id: GO:0004732
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:  pyridoxal + H2O + O2 = 4-pyridoxate + H+ + H2O2.","definition_xrefs":["RHEA:23724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde oxidase activity","termid":"GO:0004031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"pyridoxal oxidase activity","secondary_identifiers":["EC:1.2.3.8","MetaCyc:PYRIDOXAL-OXIDASE-RXN"],"synonyms":[{"name":"pyridoxal:oxygen 4-oxidoreductase activity","type":"related"}],"termid":"GO:0004732"}


id: PATO:0001095
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001095 force value (obsolete PATO:0001095)","termid":"PATO:0001095"}


id: PBO:0077805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOX high mobility group box family member 3","termid":"PBO:0077805"}


id: MONDO:0800066
data:
  {"annotated_genes":["SJAG_01213"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010408"}]},"cv_name":"mondo","definition":"Any skeletal dysplasia that is characterizedby polydactyly, syndactyly and triphalangism, where a digit has three phalanges instead of two.","definition_xrefs":["PMID:31633310","PMID:19125433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"syndactyly","termid":"MONDO:0021002"},{"relation_name":"is_a","term_name":"polydactyly","termid":"MONDO:0021003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01213":null},"genotype_count":0,"is_obsolete":false,"name":"polydactyly-syndactyly-triphalangism","references_by_uniquename":{"PB_REF:0000006":null},"termid":"MONDO:0800066","terms_by_termid":{"MONDO:0010408":null},"xrefs":{"Monarch":{"xref_id":"0800066"}}}


id: PBO:0090056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erp2/3/4","termid":"PBO:0090056"}


id: PBO:0050564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRG pseudogene 2","termid":"PBO:0050564"}


id: FYPO:0006482
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cohesin ssDNA (lagging strand) loading is normal (i.e. indistinguishable from wild type) during the mitotic cell cycle. Cohesin ssDNA (lagging strand) loading is the topological linking of a cohesin ring complex to single-stranded DNA, i.e. the lagging strand, in chromatin.","definition_xrefs":["GO:0062022","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cohesin loading","termid":"FYPO:0006480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal mitotic cohesin ssDNA (lagging strand) loading","synonyms":[{"name":"normal cohesin ssDNA (lagging strand) loading during mitotic cell cycle","type":"exact"},{"name":"normal cohesin ssDNA (lagging strand) loading during vegetative growth","type":"exact"},{"name":"normal mitotic cohesin association with ssDNA (lagging strand) chromatin","type":"exact"},{"name":"normal mitotic cohesin localization to ssDNA (lagging strand) chromatin","type":"exact"},{"name":"normal second-DNA capture","type":"exact"}],"termid":"FYPO:0006482"}


id: PBO:0062211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AK member 2","termid":"PBO:0062211"}


id: MONDO:0001308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal deposit","secondary_identifiers":["UMLS:C0162281","MEDGEN:511537","ICD9:371.10","DOID:11547","icd11.foundation:1760427912","ICD10CM:H18.0","SCTID:74460005"],"synonyms":[{"name":"deposits - cornea","type":"exact"}],"termid":"MONDO:0001308","xrefs":{"Monarch":{"xref_id":"0001308"}}}


id: GO:0014813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a satellite cell.","definition_xrefs":["GOC:mtg_muscle","PMID:16607119","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"skeletal muscle satellite cell differentiation","termid":"GO:0014816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle satellite cell commitment","termid":"GO:0014813"}


id: PBO:0066503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory factor X1","termid":"PBO:0066503"}


id: GO:0110086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the meiotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the meiotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In fungal cells, the meiotic contractile ring forms beneath the plasma membrane of the prospore envelope in preparation for completing cytokinesis.","definition_xrefs":["GOC:vw","PMID:22526418"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin contractile ring","termid":"GO:0005826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0070938"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005938","GO:0015629","GO:0005575","GO:0070938","GO:0005737"],"is_obsolete":false,"name":"meiotic actomyosin contractile ring","termid":"GO:0110086"}


id: PBO:0048774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-mannose pyrophosphorylase A","termid":"PBO:0048774"}


id: PBO:0089884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Hsp20 family","termid":"PBO:0089884"}


id: GO:0038011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which internalization of a signaling receptor stops, prevents, or reduces the frequency, rate or extent of signal transduction. Receptor internalization can attenuate or reduce the strength of signaling by reducing the concentration of cell surface receptors available to ligands.","definition_xrefs":["PMID:17908284","GOC:signaling","GOC:bf","PMID:19696798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of signal transduction by receptor internalization","termid":"GO:0038009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0023052","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"negative regulation of signal transduction by receptor internalization","synonyms":[{"name":"negative regulation of signaling pathway by receptor endocytosis","type":"exact"}],"termid":"GO:0038011"}


id: MONDO:0030941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"erythrokeratodermia variabilis","termid":"MONDO:0017851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"erythrokeratodermia variabilis et progressiva 7","secondary_identifiers":["UMLS:C5543106","GARD:18674","MEDGEN:1780408","OMIM:619209"],"synonyms":[{"name":"EKVP7","type":"exact"},{"name":"erythrokeratodermia variabilis et progressiva 7","type":"exact"}],"termid":"MONDO:0030941","xrefs":{"Monarch":{"xref_id":"0030941"}}}


id: PBO:0034339
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_branching_part","termid":"PBO:0034339"}


id: PBO:0001572
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.-","termid":"PBO:0001572"}


id: GO:0102741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,7-dimethylxanthine + S-adenosyl-L-methionine = H+ + caffeine + S-adenosyl-L-homocysteine. Also converts theobromine to caffeine and 7-methylxanthine to theobromine.","definition_xrefs":["EC:2.1.1.160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"caffeine synthase activity","synonyms":[{"name":"3N-methyltransferase activity","type":"related"},{"name":"dimethylxanthine methyltransferase activity","type":"related"},{"name":"paraxanthine:S-adenosyl-L-methionine 3-N-methyltransferase activity","type":"narrow"},{"name":"theobromine:S-adenosyl-L-methionine 1-N-methyltransferase activity","type":"narrow"}],"termid":"GO:0102741"}


id: GO:0110050
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-(4-oxoglutarate)-L-cysteinylglycine + H2O = 2-oxoglutarate + L-cysteinylglycine.","definition_xrefs":["GOC:ka","PMID:28373563","RHEA:54532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"deaminated glutathione amidase activity","secondary_identifiers":["EC:3.5.1.128"],"termid":"GO:0110050"}


id: PBO:0056815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 8","termid":"PBO:0056815"}


id: PBO:0000997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP1/OBG family","termid":"PBO:0000997"}


id: GO:0007193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway in which the signal is transmitted via the inhibition of adenylyl cyclase activity and a subsequent decrease in the intracellular concentration of cyclic AMP (cAMP).","definition_xrefs":["GOC:dph","GOC:signaling","ISBN:0815316194","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-modulating G protein-coupled receptor signaling pathway","termid":"GO:0007188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-170670"],"synonyms":[{"name":"G protein signaling, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"G protein signaling, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"G protein signalling, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"G protein signalling, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"G-protein signaling, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"G-protein signaling, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"G-protein signalling, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"G-protein signalling, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"GPCR signaling pathway via inhibition of adenylate cyclase activity","type":"exact"},{"name":"adenylate cyclase-inhibiting GPCR signaling pathway","type":"exact"},{"name":"inhibition of adenylate cyclase activity by G-protein signaling pathway","type":"related"}],"termid":"GO:0007193"}


id: GO:0021907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord.","definition_xrefs":["GOC:jid","GOC:cls","GOC:dgh","GO_REF:0000021","PMID:11262869","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"spinal cord anterior/posterior patterning","termid":"GO:0021512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in spinal cord anterior/posterior pattern formation","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway in spinal cord anterior-posterior patterning","type":"exact"}],"termid":"GO:0021907"}


id: PBO:0066779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 77","termid":"PBO:0066779"}


id: MONDO:0011961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary sensory and autonomic neuropathy, type 1B (HSAN1B) is characterized by the association of type 1 HSAN with paroxysmal cough and gastroesophageal reflux (GOR).","definition_xrefs":["Orphanet:139564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary sensory and autonomic neuropathy type 1","termid":"MONDO:0018213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005244","MONDO:0005066"],"is_obsolete":false,"name":"hereditary sensory and autonomic neuropathy type 1B","secondary_identifiers":["MEDGEN:330880","MESH:C564296","DOID:0070148","OMIM:608088","GARD:16958","PMID:12870133","PMID:16311270","SCTID:717825008","UMLS:C1842586"],"synonyms":[{"name":"HSAN with cough and gastroesophageal reflux","type":"exact"},{"name":"HSAN1B","type":"exact"},{"name":"hereditary sensory and autonomic neuropathy type 1 with cough and gastroesophageal reflux","type":"exact"},{"name":"hereditary sensory and autonomic neuropathy type IB","type":"exact"},{"name":"hereditary sensory neuropathy type 1B","type":"related"},{"name":"hereditary sensory neuropathy type IB","type":"exact"},{"name":"neuropathy, hereditary sensory and autonomic, type 1B","type":"related"},{"name":"neuropathy, hereditary sensory and autonomic, type I, with cough and gastroesophageal reflux","type":"related"},{"name":"neuropathy, hereditary sensory, type 1B","type":"related"},{"name":"neuropathy, hereditary sensory, type IB","type":"exact"}],"termid":"MONDO:0011961","xrefs":{"Monarch":{"xref_id":"0011961"}}}


id: GO:0061329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule principal cell. A Malpighian tubule principal cell is an epithelial secretory cell that transports cations into the lumen of the tubule.","definition_xrefs":["GOC:mtg_kidney_jan10","PMID:19783135","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"Malpighian tubule development","termid":"GO:0072002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Malpighian tubule principal cell differentiation","termid":"GO:0061329"}


id: PBO:0047427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc epsilon receptor Ig","termid":"PBO:0047427"}


id: PBO:0081551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF470 divergent transcript","termid":"PBO:0081551"}


id: GO:0061993
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in).","definition_xrefs":["GOC:bhm","PMID:19098009","PMID:28645169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"calcium:proton antiporter complex","synonyms":[{"name":"CAX1 homodimer","type":"narrow"},{"name":"CAX1-CAX3 complex","type":"narrow"},{"name":"CAX3 homodimer","type":"narrow"}],"termid":"GO:0061993"}


id: SO:0002119
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allelic_frequency","secondary_identifiers":["wikipedia:Allele_frequency"],"termid":"SO:0002119"}


id: GO:0003301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physiological muscle hypertrophy","termid":"GO:0003298"},{"relation_name":"is_a","term_name":"cardiac muscle hypertrophy","termid":"GO:0003300"},{"relation_name":"part_of","term_name":"cardiac muscle tissue growth","termid":"GO:0055017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"physiological cardiac muscle hypertrophy","termid":"GO:0003301"}


id: PBO:0083726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential 121 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in ER and Golgi inheritance in small buds; relocalizes away from bud neck upon DNA replication stress","termid":"PBO:0083726"}


id: SO:0000440
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A replicon that has been modified to act as a vector for foreign sequence.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"replicon","termid":"SO:0001235"},{"relation_name":"part_of","term_name":"clone","termid":"SO:0000151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vector_replicon","secondary_identifiers":["http://en.wikipedia.org/wiki/Vector_(molecular_biology)"],"synonyms":[{"name":"vector","type":"exact"},{"name":"vector replicon","type":"exact"}],"termid":"SO:0000440"}


id: PBO:0081622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 551","termid":"PBO:0081622"}


id: GO:1904750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to nucleolus.","definition_xrefs":["GOC:nc","GOC:TermGenie","GOC:BHF_telomere","GOC:BHF","PMID:24415760","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization to nucleus","termid":"GO:1900181"},{"relation_name":"is_a","term_name":"regulation of protein localization to nucleolus","termid":"GO:1904749"},{"relation_name":"negatively_regulates","term_name":"protein localization to nucleolus","termid":"GO:1902570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to nucleolus","synonyms":[{"name":"down regulation of protein localisation in nucleolus","type":"exact"},{"name":"down regulation of protein localisation to nucleolus","type":"exact"},{"name":"down regulation of protein localization in nucleolus","type":"exact"},{"name":"down regulation of protein localization to nucleolus","type":"exact"},{"name":"down-regulation of protein localisation in nucleolus","type":"exact"},{"name":"down-regulation of protein localisation to nucleolus","type":"exact"},{"name":"down-regulation of protein localization in nucleolus","type":"exact"},{"name":"down-regulation of protein localization to nucleolus","type":"exact"},{"name":"downregulation of protein localisation in nucleolus","type":"exact"},{"name":"downregulation of protein localisation to nucleolus","type":"exact"},{"name":"downregulation of protein localization in nucleolus","type":"exact"},{"name":"downregulation of protein localization to nucleolus","type":"exact"},{"name":"inhibition of protein localisation in nucleolus","type":"narrow"},{"name":"inhibition of protein localisation to nucleolus","type":"narrow"},{"name":"inhibition of protein localization in nucleolus","type":"narrow"},{"name":"inhibition of protein localization to nucleolus","type":"narrow"},{"name":"negative regulation of protein localisation in nucleolus","type":"exact"},{"name":"negative regulation of protein localisation to nucleolus","type":"exact"},{"name":"negative regulation of protein localization in nucleolus","type":"exact"}],"termid":"GO:1904750"}


id: RO:0002108
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between a muscle and a motor neuron that synapses to it via a type II bouton.","direct_ancestors":[{"relation_name":"is_a","term_name":"synapsed_by","termid":"RO:0002103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_by_via_type_II_bouton","termid":"RO:0002108"}


id: PBO:0081559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 483","termid":"PBO:0081559"}


id: MONDO:0006673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial neoplasm of the anterior pituitary gland in which the neoplastic cells stain positive with basic dyes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system hematopoietic neoplasm","termid":"MONDO:0003641"},{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"},{"relation_name":"is_a","term_name":"pituitary gland adenoma","termid":"MONDO:0006373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"pituitary gland basophil adenoma","secondary_identifiers":["MESH:D000237","NCIT:C2856","ICDO:8300/0","UMLS:C0001431","EFO:1000834","MEDGEN:1746","DOID:4542"],"synonyms":[{"name":"basophil adenoma","type":"related"},{"name":"basophilic adenoma","type":"exact"},{"name":"basophilic pituitary gland adenoma","type":"exact"},{"name":"mucoid cell adenoma","type":"exact"},{"name":"pituitary basophilic adenoma","type":"exact"},{"name":"pituitary gland basophilic adenoma","type":"exact"}],"termid":"MONDO:0006673","xrefs":{"Monarch":{"xref_id":"0006673"}}}


id: GO:0043368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death.","definition_xrefs":["ISBN:0781735149","PMID:12414722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell selection","termid":"GO:0045058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive T cell selection","synonyms":[{"name":"positive T lymphocyte selection","type":"exact"},{"name":"positive T-cell selection","type":"exact"},{"name":"positive T-lymphocyte selection","type":"exact"}],"termid":"GO:0043368"}


id: MONDO:0019596
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XY disorder of sex development due to testicular steroidogenesis defect (obsolete MONDO:0019596)","secondary_identifiers":["Orphanet:90787"],"synonyms":[{"name":"46,XY DSD due to testicular steroidogenesis defect","type":"exact"}],"termid":"MONDO:0019596","xrefs":{"Monarch":{"xref_id":"0019596"}}}


id: GO:0060783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane Smoothened-type protein in the mesenchymal cells of the prostate that contribute to the progression of the prostate over time. This process contributes to lung development.","definition_xrefs":["PMID:12221011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smoothened signaling pathway","termid":"GO:0007224"},{"relation_name":"part_of","term_name":"epithelial-mesenchymal signaling involved in prostate gland development","termid":"GO:0060738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"mesenchymal smoothened signaling pathway involved in prostate gland development","synonyms":[{"name":"mesenchymal hedgehog signaling pathway involved in prostate gland development","type":"exact"},{"name":"mesenchymal hh signaling pathway involved in prostate gland development","type":"exact"},{"name":"mesenchymal smoothened signalling pathway involved in prostate gland development","type":"exact"}],"termid":"GO:0060783"}


id: PBO:0002239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-hemoprotein reductase (predicted)","termid":"PBO:0002239"}


id: GO:1905490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of sensory neuron axon guidance.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:16516839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon guidance","termid":"GO:1902668"},{"relation_name":"is_a","term_name":"regulation of sensory neuron axon guidance","termid":"GO:1905489"},{"relation_name":"negatively_regulates","term_name":"sensory neuron axon guidance","termid":"GO:0097374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sensory neuron axon guidance","synonyms":[{"name":"down regulation of sensory neuron axon guidance","type":"exact"},{"name":"down-regulation of sensory neuron axon guidance","type":"exact"},{"name":"downregulation of sensory neuron axon guidance","type":"exact"},{"name":"inhibition of sensory neuron axon guidance","type":"narrow"}],"termid":"GO:1905490"}


id: PBO:0076976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transglutaminase 7","termid":"PBO:0076976"}


id: GO:0030062
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial tricarboxylic acid cycle enzyme complex (obsolete GO:0030062)","synonyms":[{"name":"TCA cycle enzyme complex","type":"broad"}],"termid":"GO:0030062"}


id: PBO:0043873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein 3 like 2","termid":"PBO:0043873"}


id: GO:0046491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-methylmalonyl-CoA, the L-enantiomer of 2-carboxypropanoyl-CoA. S-methylmalonyl-CoA is an intermediate in the beta oxidation of odd-numbered fatty acids in animals.","definition_xrefs":["GOC:jsg","GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA metabolic process","termid":"GO:0006637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"L-methylmalonyl-CoA metabolic process","synonyms":[{"name":"L-methylmalonyl-CoA metabolism","type":"exact"}],"termid":"GO:0046491"}


id: GO:0002143
data:
  {"annotated_genes":["SJAG_03616","SJAG_00358","SJAG_00186","SJAG_03896","SJAG_04113","SJAG_03932","SJAG_01302"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76025,76146,79480,119024,119265],"is_not":false,"summary":null,"term":"GO:0002143"},{"annotations":[96274,108914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"}]},"cv_name":"biological_process","definition":"The process in which a uridine residue at position 34 in the anticodon of a tRNA is post-transcriptionally thiolated at the C2 position. This process involves transfer of a sulfur from cysteine to position C2 by several steps.","definition_xrefs":["PMID:16871210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble uridine modification","termid":"GO:0002098"},{"relation_name":"is_a","term_name":"tRNA thio-modification","termid":"GO:0034227"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00358":null,"SJAG_01302":null,"SJAG_03616":null,"SJAG_03896":null,"SJAG_03932":null,"SJAG_04113":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble position uridine thiolation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA wobble uridine thiolation","type":"exact"},{"name":"wobble position s2U biosynthesis","type":"exact"}],"termid":"GO:0002143","terms_by_termid":{"GO:0002143":null,"GO:1990799":null}}


id: FYPO:0000874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation at centromere during vegetative growth","termid":"FYPO:0000867"},{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H3-K9 dimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3 K9 dimethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at centromere during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at centromere during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0000874"}


id: PBO:0043410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CKLF like MARVEL transmembrane domain containing 7","termid":"PBO:0043410"}


id: SO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A location where recombination or occurs during mitosis or meiosis.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_rearrangement_feature","termid":"SO:0000669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"specific_recombination_site","synonyms":[{"name":"specific recombination site","type":"exact"}],"termid":"SO:0000299"}


id: PBO:0076935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trefoil factor 3","termid":"PBO:0076935"}


id: PBO:0087611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex; required for Set1C stability and optimal activity; COMPASS methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination","termid":"PBO:0087611"}


id: MONDO:0009149
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ectodermal dysplasia-intellectual disability-central nervous system malformation syndrome is a rare, multiple developmental anomalies syndrome characterized by the triad of ectodermal dysplasia (mostly hypohidrotic with dry skin and reduced sweating and sparse, fair scalp hair, eyebrows and eyelashes), severe intellectual disability and variable central nervous system anomalies (cerebellar hypoplasia, dilatation of ventricles, corpus callosum agenesis, Dandy-Walker malformation). Distinct craniofacial dysmorphism with macrocephaly, frontal bossing, midfacial hypoplasia and high arched or cleft palate, as well as cryptorchidism, feeding difficulties and hypotonia, are associated. There have been no further descriptions in the literature since 1998.","definition_xrefs":["Orphanet:1812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia-intellectual disability-central nervous system malformation syndrome","secondary_identifiers":["GARD:16578","UMLS:C1857053","MESH:C565605","OMIM:225040","MEDGEN:347363"],"synonyms":[{"name":"ectodermal dysplasia, hypohidrotic, with hypothyroidism and agenesis of the corpus callosum","type":"related"}],"termid":"MONDO:0009149","xrefs":{"Monarch":{"xref_id":"0009149"}}}


id: GO:0045149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetoin, 3-hydroxy-2-butanone, often as part of a fermentation pathway or for use as a carbon source.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"secondary alcohol metabolic process","termid":"GO:1902652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"acetoin metabolic process","synonyms":[{"name":"acetoin metabolism","type":"exact"}],"termid":"GO:0045149"}


id: PBO:0081675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 596","termid":"PBO:0081675"}


id: MONDO:0011641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"baculum, congenital absence of","secondary_identifiers":["UMLS:C1853565","OMIM:606174","MEDGEN:344078"],"synonyms":[{"name":"Os penis, congenital absence of","type":"related"},{"name":"baculum, congenital absence of","type":"exact"}],"termid":"MONDO:0011641","xrefs":{"Monarch":{"xref_id":"0011641"}}}


id: PBO:0031585
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_G418","termid":"PBO:0031585"}


id: PBO:0113002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aminopeptidase yscII; may have role in obtaining leucine from dipeptide substrates; targeted to vacuole via Vps10p-dependent endosomal vacuolar protein sorting pathway; APE2 has a paralog, AAP1, that arose from the whole genome duplication","termid":"PBO:0113002"}


id: FYPO:0001045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of acid phosphatase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal acid phosphatase activity","termid":"FYPO:0001044"},{"relation_name":"is_a","term_name":"decreased phosphatase activity","termid":"FYPO:0004304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"decreased acid phosphatase activity","synonyms":[{"name":"reduced acid phosphatase activity","type":"exact"}],"termid":"FYPO:0001045"}


id: MONDO:0011140
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete benign familial neonatal-infantile seizures (obsolete MONDO:0011140)","termid":"MONDO:0011140","xrefs":{"Monarch":{"xref_id":"0011140"}}}


id: PBO:0058016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3942","termid":"PBO:0058016"}


id: PBO:0003892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cycloisomerase 2 family","termid":"PBO:0003892"}


id: FYPO:0004545
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of proteasome-mediated, ubiquitin-dependent protein degradation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"},{"relation_name":"is_a","term_name":"decreased proteolysis during vegetative growth","termid":"FYPO:0005443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"decreased proteasomal ubiquitin-dependent protein degradation","synonyms":[{"name":"decreased proteasomal ubiquitin-dependent protein breakdown","type":"exact"},{"name":"decreased proteasomal ubiquitin-dependent protein catabolic process","type":"exact"},{"name":"decreased proteasomal ubiquitin-dependent protein catabolism","type":"exact"},{"name":"decreased proteasomal ubiquitin-dependent protein degradation during mitotic cell cycle","type":"related"},{"name":"decreased proteasomal ubiquitin-dependent protein degradation during vegetative growth","type":"exact"},{"name":"decreased proteasome-mediated ubiquitin-dependent protein catabolic process","type":"exact"},{"name":"reduced proteasomal ubiquitin-dependent protein degradation","type":"exact"}],"termid":"FYPO:0004545"}


id: GO:0031122
data:
  {"annotated_genes":["SJAG_02040","SJAG_02509","SJAG_03052","SJAG_03540","SJAG_01215","SJAG_01756","SJAG_02737","SJAG_04841","SJAG_02286","SJAG_00856","SJAG_02886","SJAG_03835","SJAG_01613","SJAG_04074","SJAG_00918","SJAG_04003","SJAG_02695","SJAG_02761","SJAG_02609"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69812,73103,73533,81945,89763,98984,101231,102105,104338,104460,109460,114186,119256,120743],"is_not":false,"summary":null,"term":"GO:0031122"},{"annotations":[78206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060172"},{"annotations":[119006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030954"},{"annotations":[102398,108477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030953"},{"annotations":[109539],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043622"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"},{"relation_name":"is_a","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_00918":null,"SJAG_01215":null,"SJAG_01613":null,"SJAG_01756":null,"SJAG_02040":null,"SJAG_02286":null,"SJAG_02509":null,"SJAG_02609":null,"SJAG_02695":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02886":null,"SJAG_03052":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_04003":null,"SJAG_04074":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0000226","GO:0007010"],"is_obsolete":false,"name":"cytoplasmic microtubule organization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic microtubule organisation","type":"exact"},{"name":"cytoplasmic microtubule organization and biogenesis","type":"related"}],"termid":"GO:0031122","terms_by_termid":{"GO:0030953":null,"GO:0030954":null,"GO:0031122":null,"GO:0043622":null,"GO:0060172":null}}


id: PR:O13831
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophan synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19A8.15","synonyms":[{"name":"Spom972h-trp2","type":"exact"}],"termid":"PR:O13831"}


id: PBO:0005404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial morphology protein (predicted)","termid":"PBO:0005404"}


id: FYPO:0006994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromere outer repeat regions is increased at the left outer repeat region (otr1L) of the centromere.","definition_xrefs":["PMID:26518661","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin silencing at centromere outer repeat","termid":"FYPO:0006299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased chromatin silencing at centromere otr1L","synonyms":[{"name":"increased centromere outer repeat region chromatin silencing at otr1L","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at centromere otr1L during vegetative growth","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L region","type":"exact"},{"name":"increased chromatin silencing at centromeric otr1L","type":"exact"},{"name":"increased chromatin silencing at pericentric region otr1L","type":"related"},{"name":"increased chromatin silencing at pericentromeric region otr1L","type":"related"},{"name":"increased heterochromatic silencing at centromere otr1L","type":"exact"},{"name":"increased heterochromatin silencing at centromere otr1L","type":"exact"}],"termid":"FYPO:0006994"}


id: PBO:0048773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geminin DNA replication inhibitor","termid":"PBO:0048773"}


id: GO:0061644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained at, CENP-A containing chromatin.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to chromatin","termid":"GO:0071168"},{"relation_name":"is_a","term_name":"protein localization to chromosome, centromeric region","termid":"GO:0071459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to CENP-A containing chromatin","termid":"GO:0061644"}


id: PBO:0074028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 16","termid":"PBO:0074028"}


id: MOD:00654
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"a protein modification that effectively replaces a sulfanyl group with a methylsulfanyl group","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"S-methylated residue","synonyms":[{"name":"SMeRes","type":"exact"}],"termid":"MOD:00654"}


id: PBO:0048845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosamine-phosphate N-acetyltransferase 1","termid":"PBO:0048845"}


id: MONDO:0007984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome is characterized by metaphyseal dysplasia associated with short stature and facial dysmorphism (a beaked nose, short philtrum, thin lips, maxillary hypoplasia, dystrophic yellowish teeth) and acral anomalies (short fifth metacarpals and/or short middle phalanges of fingers two and five). It has been described in several members spanning four generations of a French-Canadian family. The syndrome is likely to be transmitted as an autosomal dominant trait.","definition_xrefs":["Orphanet:2504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome","secondary_identifiers":["DOID:0111513","OMIM:156510","UMLS:C3549874","MEDGEN:762788","GARD:3568"],"synonyms":[{"name":"MDMHB","type":"related"},{"name":"metaphyseal dysplasia maxillary hypoplasia brachydactyly","type":"related"},{"name":"metaphyseal dysplasia with maxillary hypoplasia with or without brachydactyly","type":"related"}],"termid":"MONDO:0007984","xrefs":{"Monarch":{"xref_id":"0007984"}}}


id: GO:0047123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + H2O + quinoline-4-carboxylate = 2-oxo-1,2-dihydroquinoline-4-carboxylate + AH(2).","definition_xrefs":["EC:1.3.99.19","RHEA:14949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"quinoline-4-carboxylate 2-oxidoreductase activity","secondary_identifiers":["MetaCyc:1.3.99.19-RXN","KEGG_REACTION:R05183"],"synonyms":[{"name":"quinoline-4-carboxylate:acceptor 2-oxidoreductase (hydroxylating)","type":"related"},{"name":"quinoline-4-carboxylic acid 2-oxidoreductase activity","type":"related"}],"termid":"GO:0047123"}


id: PBO:0031408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_cell","termid":"PBO:0031408"}


id: PBO:0091431
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3 kb of 36 amino acid repeat","termid":"PBO:0091431"}


id: PBO:0055807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidylcholine acyltransferase 2b, pseudogene","termid":"PBO:0055807"}


id: PATO:0000442
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.","definition_xrefs":["WordNet:WordNet"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000442 insomnia (obsolete PATO:0000442)","termid":"PATO:0000442"}


id: PBO:0059654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 20","termid":"PBO:0059654"}


id: GO:0023052
data:
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id: GO:0046121
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleoside metabolic process","termid":"GO:0009120"},{"relation_name":"is_a","term_name":"nucleoside catabolic process","termid":"GO:0009164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"deoxyribonucleoside catabolic process","synonyms":[{"name":"deoxyribonucleoside breakdown","type":"exact"},{"name":"deoxyribonucleoside catabolism","type":"exact"},{"name":"deoxyribonucleoside degradation","type":"exact"}],"termid":"GO:0046121"}


id: FYPO:0006528
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of hydrolysis of peptide bonds within a protein is decreased during the meiotic cell cycle. All proteolysis may be affected, or only cleavage of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased proteolysis","termid":"FYPO:0006527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"decreased proteolysis during meiotic cell cycle","synonyms":[{"name":"decreased peptidolysis during meiotic cell cycle","type":"exact"},{"name":"decreased protein cleavage during meiotic cell cycle","type":"related"},{"name":"reduced proteolysis during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006528"}


id: PBO:0087053
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L25; primary rRNA-binding ribosomal protein component of large ribosomal subunit; binds to 25S rRNA via a conserved C-terminal motif; homologous to mammalian ribosomal protein L23A and bacterial L23","termid":"PBO:0087053"}


id: PBO:0085267
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate","termid":"PBO:0085267"}


id: PBO:0116766
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC33 antisense RNA 1","termid":"PBO:0116766"}


id: MONDO:0016409
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Primary congenital hypothyroidism is a type of permanent congenital hypothyroidism, a permanent thyroid hormone deficiency that is present from birth.","definition_xrefs":["Orphanet:226295"],"gene_count":0,"genotype_count":0,"name":"obsolete primary congenital hypothyroidism (obsolete MONDO:0016409)","termid":"MONDO:0016409","xrefs":{"Monarch":{"xref_id":"0016409"}}}


id: PR:O14165
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pseudouridine-5'-phosphatase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4C5.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4C5.01","secondary_identifiers":["UniProtKB:O14165"],"synonyms":[{"name":"Spom972h-HDHD1","type":"exact"}],"termid":"PR:O14165"}


id: PBO:0003911
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type m-specific polypeptide mc 2","termid":"PBO:0003911"}


id: FYPO:0004762
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore is abnormal during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiosis","termid":"FYPO:0003549"},{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore","termid":"FYPO:0005209"},{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during meiotic cell cycle","termid":"FYPO:0006529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization to kinetochore during meiosis","synonyms":[{"name":"abnormal protein localisation to kinetochore during meiosis","type":"exact"},{"name":"abnormal protein localization to kinetochore during meiotic nuclear division","type":"exact"},{"name":"abnormal protein localization to meiotic kinetochore","type":"exact"}],"termid":"FYPO:0004762"}


id: MONDO:0017100
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neutropenia-monocytopenia-deafness syndrome is characterized by neutropenia with myeloid marrow hypoplasia, monocytopenia, and congenital deafness. It has been described in three siblings who suffered recurrent bacterial infections.","definition_xrefs":["Orphanet:2690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constitutional neutropenia","termid":"MONDO:0015134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"neutropenia-monocytopenia-deafness syndrome","secondary_identifiers":["GARD:3982","MEDGEN:1383523","UMLS:C4518430"],"termid":"MONDO:0017100","xrefs":{"Monarch":{"xref_id":"0017100"}}}


id: MONDO:0956986
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A connective tissue cancer that is characterized as the combination of solitary fibrous tumors and hemangiopericytomas.","definition_xrefs":["DOID:0080897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue neoplasm","termid":"MONDO:0021581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solitary fibrous tumor/hemangiopericytoma","termid":"MONDO:0956986","xrefs":{"Monarch":{"xref_id":"0956986"}}}


id: MONDO:1010704
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any glycogen storage disease that occurs in sheep due to a mutation in the PYGM gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen storage disease, non-human animal","termid":"MONDO:1011419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen storage disease, PYGM-related, sheep","secondary_identifiers":["OMIA:001139-9940"],"synonyms":[{"name":"glycogen storage disease V, sheep","type":"related"},{"name":"ovine McArdle's disease","type":"exact"}],"termid":"MONDO:1010704","xrefs":{"Monarch":{"xref_id":"1010704"}}}


id: GO:1901501
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xylene stimulus.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to xylene","termid":"GO:1901501"}


id: PBO:0076423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 10","termid":"PBO:0076423"}


id: PBO:0054393
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1789","termid":"PBO:0054393"}


id: GO:0033066
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B and RAD51C, or orthologs thereof.","definition_xrefs":["GOC:mah","PMID:16093548","PMID:17114795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombinase mediator complex","termid":"GO:0033061"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"Rad51B-Rad51C complex","synonyms":[{"name":"BC complex","type":"exact"}],"termid":"GO:0033066"}


id: MONDO:0014292
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukoencephalopathy with mild cerebellar ataxia and white matter edema","secondary_identifiers":["GARD:17565","MEDGEN:1638681","UMLS:C4554120","OMIM:615651","Orphanet:363540","SCTID:768663003","NCIT:C171603"],"synonyms":[{"name":"LKPAT","type":"related"},{"name":"leukoencephalopathy with ataxia","type":"related"}],"termid":"MONDO:0014292","xrefs":{"Monarch":{"xref_id":"0014292"}}}


id: PBO:0064016
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 50","termid":"PBO:0064016"}


id: GO:0140982
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id: MONDO:0024417
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id: PR:O13814
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mdm10 gene.","definition_xrefs":["UniProtKB:O13814","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial distribution and morphology protein 10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.17c","synonyms":[{"name":"Spom972h-mdm10","type":"exact"},{"name":"mitochondrial inheritance component mdm10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13814"}


id: FYPO:0001569
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id: PBO:0083244
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id: GO:0141063
data:
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id: FYPO:0004705
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id: GO:0009593
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id: GO:1904231
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id: MONDO:1012606
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id: GO:0001860
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the C3d product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement receptor activity","termid":"GO:0004875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"complement component C3d receptor activity","termid":"GO:0001860"}


id: PBO:0073249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 2 pseudogene 1","termid":"PBO:0073249"}


id: PBO:0054831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2244","termid":"PBO:0054831"}


id: PBO:0039123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis inducing factor mitochondria associated 1","termid":"PBO:0039123"}


id: GO:0007181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a ligand-bound type II transforming growth factor beta (TGF-beta) receptor dimer with a type I TGF-beta receptor dimer, following ligand binding, to form a heterotetrameric TGF-beta receptor complex.","definition_xrefs":["GOC:jl","Wikipedia:TGF_beta_signaling_pathway"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"transforming growth factor beta receptor signaling pathway","termid":"GO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0023052","GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"transforming growth factor beta receptor complex assembly","synonyms":[{"name":"TGF-beta receptor complex assembly","type":"exact"},{"name":"TGF-beta:type II receptor:type I receptor complex assembly","type":"exact"},{"name":"TGFbeta receptor complex assembly","type":"exact"}],"termid":"GO:0007181"}


id: MONDO:0021121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A vascular proliferation characterized by the presence of prominent endothelial cells and the formation of vascular channels. Hemangioendotheliomas may display borderline or low grade characteristics.","definition_xrefs":["NCIT:C3084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel neoplasm","termid":"MONDO:0021080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangioendothelioma","secondary_identifiers":["MEDGEN:42384","MESH:D006390","ICDO:9130/1","SCTID:403980002","UMLS:C0018915"],"synonyms":[{"name":"angioendothelioma","type":"exact"},{"name":"hemangioendothelioma","type":"exact"}],"termid":"MONDO:0021121","xrefs":{"Monarch":{"xref_id":"0021121"}}}


id: PBO:0028139
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cytosolic_small_ribosomal_subunit_level","termid":"PBO:0028139"}


id: MONDO:0011340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital tracheal stenosis","secondary_identifiers":["UMLS:C0265767","SCTID:9660004","ICD9:748.3","MESH:C566362","icd11.foundation:2095672409","OMIM:603569","GARD:12008","Orphanet:141127","NANDO:1201003","MEDGEN:120556"],"synonyms":[{"name":"tracheobronchial stenosis, congenital","type":"related"}],"termid":"MONDO:0011340","xrefs":{"Monarch":{"xref_id":"0011340"}}}


id: GO:0042075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of nickel into a nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide, found in carbon monoxide dehydrogenase.","definition_xrefs":["RESID:AA0310"],"gene_count":0,"genotype_count":0,"name":"obsolete nickel incorporation into nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide (obsolete GO:0042075)","synonyms":[{"name":"nickel incorporation into nickel-iron-sulphur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulphide","type":"exact"}],"termid":"GO:0042075"}


id: GO:0009655
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The pigment-protein complex primarily associated to PSII in higher plants, green algae and cyanobacteria that directly transfers electrons to the reaction center.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"},{"relation_name":"part_of","term_name":"PSII associated light-harvesting complex II","termid":"GO:0009517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"PSII associated light-harvesting complex II, core complex","synonyms":[{"name":"PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex","type":"narrow"},{"name":"PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex","type":"narrow"},{"name":"PSII associated light-harvesting complex II, core complex, LHCIId subcomplex","type":"narrow"}],"termid":"GO:0009655"}


id: PBO:0040719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL9 like","termid":"PBO:0040719"}


id: MONDO:0011217
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Desmosterolosis is a very rare sterol biosynthesis disorder characterized by multiple congenital anomalies, failure to thrive, and intellectual disability, with elevated levels of desmosterol.","definition_xrefs":["Orphanet:35107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal osteosclerotic dysplasia","termid":"MONDO:0019702"},{"relation_name":"is_a","term_name":"cholesterol biosynthetic process disease","termid":"MONDO:0045017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525","MONDO:0005497"],"is_obsolete":false,"name":"desmosterolosis","secondary_identifiers":["GARD:10283","icd11.foundation:2108931494","SCTID:709490002","MESH:C566555","OMIM:602398","ICD9:272.8","MEDGEN:400801","UMLS:C1865596"],"synonyms":[{"name":"desmosterolosis","type":"exact"}],"termid":"MONDO:0011217","xrefs":{"Monarch":{"xref_id":"0011217"}}}


id: PBO:0067115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 159, pseudogene","termid":"PBO:0067115"}


id: GO:0008500
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete glycine-, glutamate-, thienylcyclohexylpiperidine binding (obsolete GO:0008500)","synonyms":[{"name":"glycine-, glutamate-, thienylcyclohexylpiperidine binding","type":"exact"}],"termid":"GO:0008500"}


id: PR:O13713
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nab2 gene.","definition_xrefs":["UniProtKB:O13713","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear polyadenylated RNA-binding protein nab2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.06c","synonyms":[{"name":"Spom972h-nab2","type":"exact"}],"termid":"PR:O13713"}


id: PR:O13789
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17G6.11c gene.","definition_xrefs":["UniProtKB:O13789","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized beta-glucan synthesis-associated protein C17G6.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.11c","synonyms":[{"name":"Spom972h-SPAC17G6.11c","type":"exact"}],"termid":"PR:O13789"}


id: GO:0099146
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic density membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic density membrane (obsolete GO:0099146)","synonyms":[{"name":"intrinsic to postsynaptic specialization membrane","type":"narrow"}],"termid":"GO:0099146"}


id: GO:0160009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N6-(2E)-butenoyl-L-lysyl-[histone] = (2E)-2-butenoate + L-lysyl-[histone].","definition_xrefs":["PMID:28497810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"},{"relation_name":"is_a","term_name":"protein decrotonylase activity","termid":"GO:0160008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0016787","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"histone decrotonylase activity","termid":"GO:0160009"}


id: PBO:0030508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_topoisomerase_inhibitor","termid":"PBO:0030508"}


id: PBO:0090963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4 kinase plasma membrane scaffold Efr3","termid":"PBO:0090963"}


id: PBO:0040337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP5MC2 pseudogene 3","termid":"PBO:0040337"}


id: PBO:0045902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EEIG family member 2","termid":"PBO:0045902"}


id: GO:1900494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of butyryl-CoA biosynthetic process from acetyl-CoA.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fatty acid biosynthetic process","termid":"GO:0042304"},{"relation_name":"is_a","term_name":"regulation of acyl-CoA biosynthetic process","termid":"GO:0050812"},{"relation_name":"regulates","term_name":"butyryl-CoA biosynthetic process from acetyl-CoA","termid":"GO:0044579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0055086","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"regulation of butyryl-CoA biosynthetic process from acetyl-CoA","synonyms":[{"name":"regulation of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"}],"termid":"GO:1900494"}


id: GO:0021544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon.","definition_xrefs":["PMID:12626695","GOC:dph","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"telencephalon development","termid":"GO:0021537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"subpallium development","termid":"GO:0021544"}


id: MONDO:1011820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal hamartomatous polyposis and ganglioneuromatosis, non-human animal","secondary_identifiers":["OMIA:001515"],"termid":"MONDO:1011820","xrefs":{"Monarch":{"xref_id":"1011820"}}}


id: PBO:0111884
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centaurin ADP ribosylation factor GTPase activating protein family","termid":"PBO:0111884"}


id: PBO:0063756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 21","termid":"PBO:0063756"}


id: PATO:0001964
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curled","termid":"PATO:0000405"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circinate","termid":"PATO:0001964"}


id: PBO:0087457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p); this complex catalyzes nucleotide exchange on Ypt6p","termid":"PBO:0087457"}


id: GO:1905613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of developmental vegetative growth.","definition_xrefs":["PMID:11606552","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"regulates","term_name":"developmental vegetative growth","termid":"GO:0080186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of developmental vegetative growth","termid":"GO:1905613"}


id: PR:Q10178-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q10178-2.","definition_xrefs":["UniProtKB:Q10178","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q10178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP component prp10 isoform B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q10178-2"],"synonyms":[{"name":"Spom972h-SF3B1/iso:B","type":"exact"}],"termid":"PR:Q10178-2"}


id: GO:0005604
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.","definition_xrefs":["PMID:33605520","PMID:22505934","PMID:39223427"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix","termid":"GO:0031012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basement membrane","secondary_identifiers":["GO:0005605","Wikipedia:Basement_membrane","GO:0008003"],"synonyms":[{"name":"basal lamina","type":"related"},{"name":"basement lamina","type":"related"},{"name":"lamina densa","type":"related"}],"termid":"GO:0005604"}


id: PBO:0052434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLC1 antisense RNA 1","termid":"PBO:0052434"}


id: GO:2000414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibronectin-dependent thymocyte migration.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of thymocyte migration","termid":"GO:2000411"},{"relation_name":"is_a","term_name":"regulation of fibronectin-dependent thymocyte migration","termid":"GO:2000413"},{"relation_name":"negatively_regulates","term_name":"fibronectin-dependent thymocyte migration","termid":"GO:0072681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of fibronectin-dependent thymocyte migration","synonyms":[{"name":"negative regulation of fibronectin-dependent immature T cell migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T lymphocyte migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T-cell migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T-lymphocyte migration","type":"related"},{"name":"negative regulation of fibronectin-dependent thymic lymphocyte migration","type":"exact"}],"termid":"GO:2000414"}


id: PBO:0027657
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_cellular_response_to_hydroxyurea","termid":"PBO:0027657"}


id: PBO:0071340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L28 pseudogene 4","termid":"PBO:0071340"}


id: PBO:0054383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1779","termid":"PBO:0054383"}


id: GO:0071767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mycolic acids, beta-hydroxy fatty acids with a long alpha-alkyl side chain.","definition_xrefs":["PMID:15653820","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"mycolic acid metabolic process","synonyms":[{"name":"mycolate metabolic process","type":"exact"},{"name":"mycolic acid metabolism","type":"exact"}],"termid":"GO:0071767"}


id: MOD:00728
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a galactose group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"galactosylated","synonyms":[{"name":"Gal","type":"exact"}],"termid":"MOD:00728"}


