# terms

id: MONDO:0015033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cerebral hemorrhage with amyloidosis, Dutch type (HCHWA-D) is a form of HCHWA, a group of familial central nervous system disorders, characterized by severe cerebral amyloid angiopathy (CAA), hemorrhagic and non-hemorrhagic strokes and dementia.","definition_xrefs":["Orphanet:100006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral amyloid angiopathy, APP-related","termid":"MONDO:0011583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005066"],"is_obsolete":false,"name":"ABeta amyloidosis, dutch type","secondary_identifiers":["ICD9:277.39","MEDGEN:419468","ICD10EXP:E85.4+","SCTID:56453003","UMLS:C2931672","ICD10EXP:I68.0*","GARD:16929"],"synonyms":[{"name":"ABetaE22Q amyloidosis","type":"exact"},{"name":"HCHWA, Dutch type","type":"exact"},{"name":"HCHWA-D","type":"exact"},{"name":"cerebral amyloid angiopathy, APP-related, Dutch variant","type":"exact"},{"name":"hereditary cerebral haemorrhage with amyloidosis, Dutch type","type":"exact"},{"name":"hereditary cerebral hemorrhage with amyloidosis, Dutch type","type":"exact"}],"termid":"MONDO:0015033","xrefs":{"Monarch":{"xref_id":"0015033"}}}


id: GO:0071753
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and in its circulating form complexed with J chain in polymeric forms. An IgM immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["PMID:20176268","GOC:add","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"IgM immunoglobulin complex","termid":"GO:0071753"}


id: SO:1001247
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"orphan","termid":"SO:0000910"},{"relation_name":"is_a","term_name":"CDS_predicted","termid":"SO:1001254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orphan_CDS","synonyms":[{"name":"orphan CDS","type":"exact"}],"termid":"SO:1001247"}


id: PBO:0004018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-amino-4-deoxychorismate lyase (predicted)","termid":"PBO:0004018"}


id: MONDO:0013571
data:
  {"annotated_genes":["SJAG_04823"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87945],"is_not":false,"summary":null,"term":"MONDO:0013571"}]},"cv_name":"mondo","definition":"A congenital disorder resulting from a deficiency in erythrocyte catalase, an enzyme responsible for the breakdown of hydrogen peroxide.","definition_xrefs":["Orphanet:926"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete disorder of peroxisomal alpha-, beta- and omega-oxidation (obsolete MONDO:0017753)","termid":"MONDO:0017753"},{"relation_name":"is_a","term_name":"disorder of defective peroxisome oxidative status","termid":"MONDO:0100306"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04823":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"acatalasia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:363","HGNC:1516","ICD9:277.6","MESH:D020642","UMLS:C0268419","MEDGEN:75679","OMIM:614097","NCIT:C84526","SCTID:124202004","DOID:2582","NANDO:1200774","EFO:0004144"],"synonyms":[{"name":"acatalasemia","type":"exact"},{"name":"acatalasia","type":"exact"},{"name":"catalase deficiency","type":"exact"},{"name":"deficiency of catalase","type":"exact"}],"termid":"MONDO:0013571","terms_by_termid":{"MONDO:0013571":null},"xrefs":{"Monarch":{"xref_id":"0013571"}}}


id: GO:0060233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The negative regulation of cell adhesion process in which an oenocyte splits off of an existing epithelial sheet.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delamination","termid":"GO:0060232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"oenocyte delamination","termid":"GO:0060233"}


id: GO:0047324
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycerone + phosphoenolpyruvate = glycerone phosphate + pyruvate.","definition_xrefs":["RHEA:18381","EC:2.7.1.121"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"phosphoenolpyruvate-glycerone phosphotransferase activity","secondary_identifiers":["MetaCyc:2.7.1.121-RXN","KEGG_REACTION:R01012"],"synonyms":[{"name":"phosphoenolpyruvate:glycerone phosphotransferase activity","type":"related"}],"termid":"GO:0047324"}


id: PBO:0040909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 13","termid":"PBO:0040909"}


id: PR:Q09841
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.07","secondary_identifiers":["UniProtKB:Q09841"],"synonyms":[{"name":"Spom972h-PSMB7","type":"exact"}],"termid":"PR:Q09841"}


id: PBO:0000065
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein N-terminal signal sequence","termid":"PBO:0000065"}


id: PBO:0083910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMN-dependent NAD(P)H:quinone reductase; role in apoptosis-like cell death; may be involved in quinone detoxification; expression elevated at low temperature; sequesters the Cin5p transcription factor in the cytoplasm in complex with the proteasome under reducing conditions","termid":"PBO:0083910"}


id: MONDO:0002220
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tooth disorder","termid":"MONDO:0006999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tooth hard tissue disease","secondary_identifiers":["ICD10CM:K03","MEDGEN:510140","DOID:214","ICD9:521.89","ICD9:521.8","SCTID:46557008","UMLS:C0155926"],"synonyms":[{"name":"disorder of hard tissues of teeth","type":"exact"},{"name":"teeth hard tissue disease","type":"related"},{"name":"teeth hard tissue diseases","type":"related"}],"termid":"MONDO:0002220","xrefs":{"Monarch":{"xref_id":"0002220"}}}


id: PBO:0078936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon CCT) 4-1","termid":"PBO:0078936"}


id: MONDO:0700013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosomal disorder in which chromosome 6 is affected.","definition_xrefs":["MONDO:patterns/chromosome_type"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal anomaly","termid":"MONDO:0020049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 disorder","termid":"MONDO:0700013","xrefs":{"Monarch":{"xref_id":"0700013"}}}


id: GO:0102674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 24-methylenelophenol + a demethylated methyl acceptor = 9xi-episterol + a methylated methyl acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete C4-demethylase activity (obsolete GO:0102674)","termid":"GO:0102674"}


id: PBO:0058402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4773-1","termid":"PBO:0058402"}


id: PBO:0054339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1732","termid":"PBO:0054339"}


id: PBO:0069786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1072, pseudogene","termid":"PBO:0069786"}


id: PBO:0047299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FARP1 antisense RNA 1","termid":"PBO:0047299"}


id: GO:0045792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces cell size.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell size","termid":"GO:0008361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell size","synonyms":[{"name":"down regulation of cell size","type":"exact"},{"name":"down-regulation of cell size","type":"exact"},{"name":"downregulation of cell size","type":"exact"},{"name":"inhibition of cell size","type":"narrow"}],"termid":"GO:0045792"}


id: PBO:0075809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single stranded DNA binding protein 2","termid":"PBO:0075809"}


id: MOD:00422
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a morpholine-2-acetyl group.","definition_xrefs":["PubMed:10446193","Unimod:29#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"},{"relation_name":"is_a","term_name":"morpholine-2-acetylated residue","termid":"MOD:01813"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amino morpholine-2-acetylated residue","synonyms":[{"name":"N-Succinimidyl-2-morpholine acetate","type":"related"},{"name":"N-succinimidylmorpholine-2-acetate alpha-amino derivative","type":"exact"},{"name":"SMA","type":"related"}],"termid":"MOD:00422"}


id: PBO:0085110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear type II J heat shock protein of the E. coli dnaJ family; overexpression stabilizes amino acid permeases; contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly; localizes to the cytosol and plasma membrane, while a GFP fusion protein localizes to the nucleus","termid":"PBO:0085110"}


id: MONDO:1012102
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"idiopathic hepatic fibrosis, non-human animal","termid":"MONDO:1011775"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"idiopathic hepatic fibrosis, dog","secondary_identifiers":["OMIA:000454-9615"],"termid":"MONDO:1012102","xrefs":{"Monarch":{"xref_id":"1012102"}}}


id: PBO:0040605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAGE family member 3","termid":"PBO:0040605"}


id: PBO:0063055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) specific ribonuclease subunit PAN2","termid":"PBO:0063055"}


id: MONDO:1011123
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Persistent Mullerian duct syndrome that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"persistent Mullerian duct syndrome, non-human animal","termid":"MONDO:1010278"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"persistent Mullerian duct syndrome, domestic cat","secondary_identifiers":["OMIA:000791-9685"],"termid":"MONDO:1011123","xrefs":{"Monarch":{"xref_id":"1011123"}}}


id: PBO:0062770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily X member 1 pseudogene","termid":"PBO:0062770"}


id: PBO:0017932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation machinery associated protein Mep33","termid":"PBO:0017932"}


id: MONDO:0002997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the anterior cranial fossa.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterior cranial fossa meningioma","secondary_identifiers":["DOID:4436","MEDGEN:272315","UMLS:C1332301","NCIT:C5286"],"synonyms":[{"name":"anterior cranial fossa meningioma (disease)","type":"exact"},{"name":"anterior fossa meningioma","type":"exact"},{"name":"meningioma (disease) of anterior cranial fossa","type":"exact"},{"name":"meningioma of anterior cranial fossa","type":"exact"},{"name":"meningioma of anterior fossa","type":"exact"},{"name":"meningioma of the anterior cranial fossa","type":"exact"},{"name":"meningioma of the anterior fossa","type":"exact"}],"termid":"MONDO:0002997","xrefs":{"Monarch":{"xref_id":"0002997"}}}


id: SO:0001347
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"1_methylpseudouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"one_methylpseudouridine","secondary_identifiers":["RNAMOD:055"],"synonyms":[{"name":"1-methylpseudouridine","type":"exact"},{"name":"m1Y","type":"exact"},{"name":"one methylpseudouridine","type":"exact"}],"termid":"SO:0001347"}


id: MONDO:0019607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Unspecified juvenile idiopathic arthritis is a rare, pediatric, rheumatologic disease, a subtype of juvenile idiopathic arthritis (JIA) characterized by arthritis of an unknown cause that persists for at least 6 weeks, and does not fulfill the criteria for any of the other JIA subtypes, or fulfills criteria for more than one of the other subtypes.","definition_xrefs":["Orphanet:91140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile idiopathic arthritis","termid":"MONDO:0011429"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unspecified juvenile idiopathic arthritis","secondary_identifiers":["GARD:19155","MEDGEN:1842681","NANDO:2201061","EFO:0009734","UMLS:C5680196"],"synonyms":[{"name":"unspecified JIA","type":"exact"}],"termid":"MONDO:0019607","xrefs":{"Monarch":{"xref_id":"0019607"}}}


id: PBO:0034392
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-proper_tributary_of","termid":"PBO:0034392"}


id: GO:0009989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell recognition that involves the interaction of the cell with the extracellular matrix.","definition_xrefs":["ISBN:0824072820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell recognition","termid":"GO:0008037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-matrix recognition","termid":"GO:0009989"}


id: PBO:0038275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino_acid_insertion_and_mutation","termid":"PBO:0038275"}


id: PBO:0031710
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitophagy","termid":"PBO:0031710"}


id: GO:0099044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial, indirect interaction between a transport vesicle membrane and the membrane of the endoplasmic reticulum. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior fusion.","definition_xrefs":["PMID:27243008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering","termid":"GO:0099022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"vesicle tethering to endoplasmic reticulum","termid":"GO:0099044"}


id: GO:0060544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed necrotic cell death","termid":"GO:0062098"},{"relation_name":"regulates","term_name":"necroptotic process","termid":"GO:0070266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of necroptotic process","secondary_identifiers":["Reactome:R-HSA-5675482"],"synonyms":[{"name":"regulation of necroptosis","type":"narrow"}],"termid":"GO:0060544"}


id: PBO:0078403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor gamma locus","termid":"PBO:0078403"}


id: GO:0048199
data:
  {"annotated_genes":["SJAG_03268","SJAG_04391"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119807,73216],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048205"}]},"cv_name":"biological_process","definition":"The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation.","definition_xrefs":["ISBN:0716731363","PMID:10219233","GOC:mah","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting","termid":"GO:0006903"},{"relation_name":"part_of","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03268":null,"SJAG_04391":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"vesicle targeting, to, from or within Golgi","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi vesicle targeting","type":"exact"},{"name":"dictyosome vesicle targeting","type":"narrow"},{"name":"vesicle targeting, to, from or within dictyosome","type":"narrow"}],"termid":"GO:0048199","terms_by_termid":{"GO:0048205":null}}


id: FYPO:0004840
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which high-affinity import of glucose into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glucose import","termid":"FYPO:0001827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal high-affinity glucose import","synonyms":[{"name":"abnormal high-affinity glucose import during mitotic cell cycle","type":"related"},{"name":"abnormal high-affinity glucose import during vegetative growth","type":"exact"},{"name":"abnormal high-affinity glucose import into cell","type":"exact"},{"name":"abnormal high-affinity glucose uptake","type":"exact"}],"termid":"FYPO:0004840"}


id: FYPO:0005136
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I is normal (i.e. indistinguishable from wild type).","definition_xrefs":["GO:0042138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiotic DNA double-strand break formation","termid":"FYPO:0005136"}


id: GO:0018169
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.","definition_xrefs":["PMID:2570347","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-glutamic acid ligase activity","termid":"GO:0070739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"ribosomal S6-glutamic acid ligase activity","termid":"GO:0018169"}


id: MONDO:0018841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"steroid inherited metabolic disorder","termid":"MONDO:0005523"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"congenital bile acid synthesis defect","secondary_identifiers":["UMLS:C5680095","EFO:0009039","DOID:0050674","Orphanet:485631","OMIMPS:607765","MEDGEN:1826069","GARD:21996"],"synonyms":[{"name":"BASD","type":"exact"},{"name":"CBA","type":"exact"},{"name":"bile acid synthesis defect, congenital","type":"exact"},{"name":"cholestasis with delta(4)-3-oxosteroid-5-beta-reductase deficiency","type":"narrow"}],"termid":"MONDO:0018841","xrefs":{"Monarch":{"xref_id":"0018841"}}}


id: GO:0060286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Cell motility due to the motion of one or more flagella.","definition_xrefs":["GOC:mlg","GOC:dgh","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete flagellar cell motility (obsolete GO:0060286)","synonyms":[{"name":"flagellar cell motility","type":"exact"}],"termid":"GO:0060286"}


id: GO:0004655
data:
  {"annotated_genes":["SJAG_01372"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73588],"is_not":false,"summary":null,"term":"GO:0004655"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 5-aminolevulinate = 2 H2O + H+ + porphobilinogen.","definition_xrefs":["EC:4.2.1.24","RHEA:24064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01372":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"porphobilinogen synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:PORPHOBILSYNTH-RXN","KEGG_REACTION:R00036","Reactome:R-HSA-189439"],"synonyms":[{"name":"5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing)","type":"related"},{"name":"5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing; porphobilinogen-forming)","type":"related"},{"name":"5-levulinic acid dehydratase activity","type":"related"},{"name":"aminolevulinate dehydratase activity","type":"exact"},{"name":"aminolevulinic dehydratase activity","type":"related"},{"name":"delta-aminolevulinate dehydratase activity","type":"related"},{"name":"delta-aminolevulinic acid dehydrase activity","type":"related"},{"name":"delta-aminolevulinic acid dehydratase activity","type":"exact"},{"name":"delta-aminolevulinic dehydratase activity","type":"related"}],"termid":"GO:0004655","terms_by_termid":{"GO:0004655":null}}


id: PBO:0030227
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_tacrolimus_during_salt_stress","termid":"PBO:0030227"}


id: PBO:0079869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urate oxidase (pseudogene)","termid":"PBO:0079869"}


id: PBO:0039477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 19, pseudogene","termid":"PBO:0039477"}


id: SO:0000934
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A miRNA target site is a binding site where the molecule is a micro RNA.","definition_xrefs":["FB:cds"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide_binding_site","termid":"SO:0001655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miRNA_target_site","synonyms":[{"name":"miRNA target site","type":"exact"}],"termid":"SO:0000934"}


id: PBO:0038577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABRAXAS1 pseudogene 2","termid":"PBO:0038577"}


id: GO:0006731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving coenzymes and prosthetic groups.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete coenzyme and prosthetic group metabolic process (obsolete GO:0006731)","synonyms":[{"name":"coenzyme and prosthetic group metabolic process","type":"exact"}],"termid":"GO:0006731"}


id: MONDO:0800310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pregnancy loss, recurrent, susceptibility","termid":"MONDO:0000144"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"infertility disorder","termid":"MONDO:0005047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"pregnancy loss, recurrent, 4","secondary_identifiers":["MEDGEN:481067","UMLS:C3279437"],"synonyms":[{"name":"RPRGL4","type":"exact"}],"termid":"MONDO:0800310","xrefs":{"Monarch":{"xref_id":"0800310"}}}


id: PBO:0076000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saitohin","termid":"PBO:0076000"}


id: PATO:0001019
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mass density","synonyms":[{"name":"density","type":"related"}],"termid":"PATO:0001019"}


id: FYPO:0001300
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of oleoyl-CoA ligase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal long-chain fatty acid-CoA ligase activity","termid":"FYPO:0001305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000002","FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0005447"],"is_obsolete":false,"name":"abnormal oleoyl-CoA ligase activity","synonyms":[{"name":"abnormal oleoyl-CoA synthetase activity","type":"exact"}],"termid":"FYPO:0001300"}


id: MONDO:1011062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute-onset renal failure from deposition of oxalate crystals in renal tubules that occurs in cats due to a mutation in the GRHPR gene.","definition_xrefs":["OMIA:000821-9685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"nephropathy, non-human animal","termid":"MONDO:1011907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary hyperoxaluria, GRHPR-related, domestic cat","synonyms":[{"name":"primary hyperoxaluria type II (Oxalosis II), domestic cat","type":"related"}],"termid":"MONDO:1011062","xrefs":{"Monarch":{"xref_id":"1011062"}}}


id: GO:1903296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glutamate secretion, where glutamate acts as a neurotransmitter.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:16782817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter secretion","termid":"GO:0001956"},{"relation_name":"is_a","term_name":"positive regulation of glutamate secretion","termid":"GO:0014049"},{"relation_name":"is_a","term_name":"positive regulation of synaptic transmission, glutamatergic","termid":"GO:0051968"},{"relation_name":"is_a","term_name":"regulation of glutamate secretion, neurotransmission","termid":"GO:1903294"},{"relation_name":"positively_regulates","term_name":"glutamate secretion, neurotransmission","termid":"GO:0061535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of glutamate secretion, neurotransmission","synonyms":[{"name":"activation of glutamate secretion, neurotransmission","type":"narrow"},{"name":"up regulation of glutamate secretion, neurotransmission","type":"exact"},{"name":"up-regulation of glutamate secretion, neurotransmission","type":"exact"},{"name":"upregulation of glutamate secretion, neurotransmission","type":"exact"}],"termid":"GO:1903296"}


id: PBO:0027834
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_septum_edging_catabolic_process","termid":"PBO:0027834"}


id: PBO:0083549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YER067W","termid":"PBO:0083549"}


id: PBO:0051032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGF like family member 1 pseudogene 2","termid":"PBO:0051032"}


id: PBO:0109602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A3","termid":"PBO:0109602"}


id: GO:1903547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of growth hormone activity.","definition_xrefs":["GOC:mr","GOC:TermGenie","PMID:3068266","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signaling receptor activity","termid":"GO:0010469"},{"relation_name":"is_a","term_name":"regulation of receptor binding","termid":"GO:1900120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of growth hormone activity","synonyms":[{"name":"regulation of GH activity","type":"exact"},{"name":"regulation of pituitary growth hormone activity","type":"narrow"},{"name":"regulation of placental growth hormone activity","type":"narrow"}],"termid":"GO:1903547"}


id: PBO:0058997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MLX pseudogene 1","termid":"PBO:0058997"}


id: GO:0072080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a nephron tubule over time, from its initial formation to the mature structure. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal tubule development","termid":"GO:0061326"},{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephron tubule development","termid":"GO:0072080"}


id: GO:0032033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a light chain of a myosin II complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin light chain binding","termid":"GO:0032027"},{"relation_name":"is_a","term_name":"myosin II binding","termid":"GO:0045159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0008092","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"myosin II light chain binding","termid":"GO:0032033"}


id: PR:O13339-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A telomerase reverse transcriptase (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:O13339-2.","definition_xrefs":["UniProtKB:O13339","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomerase reverse transcriptase (Schizosaccharomyces pombe 972h-)","termid":"PR:O13339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase reverse transcriptase isoform 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:O13339-2"],"synonyms":[{"name":"Spom972h-TERT/iso:2","type":"exact"}],"termid":"PR:O13339-2"}


id: GO:0044570
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A bacterial cell envelope-associated multiprotein system, which binds and degrades starch.","definition_xrefs":["GOC:mengo_curators","GOC:tt","PMID:19553672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"cell outer membrane","termid":"GO:0009279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"starch utilization system complex","synonyms":[{"name":"Sus complex","type":"exact"}],"termid":"GO:0044570"}


id: MONDO:0012117
data:
  {"annotated_genes":["SJAG_00334"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88420],"is_not":false,"summary":null,"term":"MONDO:0012117"},{"annotations":[89259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009890"}]},"cv_name":"mondo","definition":"A form of congenital disorders of N-linked glycosylation characterized by progressive microcephaly, hypotonia, developmental delay, drug-resistant infantile epilepsy, and hepatomegaly. Additional features that may be observed include failure to thrive, pericardial effusion, renal cysts, skeletal dysplasia, facial dysmorphism (frontal bossing, hypertelorism, depressed nasal bridge, low-seated ears, large mouth) and hydrops fetalis. The disease is caused by loss-of-function mutations in the gene ALG9 (11q23).","definition_xrefs":["Orphanet:79328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"ALG9-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:9839","OMIM:608776","SCTID:720978005","MESH:C535750","UMLS:C2931006","DOID:0080564","MEDGEN:443955"],"synonyms":[{"name":"ALG9-CDG","type":"exact"},{"name":"ALG9-CDG (CDG-IL)","type":"related"},{"name":"ALG9-congenital disorder of glycosylation","type":"exact"},{"name":"CDG 1L","type":"related"},{"name":"CDG IL","type":"related"},{"name":"CDG syndrome type IL","type":"exact"},{"name":"CDG-IL","type":"exact"},{"name":"CDG1L","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type 1L","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type IL","type":"related"},{"name":"congenital disorder of glycosylation type 1L","type":"exact"},{"name":"congenital disorder of glycosylation type IL","type":"related"},{"name":"congenital disorder of glycosylation, type IL","type":"related"},{"name":"mannosyltransferase 7-9 deficiency","type":"exact"}],"termid":"MONDO:0012117","terms_by_termid":{"MONDO:0009890":null,"MONDO:0012117":null},"xrefs":{"Monarch":{"xref_id":"0012117"}}}


id: GO:1903058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of melanosome organization.","definition_xrefs":["GOC:TermGenie","GOC:rl","PMID:24769727","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of melanosome organization","termid":"GO:1903056"},{"relation_name":"positively_regulates","term_name":"melanosome organization","termid":"GO:0032438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of melanosome organization","synonyms":[{"name":"activation of melanosome organisation","type":"narrow"},{"name":"activation of melanosome organization","type":"narrow"},{"name":"activation of melanosome organization and biogenesis","type":"related"},{"name":"positive regulation of melanosome organisation","type":"exact"},{"name":"positive regulation of melanosome organization and biogenesis","type":"related"},{"name":"up regulation of melanosome organisation","type":"exact"},{"name":"up regulation of melanosome organization","type":"exact"},{"name":"up regulation of melanosome organization and biogenesis","type":"related"},{"name":"up-regulation of melanosome organisation","type":"exact"},{"name":"up-regulation of melanosome organization","type":"exact"},{"name":"up-regulation of melanosome organization and biogenesis","type":"related"},{"name":"upregulation of melanosome organisation","type":"exact"},{"name":"upregulation of melanosome organization","type":"exact"},{"name":"upregulation of melanosome organization and biogenesis","type":"related"}],"termid":"GO:1903058"}


id: GO:0099094
data:
  {"annotated_genes":["SJAG_02322","SJAG_03895"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81776,74988],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"}]},"cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an inorganic cation by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation channel activity","termid":"GO:0005261"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic ion channel activity","termid":"GO:0015276"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02322":null,"SJAG_03895":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ligand-gated monoatomic cation channel activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"ligand-gated cation channel activity","type":"broad"}],"termid":"GO:0099094","terms_by_termid":{"GO:0005227":null}}


id: PBO:0029336
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_phosphorylation","termid":"PBO:0029336"}


id: PBO:0078702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 4-1","termid":"PBO:0078702"}


id: PR:A6X974
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8E11.08c gene.","definition_xrefs":["UniProtKB:A6X974","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C8E11.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8E11.08c","synonyms":[{"name":"Spom972h-SPAC8E11.08c","type":"exact"}],"termid":"PR:A6X974"}


id: MONDO:0000338
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"smallpox","termid":"MONDO:0004651"},{"relation_name":"is_a","term_name":"exanthem","termid":"MONDO:0006547"},{"relation_name":"is_a","term_name":"skin disorder caused by infection","termid":"MONDO:0024294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"variola major infectious disease","secondary_identifiers":["SCTID:47452006","UMLS:C1812609","DOID:0050508","MEDGEN:740750","ICD9:050.0"],"synonyms":[{"name":"variola major","type":"broad"}],"termid":"MONDO:0000338","xrefs":{"Monarch":{"xref_id":"0000338"}}}


id: MONDO:0012630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An Alzheimer's disease that is characterized by an associated with variation in the region 1q21.","definition_xrefs":["PMID:17564960","DOID:0110046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset autosomal dominant Alzheimer disease","termid":"MONDO:0015140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0000426","MONDO:0005559"],"is_obsolete":false,"name":"Alzheimer disease 13","secondary_identifiers":["MESH:C567000","MEDGEN:370835","GARD:16517","UMLS:C1970147","OMIM:611152"],"synonyms":[{"name":"AD13","type":"exact"},{"name":"Alzheimer disease 13","type":"exact"},{"name":"Alzheimer disease-13","type":"exact"},{"name":"Alzheimer's disease 13","type":"exact"},{"name":"Alzheimer's disease type 13","type":"exact"}],"termid":"MONDO:0012630","xrefs":{"Monarch":{"xref_id":"0012630"}}}


id: PBO:0068852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 90, pseudogene","termid":"PBO:0068852"}


id: MONDO:0012935
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukemia, chronic lymphocytic, susceptibility to, 4","secondary_identifiers":["UMLS:C2675515","MEDGEN:382620","OMIM:612558"],"synonyms":[{"name":"Clls4","type":"related"},{"name":"leukemia, chronic lymphocytic susceptibility to, 4","type":"exact"},{"name":"leukemia, chronic lymphocytic, susceptibility to, 4","type":"exact"},{"name":"leukemia, chronic lymphocytic, susceptibility to, type 4","type":"exact"}],"termid":"MONDO:0012935","xrefs":{"Monarch":{"xref_id":"0012935"}}}


id: MONDO:0015348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leukoencephalopathy with bilateral anterior temporal lobe cysts is a nonprogressive neurological disorder marked by intellectual deficit, spasticity and motor retardation associated with characteristic MRI findings of anterior bilateral temporal lobe cysts and multilobar leukoencephalopathy. So far, around 30 cases have been reported in the literature. Onset occurs in the first few months of life. Sensorineural deafness and microcephaly have also been reported. The etiology is unknown but an autosomal recessive mode of inheritance has been suggested.","definition_xrefs":["Orphanet:139444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukoencephalopathy with bilateral anterior temporal lobe cysts","secondary_identifiers":["MEDGEN:930413","UMLS:C4304744","GARD:19917","icd11.foundation:138159250"],"termid":"MONDO:0015348","xrefs":{"Monarch":{"xref_id":"0015348"}}}


id: PBO:0052111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily B member 1","termid":"PBO:0052111"}


id: MONDO:0033012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"erythrokeratodermia variabilis","termid":"MONDO:0017851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"erythrokeratodermia variabilis et progressiva 2","secondary_identifiers":["DOID:0080248","UMLS:C4479618","MEDGEN:1379712","GARD:18588","OMIM:617524"],"synonyms":[{"name":"EKVP2","type":"related"},{"name":"erythrokeratodermia variabilis ET progressiva 2","type":"related"}],"termid":"MONDO:0033012","xrefs":{"Monarch":{"xref_id":"0033012"}}}


id: PBO:0076455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transgelin 2 pseudogene 1","termid":"PBO:0076455"}


id: GO:0009000
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-selenocysteine + reduced acceptor = hydrogen selenide + L-alanine + acceptor.","definition_xrefs":["EC:4.4.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"selenocysteine lyase activity","secondary_identifiers":["RHEA:11632","MetaCyc:SELENOCYSTEINE-LYASE-RXN","Reactome:R-HSA-2408524"],"synonyms":[{"name":"L-selenocysteine selenide-lyase (L-alanine-forming)","type":"related"},{"name":"selenocysteine beta-lyase activity","type":"related"},{"name":"selenocysteine reductase activity","type":"related"}],"termid":"GO:0009000"}


id: GO:0045647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of erythrocyte differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myeloid cell differentiation","termid":"GO:0045638"},{"relation_name":"is_a","term_name":"regulation of erythrocyte differentiation","termid":"GO:0045646"},{"relation_name":"negatively_regulates","term_name":"erythrocyte differentiation","termid":"GO:0030218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of erythrocyte differentiation","synonyms":[{"name":"down regulation of erythrocyte differentiation","type":"exact"},{"name":"down-regulation of erythrocyte differentiation","type":"exact"},{"name":"downregulation of erythrocyte differentiation","type":"exact"},{"name":"inhibition of erythrocyte differentiation","type":"narrow"},{"name":"negative regulation of RBC differentiation","type":"exact"},{"name":"negative regulation of red blood cell differentiation","type":"exact"}],"termid":"GO:0045647"}


id: GO:0070100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of a chemokine-mediated signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of chemokine-mediated signaling pathway","termid":"GO:0070099"},{"relation_name":"negatively_regulates","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of chemokine-mediated signaling pathway","synonyms":[{"name":"negative regulation of chemokine-mediated signalling pathway","type":"exact"}],"termid":"GO:0070100"}


id: FYPO:0003323
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which succinate dehydrogenase (ubiquinone) activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0003322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"abolished succinate dehydrogenase (ubiquinone) activity","synonyms":[{"name":"succinate dehydrogenase (ubiquinone) activity abolished","type":"exact"}],"termid":"FYPO:0003323"}


id: MONDO:0001236
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm involving the appendix.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cecal neoplasm","termid":"MONDO:0005694"},{"relation_name":"is_a","term_name":"disorder of appendix","termid":"MONDO:0056798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"appendiceal neoplasm","secondary_identifiers":["MESH:D001063","NCIT:C4434","SCTID:126846004","UMLS:C0003614","MEDGEN:1629","DOID:11240","EFO:0003880"],"synonyms":[{"name":"appendix neoplasm","type":"exact"},{"name":"appendix tumor","type":"exact"},{"name":"appendix tumour","type":"exact"},{"name":"neoplasm of appendix","type":"exact"},{"name":"neoplasm of the appendix","type":"exact"},{"name":"neoplasm of vermiform appendix","type":"exact"},{"name":"tumor of appendix","type":"exact"},{"name":"tumor of the appendix","type":"exact"},{"name":"tumor of vermiform appendix","type":"exact"},{"name":"tumour of appendix","type":"exact"},{"name":"tumour of the appendix","type":"exact"},{"name":"tumour of vermiform appendix","type":"exact"},{"name":"vermiform appendix neoplasm","type":"exact"},{"name":"vermiform appendix neoplasm (disease)","type":"exact"},{"name":"vermiform appendix tumor","type":"exact"},{"name":"vermiform appendix tumour","type":"exact"}],"termid":"MONDO:0001236","xrefs":{"Monarch":{"xref_id":"0001236"}}}


id: PBO:0077607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 13","termid":"PBO:0077607"}


id: PATO:0001903
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A directional quality inhering in a bearer by virtue of the bearer's having two directions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direction","termid":"PATO:0000039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bi-directional","termid":"PATO:0001903"}


id: GO:0015882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which L-ascorbic acid is transported across a lipid bilayer, from one side of a membrane to the other. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide transmembrane transport","termid":"GO:0015749"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-ascorbic acid transmembrane transport","synonyms":[{"name":"L-ascorbate transport","type":"exact"},{"name":"L-ascorbic acid transport","type":"related"},{"name":"vitamin C transport","type":"exact"}],"termid":"GO:0015882"}


id: PBO:0042389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD300 molecule like family member b","termid":"PBO:0042389"}


id: MONDO:0000792
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete zebrafish allergy (obsolete MONDO:0000792)","secondary_identifiers":["DOID:0060517"],"termid":"MONDO:0000792","xrefs":{"Monarch":{"xref_id":"0000792"}}}


id: PBO:0117024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3146","termid":"PBO:0117024"}


id: GO:0098822
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-cysteine to form peptidyl-L-cysteine persulfide.","definition_xrefs":["PMID:11592406"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine modification to L-cysteine persulfide (obsolete GO:0098822)","termid":"GO:0098822"}


id: PBO:0079939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USH1 protein network component harmonin","termid":"PBO:0079939"}


id: PBO:0056892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"midline 2","termid":"PBO:0056892"}


id: MONDO:0016889
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 7p deletion is a chromosome abnormality that occurs when there is a missing copy of the genetic material located on the short arm (p) of chromosome 7. The severity of the condition and the signs and symptoms depend on the size and location of the deletion and which genes are involved. Features that often occur in people with chromosome 7p deletion include developmental delay, intellectual disability, behavioral problems, and distinctive facial features. Most cases are not inherited, but people can pass the deletion on to their children. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0001346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 7","termid":"MONDO:0016872"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of the short arm of chromosome 7","secondary_identifiers":["icd11.foundation:1523142467","UMLS:C5679668","GARD:1346","Orphanet:261911","MEDGEN:1826021"],"synonyms":[{"name":"7p deletion","type":"related"},{"name":"7p monosomy","type":"related"},{"name":"chromosome 7p deletion","type":"related"},{"name":"deletion 7p","type":"related"},{"name":"monosomy 7p","type":"related"},{"name":"partial deletion of chromosome 7p","type":"exact"},{"name":"partial deletion of the short arm of chromosome type 7","type":"exact"},{"name":"partial monosomy 7p","type":"related"},{"name":"partial monosomy of chromosome 7p","type":"exact"},{"name":"partial monosomy of the short arm of chromosome 7","type":"exact"}],"termid":"MONDO:0016889","xrefs":{"Monarch":{"xref_id":"0016889"}}}


id: PBO:0081961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zona pellucida binding protein","termid":"PBO:0081961"}


id: GO:1904287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein-pyridoxal-5-phosphate linkage.","definition_xrefs":["GOC:TermGenie","PMID:25957689","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein modification process","termid":"GO:0031401"},{"relation_name":"is_a","term_name":"regulation of protein-pyridoxal-5-phosphate linkage","termid":"GO:1904285"},{"relation_name":"positively_regulates","term_name":"protein-pyridoxal-5-phosphate linkage","termid":"GO:0018352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein-pyridoxal-5-phosphate linkage","synonyms":[{"name":"activation of protein-pyridoxal-5-phosphate linkage","type":"narrow"},{"name":"stimulation of protein-pyridoxal-5-phosphate linkage","type":"exact"},{"name":"up regulation of protein-pyridoxal-5-phosphate linkage","type":"exact"},{"name":"up-regulation of protein-pyridoxal-5-phosphate linkage","type":"exact"},{"name":"upregulation of protein-pyridoxal-5-phosphate linkage","type":"exact"}],"termid":"GO:1904287"}


id: GO:0008458
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-carnitine + octanoyl-CoA = CoA + O-octanoyl-(R)-carnitine.","definition_xrefs":["RHEA:17177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine O-acyltransferase activity","termid":"GO:0016406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"carnitine O-octanoyltransferase activity","secondary_identifiers":["EC:2.3.1.137","MetaCyc:CARNITINE-O-OCTANOYLTRANSFERASE-RXN","Reactome:R-HSA-390281","KEGG_REACTION:R03779"],"synonyms":[{"name":"carnitine medium-chain acyltransferase activity","type":"related"},{"name":"easily solubilized mitochondrial carnitine palmitoyltransferase","type":"narrow"},{"name":"medium-chain/long-chain carnitine acyltransferase activity","type":"related"},{"name":"octanoyl-CoA:L-carnitine O-octanoyltransferase activity","type":"related"},{"name":"overt mitochondrial carnitine palmitoyltransferase","type":"narrow"}],"termid":"GO:0008458"}


id: GO:0001665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CMP-N-acetylneuraminate + glycano-(1->3)-(N-acetyl-alpha-D-galactosaminyl)-glycoprotein = CMP + glycano-[(2->6)-alpha-N-acetylneuraminyl]-(N-acetyl-D-galactosaminyl)-glycoprotein.","definition_xrefs":["EC:2.4.3.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sialyltransferase activity","termid":"GO:0008373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9846305","MetaCyc:2.4.99.3-RXN","RHEA:11136","Reactome:R-HSA-9603991","Reactome:R-HSA-4084980"],"synonyms":[{"name":"GalNAc alpha-2,6-sialyltransferase I activity","type":"related"}],"termid":"GO:0001665"}


id: PR:Q9USG9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tyrosyl-DNA phosphodiesterase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12415:SF0","OMA:SCHPO04352","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosyl-DNA phosphodiesterase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP31B10.05","secondary_identifiers":["UniProtKB:Q9USG9"],"synonyms":[{"name":"Spom972h-TDP1","type":"exact"},{"name":"Tyr-DNA phosphodiesterase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USG9"}


id: PBO:0041349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 85","termid":"PBO:0041349"}


id: PBO:0048675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLCCI1 divergent transcript","termid":"PBO:0048675"}


id: MONDO:0030768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"junctional epidermolysis bullosa","termid":"MONDO:0017612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa, junctional 5A, intermediate","secondary_identifiers":["UMLS:C5676956","OMIM:619816","MEDGEN:1811851"],"synonyms":[{"name":"JEB5A","type":"exact"},{"name":"epidermolysis bullosa, junctional 5A, generalised intermediate","type":"exact"},{"name":"epidermolysis bullosa, junctional 5A, generalized intermediate","type":"exact"},{"name":"epidermolysis bullosa, junctional 5A, intermediate","type":"exact"},{"name":"epidermolysis bullosa, junctional 5A, non-herlitz IIA","type":"exact"}],"termid":"MONDO:0030768","xrefs":{"Monarch":{"xref_id":"0030768"}}}


id: MONDO:0007468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete DNA, satellite, alpha type (obsolete MONDO:0007468)","secondary_identifiers":["OMIM:126410"],"synonyms":[{"name":"DNA, satellite, alpha type","type":"exact"}],"termid":"MONDO:0007468","xrefs":{"Monarch":{"xref_id":"0007468"}}}


id: PR:O13809
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17H9.12c gene.","definition_xrefs":["UniProtKB:O13809","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized FAD-binding protein C17H9.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.12c","synonyms":[{"name":"Spom972h-SPAC17H9.12c","type":"exact"}],"termid":"PR:O13809"}


id: PR:Q6LA53
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein AAR2 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01434","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A1 cistron-splicing factor aar2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H5.04","secondary_identifiers":["UniProtKB:Q6LA53"],"synonyms":[{"name":"Spom972h-AAR2","type":"exact"}],"termid":"PR:Q6LA53"}


id: PBO:0065393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSMA1 pseudogene 1","termid":"PBO:0065393"}


id: PBO:0090846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-N ortholog Mis15","termid":"PBO:0090846"}


id: GO:0005966
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. An enzyme complex that catalyzes the hydrolysis of bonds in a cyclic nucleotide.","definition_xrefs":["EC:3.1.4.-"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclic-nucleotide phosphodiesterase complex (obsolete GO:0005966)","synonyms":[{"name":"photoreceptor cyclic-nucleotide phosphodiesterase complex","type":"narrow"}],"termid":"GO:0005966"}


id: GO:0008595
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of the anterior/posterior axis of the embryo by the products of genes expressed maternally and genes expressed in the zygote.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic axis specification","termid":"GO:0000578"},{"relation_name":"is_a","term_name":"anterior/posterior axis specification","termid":"GO:0009948"},{"relation_name":"part_of","term_name":"tripartite regional subdivision","termid":"GO:0007351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior/posterior axis specification, embryo","synonyms":[{"name":"anterior/posterior axis determination, embryo","type":"related"}],"termid":"GO:0008595"}


id: MONDO:0958342
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare developmental defect during embryogenesis characterized by congenital absence of the optic nerve head, optic nerve fibers, retinal ganglion cells, and retinal blood vessels in a malformed eye. It often occurs unilaterally with otherwise normal brain development. In bilateral cases it is accompanied by other central nervous system malformations.","definition_xrefs":["Orphanet:637064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optic nerve disorder","termid":"MONDO:0002135"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated optic nerve aplasia","secondary_identifiers":["MEDGEN:1836872","UMLS:C5816782"],"termid":"MONDO:0958342","xrefs":{"Monarch":{"xref_id":"0958342"}}}


id: PBO:0069309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 565, pseudogene","termid":"PBO:0069309"}


id: PBO:0049753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxycarboxylic acid receptor 3","termid":"PBO:0049753"}


id: MONDO:0009286
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluteal muscles, absence of","secondary_identifiers":["OMIM:231970","MEDGEN:383902","UMLS:C1856398","MESH:C535561"],"synonyms":[{"name":"absence of gluteal muscle","type":"related"},{"name":"congenital absence of gluteal muscles","type":"related"},{"name":"gluteal muscle, absence of","type":"related"},{"name":"gluteal muscles, absence of","type":"exact"}],"termid":"MONDO:0009286","xrefs":{"Monarch":{"xref_id":"0009286"}}}


id: GO:0044818
data:
  {"annotated_genes":["SJAG_03160","SJAG_02266","SJAG_01146","SJAG_05373","SJAG_02771","SJAG_01076","SJAG_03942","SJAG_01010","SJAG_01873","SJAG_04287","SJAG_02098","SJAG_00364","SJAG_02563","SJAG_02074","SJAG_04671","SJAG_03026","SJAG_03927","SJAG_03695","SJAG_01680","SJAG_01044","SJAG_01429","SJAG_00640","SJAG_02576","SJAG_01205","SJAG_01605"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111361,73072,108650,80874,119170,114091,118864,81464,74283,76854,101203,95974,101369,93440,118120,102559,119343],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[119083,68050,77206,61767,62591,61060,81337,91129,101371,108651,103073,93441,111362,113784,74285],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"}]},"cv_name":"biological_process","definition":"A cell cycle checkpoint that detects and negatively regulates progression from G2 to M phase as part of a mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle checkpoint signaling","termid":"GO:0007093"},{"relation_name":"is_a","term_name":"negative regulation of G2/M transition of mitotic cell cycle","termid":"GO:0010972"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00640":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01429":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_01873":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04287":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0044772","GO:0023052","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic G2/M transition checkpoint","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0044818","terms_by_termid":{"GO:0007095":null,"GO:0033314":null}}


id: PBO:0028482
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_mononucleate_cell_with_elongated_germ_tube","termid":"PBO:0028482"}


id: PBO:0080381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting 13 homolog A","termid":"PBO:0080381"}


id: GO:0019686
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways by which a purine nucleoside is synthesized from another purine nucleoside.","definition_xrefs":["ISBN:0306444747","ISBN:0471394831","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing small molecule interconversion","termid":"GO:0015949"},{"relation_name":"is_a","term_name":"purine nucleoside metabolic process","termid":"GO:0042278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine nucleoside interconversion","termid":"GO:0019686"}


id: PBO:0052865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-8","termid":"PBO:0052865"}


id: MONDO:0020454
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital complete agenesis of pericardium is a rare, mostly asymptomatic, congenital heart malformation characterized by the complete absence of the entire pericardium, or by the absence of either the right (uncommon) or left pericardium. It is occasionally associated with chest pain (common), dyspnea, dizziness, bradycardia and syncope, while exertional manifestations are rare. The disease is usually incidentally diagnosed during surgery or at autopsy.","definition_xrefs":["Orphanet:99129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital pericardium anomaly","termid":"MONDO:0017300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital complete agenesis of pericardium","secondary_identifiers":["GARD:19666"],"termid":"MONDO:0020454","xrefs":{"Monarch":{"xref_id":"0020454"}}}


id: MONDO:0971007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neuroocular syndrome","termid":"MONDO:0859193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neuroocular syndrome 1","secondary_identifiers":["MEDGEN:1863661","UMLS:C5925133","Orphanet:659904","OMIM:619539"],"termid":"MONDO:0971007","xrefs":{"Monarch":{"xref_id":"0971007"}}}


id: GO:0033943
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in (1->3)-beta-D-galactopyranans.","definition_xrefs":["EC:3.2.1.145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-galactosidase activity","termid":"GO:0004565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"galactan 1,3-beta-galactosidase activity","secondary_identifiers":["MetaCyc:3.2.1.145-RXN"],"synonyms":[{"name":"galactan (1,3)-beta-D-galactosidase activity","type":"related"},{"name":"galactan (1->3)-beta-D-galactosidase activity","type":"related"}],"termid":"GO:0033943"}


id: PBO:0000916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geranyltranstransferase Fps1","termid":"PBO:0000916"}


id: MONDO:0008879
data:
  {"annotated_genes":["SJAG_02024"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87552],"is_not":false,"summary":null,"term":"MONDO:0008879"}]},"cv_name":"mondo","definition":"Bowen-Conradi syndrome (BCS) is a lethal autosomal recessive ribosomal biogenesis disorder characterized by severe prenatal and postnatal growth retardation, microcephaly, a distinctive facial appearance, extreme psychomotor delay, hip and knee contractures and rockerbottom feet.","definition_xrefs":["Orphanet:1270"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Bowen-Conradi syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:869","MEDGEN:349160","MESH:C537081","GARD:5950","icd11.foundation:1713786719","ICD9:759.89","SCTID:711153001","OMIM:211180","DOID:0050684","UMLS:C1859405"],"synonyms":[{"name":"BWCNS","type":"exact"},{"name":"Bowen Hutterite Syndrome","type":"exact"},{"name":"Bowen Hutterite syndrome","type":"exact"},{"name":"Bowen Hutterite syndrome (formerly)","type":"exact"},{"name":"Bowen Hutterite syndrome, formerly","type":"exact"},{"name":"Bowen syndrome, Hutterite type","type":"exact"},{"name":"Bowen-Conradi Hutterite syndrome","type":"exact"},{"name":"Bowen-Conradi syndrome","type":"exact"}],"termid":"MONDO:0008879","terms_by_termid":{"MONDO:0008879":null},"xrefs":{"Monarch":{"xref_id":"0008879"}}}


id: MOD:00993
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenyl ester","synonyms":[{"name":"OPh","type":"exact"}],"termid":"MOD:00993"}


id: MONDO:0017329
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial vesicoureteral reflux is a rare, non-syndromic urogenital tract malformation characterized by the familial occurrence of retrograde flow of urine from the bladder into the ureter and sometimes the kidneys. Patients may be asymptomatic or may present with recurrent, sometimes febrile, urinary tract infections that, in case of acute pyelonephritis, may lead to serious complications (renal scarring, hypertension, renal failure). Spontaneous resolution of the disorder is possible.","definition_xrefs":["Orphanet:289365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"vesicoureteral reflux","termid":"MONDO:0006007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial vesicoureteral reflux","secondary_identifiers":["MEDGEN:1637583","GARD:17323","OMIMPS:193000","SCTID:763716008","UMLS:C4706552"],"synonyms":[{"name":"familial VUR","type":"exact"},{"name":"hereditary vesicoureteral reflux (disease)","type":"exact"}],"termid":"MONDO:0017329","xrefs":{"Monarch":{"xref_id":"0017329"}}}


id: PBO:0042983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 9","termid":"PBO:0042983"}


id: MONDO:0000259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dengue disease","termid":"MONDO:0005502"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asymptomatic dengue","secondary_identifiers":["DOID:0050143"],"termid":"MONDO:0000259","xrefs":{"Monarch":{"xref_id":"0000259"}}}


id: PR:O13946
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transmembrane emp24 domain-containing protein 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum vesicle protein 25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.03c","secondary_identifiers":["UniProtKB:O13946"],"synonyms":[{"name":"SPAC23H4.03c","type":"related"},{"name":"Spom972h-TMED10","type":"exact"}],"termid":"PR:O13946"}


id: PBO:0046724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ecotropic viral integration site 2B","termid":"PBO:0046724"}


id: PBO:0028899
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_kinetochore_during_vegetative_growth","termid":"PBO:0028899"}


id: GO:0004982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an N-formyl peptide to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"N-formyl peptide receptor activity","synonyms":[{"name":"Fmet-leu-phe receptor","type":"exact"}],"termid":"GO:0004982"}


id: PBO:0054189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1564","termid":"PBO:0054189"}


id: MONDO:0015599
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atopic keratoconjunctivitis is a rare and chronic allergic disease of the cornea and conjunctiva occurring in all age groups characterized by severe itching and burning sensation, conjunctival injection, photophobia and edema with serious cases leading to ulceration of the cornea which can result in blindness. It is often associated with atopic dermatitis.","definition_xrefs":["Orphanet:163934"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"atopic keratoconjunctivitis","secondary_identifiers":["GARD:20053","ICD9:370.49","MEDGEN:698110","ICD10CM:H16.2","UMLS:C1274788","icd11.foundation:1941631830","MedDRA:10069664","SCTID:403434009"],"termid":"MONDO:0015599","xrefs":{"Monarch":{"xref_id":"0015599"}}}


id: GO:0015373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monoatomic anion(out) + Na+(out) = monoatomic anion(in) + Na+(in).","definition_xrefs":["TC:2.A.21.5.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion:monoatomic cation symporter activity","termid":"GO:0015296"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"monoatomic anion:sodium symporter activity","synonyms":[{"name":"anion:sodium symporter activity","type":"broad"},{"name":"monovalent anion:sodium symporter activity","type":"related"}],"termid":"GO:0015373"}


id: PBO:0087398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stress inducible cytoplasmic thioredoxin peroxidase; cooperates with Tsa1p in the removal of reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; deletion enhances the mutator phenotype of tsa1 mutants; protein abundance increases in response to DNA replication stress; TSA2 has a paralog, TSA1, that arose from the whole genome duplication","termid":"PBO:0087398"}


id: GO:0033577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in the endoplasmic reticulum.","definition_xrefs":["GOC:pr","PMID:12042244","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete protein glycosylation in endoplasmic reticulum (obsolete GO:0033577)","synonyms":[{"name":"core glycosylation","type":"related"},{"name":"protein amino acid glycosylation in ER","type":"exact"},{"name":"protein amino acid glycosylation in endoplasmic reticulum","type":"exact"}],"termid":"GO:0033577"}


id: PBO:0081412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 264","termid":"PBO:0081412"}


id: GO:0007496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior midgut over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"midgut development","termid":"GO:0007494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior midgut development","termid":"GO:0007496"}


id: PBO:0054465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1864","termid":"PBO:0054465"}


id: GO:0046279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 3,4-dihydroxybenzoate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"3,4-dihydroxybenzoate metabolic process","termid":"GO:0046278"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"3,4-dihydroxybenzoate biosynthetic process","synonyms":[{"name":"protocatechuate anabolism","type":"exact"},{"name":"protocatechuate biosynthesis","type":"exact"},{"name":"protocatechuate biosynthetic process","type":"exact"},{"name":"protocatechuate formation","type":"exact"},{"name":"protocatechuate synthesis","type":"exact"}],"termid":"GO:0046279"}


id: MONDO:0013453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Leber congenital amaurosis in which the cause of the disease is a mutation in the CRB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Leber congenital amaurosis","termid":"MONDO:0018998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"Leber congenital amaurosis 8","secondary_identifiers":["UMLS:C3151202","DOID:0110079","GARD:10881","MEDGEN:462552","OMIM:613835","ICD10CM:H35.5"],"synonyms":[{"name":"CRB1 Leber congenital amaurosis","type":"exact"},{"name":"LCA8","type":"exact"},{"name":"Leber congenital amaurosis 8","type":"exact"},{"name":"Leber congenital amaurosis caused by mutation in CRB1","type":"exact"},{"name":"Leber congenital amaurosis type 8","type":"exact"}],"termid":"MONDO:0013453","xrefs":{"Monarch":{"xref_id":"0013453"}}}


id: GO:0098501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing one or more phosphate groups from a polynucleotide.","definition_xrefs":["GOC:DOS"],"gene_count":0,"genotype_count":0,"name":"obsolete polynucleotide dephosphorylation (obsolete GO:0098501)","termid":"GO:0098501"}


id: GO:0102846
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:3-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:3-2-16:1-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102846)","termid":"GO:0102846"}


id: GO:1904947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which folic acid is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["GOC:rph","GO_REF:0000075","GOC:BHF","PMID:15140890","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folate transmembrane transport","termid":"GO:0098838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"folate import into mitochondrion","synonyms":[{"name":"folic acid import into mitochondrion","type":"related"}],"termid":"GO:1904947"}


id: MONDO:0017008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome X disorder","termid":"MONDO:0700027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome X","secondary_identifiers":["Orphanet:263768","UMLS:C5679687","MEDGEN:1825971","GARD:20916"],"synonyms":[{"name":"partial duplication of chromosome type X","type":"exact"},{"name":"partial trisomy of chromosome X","type":"exact"}],"termid":"MONDO:0017008","xrefs":{"Monarch":{"xref_id":"0017008"}}}


id: PBO:0036512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb1 (predicted)","termid":"PBO:0036512"}


id: GO:0070278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretion by cell","termid":"GO:0032940"},{"relation_name":"part_of","term_name":"extracellular matrix organization","termid":"GO:0030198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"extracellular matrix constituent secretion","synonyms":[{"name":"ECM constituent secretion","type":"exact"},{"name":"ECM secretion","type":"exact"}],"termid":"GO:0070278"}


id: GO:0032454
data:
  {"annotated_genes":["SJAG_03997","SJAG_03041","SJAG_02401","SJAG_03664"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72377,119823],"is_not":false,"summary":null,"term":"GO:0032454"},{"annotations":[61535,96095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140683"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a modified lysine residue at position 9 of the histone H3 protein.","definition_xrefs":["PMID:16362057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 demethylase activity","termid":"GO:0141052"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02401":null,"SJAG_03041":null,"SJAG_03664":null,"SJAG_03997":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032452"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0032452","GO:0140096","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"histone H3K9 demethylase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-997263","Reactome:R-HSA-9011949","Reactome:R-HSA-9011985"],"synonyms":[{"name":"histone H3-K49 demethylase activity","type":"exact"},{"name":"histone H3-methyl-lysine-9 demethylase activity","type":"exact"},{"name":"histone demethylase activity (H3-K9 specific)","type":"exact"}],"termid":"GO:0032454","terms_by_termid":{"GO:0032454":null,"GO:0140683":null}}


id: GO:0002869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of B cell deletion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of B cell tolerance induction","termid":"GO:0002663"},{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of B cell deletion","termid":"GO:0002867"},{"relation_name":"is_a","term_name":"positive regulation of B cell apoptotic process","termid":"GO:0002904"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in development","termid":"GO:1904747"},{"relation_name":"positively_regulates","term_name":"B cell deletion","termid":"GO:0002516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of B cell deletion","synonyms":[{"name":"activation of B cell deletion","type":"narrow"},{"name":"positive regulation of B lymphocyte deletion","type":"exact"},{"name":"positive regulation of B-cell deletion","type":"exact"},{"name":"positive regulation of B-lymphocyte deletion","type":"exact"},{"name":"stimulation of B cell deletion","type":"narrow"},{"name":"up regulation of B cell deletion","type":"exact"},{"name":"up-regulation of B cell deletion","type":"exact"},{"name":"upregulation of B cell deletion","type":"exact"}],"termid":"GO:0002869"}


id: PBO:0074464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase acid like 3A","termid":"PBO:0074464"}


id: PBO:0083919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1; involved in synthesis of long-chain dolichols (19-22 isoprene units; as opposed to Rer2p which synthesizes shorter-chain dolichols); localizes to lipid bodies; transcription is induced during stationary phase","termid":"PBO:0083919"}


id: MONDO:0017787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"erythroderma desquamativum","secondary_identifiers":["HGNC:1331","UMLS:C5551904","GARD:6878","MEDGEN:1790529","MESH:C535512","Orphanet:314"],"synonyms":[{"name":"Leiner disease","type":"exact"},{"name":"Leiner-Moussous desquamative erythroderma","type":"related"},{"name":"erythroderma desquamativa of Leiner","type":"related"},{"name":"erythroderma desquamativum of infancy","type":"related"},{"name":"generalised erythroderma, diarrhea, and failure to thrive","type":"related"},{"name":"generalized erythroderma, diarrhea, and failure to thrive","type":"related"}],"termid":"MONDO:0017787","xrefs":{"Monarch":{"xref_id":"0017787"}}}


id: PBO:0081950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc and ring finger 3","termid":"PBO:0081950"}


id: PBO:0074816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 16","termid":"PBO:0074816"}


id: MONDO:0018197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"},{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome, hepatocerebral form","termid":"MONDO:0100512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome, hepatocerebrorenal form","secondary_identifiers":["MEDGEN:1674910","Orphanet:363534","GARD:17564","UMLS:C5190602"],"synonyms":[{"name":"mtDNA depletion syndrome, hepatocerebrorenal form","type":"exact"}],"termid":"MONDO:0018197","xrefs":{"Monarch":{"xref_id":"0018197"}}}


id: GO:0006214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymidine metabolic process","termid":"GO:0046104"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside catabolic process","termid":"GO:0046127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"thymidine catabolic process","secondary_identifiers":["GO:0006215"],"synonyms":[{"name":"deoxyribosylthymine catabolic process","type":"exact"},{"name":"deoxyribosylthymine catabolism","type":"exact"},{"name":"thymidine breakdown","type":"exact"},{"name":"thymidine catabolism","type":"exact"},{"name":"thymidine degradation","type":"exact"}],"termid":"GO:0006214"}


id: MONDO:0018852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Achromatopsia (ACHM) is a rare autosomal recessive retinal disorder characterized by color blindness, nystagmus, photophobia, and severely reduced visual acuity due to the absence or impairment of cone function.","definition_xrefs":["Orphanet:49382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color vision disorder","termid":"MONDO:0001703"},{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"achromatopsia","secondary_identifiers":["UMLS:C0152200","DOID:13911","ICD9:368.54","NCIT:C84528","GARD:15015","MedDRA:10000454","MEDGEN:57751","SCTID:102450007","ICD10CM:H53.51"],"synonyms":[{"name":"ACHM","type":"exact"},{"name":"Pingelapese blindness","type":"exact"},{"name":"Rod monochromacy","type":"exact"},{"name":"Rod monochromatism","type":"exact"},{"name":"achromatopsia","type":"exact"},{"name":"complete or incomplete color blindness","type":"exact"},{"name":"complete or incomplete colour blindness","type":"exact"},{"name":"monochromatism","type":"exact"},{"name":"total color blindness","type":"exact"},{"name":"total colour blindness","type":"exact"}],"termid":"MONDO:0018852","xrefs":{"Monarch":{"xref_id":"0018852"}}}


id: PBO:0038918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor F5 pseudogene 2","termid":"PBO:0038918"}


id: MONDO:0016243
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemoglobin E disease (HbE) is a hemoglobinopathy characterized by production of abnormal variant hemoglobin known as hemoglobin E, with a generally benign, asymptomatic presentation.","definition_xrefs":["Orphanet:2133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anemia","termid":"MONDO:0002280"},{"relation_name":"is_a","term_name":"inherited hemoglobinopathy","termid":"MONDO:0019050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"hemoglobin E disease","secondary_identifiers":["GARD:2641","MEDGEN:68658","ICD9:282.7","MedDRA:10053215","NCIT:C35287","SCTID:25065001","UMLS:C0238159","DOID:5379","icd11.foundation:1898135714"],"synonyms":[{"name":"Hb-E disease","type":"exact"},{"name":"hemoglobin E disease","type":"exact"}],"termid":"MONDO:0016243","xrefs":{"Monarch":{"xref_id":"0016243"}}}


id: PBO:0041605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CA15 pseudogene 2","termid":"PBO:0041605"}


id: MONDO:0001550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Duane retraction syndrome (obsolete MONDO:0001550)","termid":"MONDO:0001550","xrefs":{"Monarch":{"xref_id":"0001550"}}}


id: PBO:0087876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional regulator; involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p to relieve Gal80p inhibition of Gal4p; binds galactose and ATP but does not have galactokinase activity; GAL3 has a paralog, GAL1, that arose from the whole genome duplication","termid":"PBO:0087876"}


id: PBO:0074148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member D1","termid":"PBO:0074148"}


id: MONDO:0014637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"DOCK2 deficiency","secondary_identifiers":["Orphanet:447737","DOID:0111951","OMIM:616433","GARD:12653","MEDGEN:901370","UMLS:C4225328"],"synonyms":[{"name":"IMD40","type":"related"},{"name":"immunodeficiency 40","type":"related"},{"name":"immunodeficiency type 40","type":"exact"}],"termid":"MONDO:0014637","xrefs":{"Monarch":{"xref_id":"0014637"}}}


id: RO:0002463
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"partner_in","termid":"RO:0002461"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target_participant_in","termid":"RO:0002463"}


id: PBO:0046843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 6","termid":"PBO:0046843"}


id: PBO:0083932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote G1 to S phase transition; plays a role in regulating transcription of other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis; acetyl-CoA induces CLN3 transcription in response to nutrient repletion to promote cell-cycle entry; cell cycle arrest phenotype of the cln1 cln2 cln3 triple null mutant is complemented by any of human cyclins CCNA2, CCNB1, CCNC, CCND1, or CCNE1","termid":"PBO:0083932"}


id: SO:0001256
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polyploid where the multiple chromosome set was derived from a different organism.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyploid","termid":"SO:0001254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allopolyploid","secondary_identifiers":["http://en.wikipedia.org/wiki/Allopolyploid"],"termid":"SO:0001256"}


id: GO:0032423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mismatch repair.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA repair","termid":"GO:0006282"},{"relation_name":"regulates","term_name":"mismatch repair","termid":"GO:0006298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of mismatch repair","termid":"GO:0032423"}


id: MONDO:0005684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of paralytic poliomyelitis affecting neurons of the medulla oblongata of the brain stem. Clinical features include impaired respiration, hypertension, alterations of vasomotor control, and dysphagia. Weakness and atrophy of the limbs and trunk due to spinal cord involvement is usually associated. (From Adams et al., Principles of Neurology, 6th ed, p765)","definition_xrefs":["MESH:D011052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paralytic poliomyelitis","termid":"MONDO:0000341"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"bulbar polio","secondary_identifiers":["ICD9:045.0","MEDGEN:45982","UMLS:C0032372","DOID:9786"],"synonyms":[{"name":"bulbar polio","type":"exact"},{"name":"bulbar poliomyelitis","type":"exact"},{"name":"medullary involvement poliomyelitis","type":"related"},{"name":"polio, bulbar","type":"related"},{"name":"poliomyelitis, medullary involvement","type":"related"}],"termid":"MONDO:0005684","xrefs":{"Monarch":{"xref_id":"0005684"}}}


id: PBO:0027746
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_regulation_of_sexual_differentiation_gene_mRNA_during_nitrogen_starvation","termid":"PBO:0027746"}


id: GO:0038152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a the C-C chemokine type 2 receptor (CCR4) on the surface of a cell binding to one of it's physiological ligands, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"C-C chemokine receptor CCR4 signaling pathway","synonyms":[{"name":"C-C chemokine receptor type 4 signaling pathway","type":"exact"},{"name":"chemokine receptor CCR4 signaling pathway","type":"exact"}],"termid":"GO:0038152"}


id: FYECO:0000031
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which potassium ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ K ions","synonyms":[{"name":"potassium ions added","type":"exact"}],"termid":"FYECO:0000031"}


id: GO:0050528
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(acyloxy)acyl group of bacterial toxin = 3-hydroxyacyl group of bacterial toxin + a fatty acid.","definition_xrefs":["EC:3.1.1.77","MetaCyc:3.1.1.77-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"acyloxyacyl hydrolase activity","secondary_identifiers":["RHEA:12032"],"termid":"GO:0050528"}


id: PR:Q08I43
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3'-5' exoribonuclease 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5' exonuclease eri1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.08","secondary_identifiers":["UniProtKB:Q08I43"],"synonyms":[{"name":"Spom972h-ERI1","type":"exact"},{"name":"enhanced RNAi protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q08I43"}


id: PBO:0048427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine amidotransferase class 1 domain containing 3","termid":"PBO:0048427"}


id: PBO:0045558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 8 pseudogene 2","termid":"PBO:0045558"}


id: RO:0002418
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causal_relation_between_processes","termid":"RO:0002501"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of_or_within","synonyms":[{"name":"affects","type":"related"}],"termid":"RO:0002418"}


id: MONDO:0002279
data:
  {"annotated_genes":["SJAG_05277","SJAG_03866","SJAG_00115","SJAG_02117","SJAG_04757"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011417"},{"annotations":[88931,88930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011706"},{"annotations":[88916],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010476"},{"annotations":[87613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014290"}]},"cv_name":"mondo","definition":"Disorders in the processing of iron in the body: its absorption, transport, storage, and utilization.","definition_xrefs":["MESH:D019189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00115":null,"SJAG_02117":null,"SJAG_03866":null,"SJAG_04757":null,"SJAG_05277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"iron metabolism disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:8438","ICD9:275.0","UMLS:C0012715","DOID:2351","ICD10CM:E83.1","SCTID:30913008"],"synonyms":[{"name":"disorder of iron metabolism","type":"exact"},{"name":"disorder, iron metabolism","type":"related"},{"name":"disorders, iron metabolism","type":"related"},{"name":"iron disorder","type":"exact"},{"name":"iron metabolism disorder","type":"related"},{"name":"metabolism disorder, iron","type":"related"},{"name":"metabolism disorders, iron","type":"related"}],"termid":"MONDO:0002279","terms_by_termid":{"MONDO:0010476":null,"MONDO:0011417":null,"MONDO:0011706":null,"MONDO:0014290":null},"xrefs":{"Monarch":{"xref_id":"0002279"}}}


id: PBO:0027051
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-enlarged_post-anaphase_array_with_increased_number_of_microtubules","termid":"PBO:0027051"}


id: GO:0023068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal is conveyed via the phloem.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transmission via phloem (obsolete GO:0023068)","synonyms":[{"name":"signal transmission via phloem","type":"exact"}],"termid":"GO:0023068"}


id: GO:0043517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA damage response, signal transduction by p53 class mediator","termid":"GO:0043516"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction by p53 class mediator","termid":"GO:1901798"},{"relation_name":"positively_regulates","term_name":"DNA damage response, signal transduction by p53 class mediator","termid":"GO:0030330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of DNA damage response, signal transduction by p53 class mediator","synonyms":[{"name":"activation of DNA damage response, signal transduction by p53 class mediator","type":"narrow"},{"name":"positive regulation of p53 induced by DNA damage response","type":"exact"},{"name":"stimulation of DNA damage response, signal transduction by p53 class mediator","type":"narrow"},{"name":"up regulation of DNA damage response, signal transduction by p53 class mediator","type":"exact"},{"name":"up-regulation of DNA damage response, signal transduction by p53 class mediator","type":"exact"},{"name":"upregulation of DNA damage response, signal transduction by p53 class mediator","type":"exact"}],"termid":"GO:0043517"}


id: GO:0047958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycine + 2-oxoglutarate = glyoxylate + L-glutamate.","definition_xrefs":["MetaCyc:GLYCINE-AMINOTRANSFERASE-RXN","EC:2.6.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016769"],"is_obsolete":false,"name":"glycine:2-oxoglutarate aminotransferase activity","secondary_identifiers":["RHEA:14089"],"synonyms":[{"name":"L-glutamate:glyoxylate aminotransferase activity","type":"exact"},{"name":"glutamate-glyoxylate transaminase activity","type":"exact"},{"name":"glutamic-glyoxylic transaminase activity","type":"related"},{"name":"glycine aminotransferase activity","type":"broad"},{"name":"glycine transaminase activity","type":"broad"},{"name":"glyoxylate-glutamate aminotransferase activity","type":"related"},{"name":"glyoxylate-glutamic transaminase activity","type":"related"}],"termid":"GO:0047958"}


id: MONDO:1011680
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder, non-human animal","termid":"MONDO:1011317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postpartum dysgalactia syndrome, non-human animal","secondary_identifiers":["OMIA:001822"],"termid":"MONDO:1011680","xrefs":{"Monarch":{"xref_id":"1011680"}}}


id: MONDO:0014344
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital heart defects, multiple types in which the cause of the disease is a mutation in the NR2F2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart defects, multiple types","termid":"MONDO:0000119"},{"relation_name":"is_a","term_name":"familial atrioventricular septal defect","termid":"MONDO:0020290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"congenital heart defects, multiple types, 4","secondary_identifiers":["UMLS:C4014310","MEDGEN:862747","OMIM:615779"],"synonyms":[{"name":"CHTD4","type":"related"},{"name":"NR2F2 congenital heart defects, multiple types","type":"exact"},{"name":"congenital heart defects, multiple types caused by mutation in NR2F2","type":"exact"},{"name":"congenital heart defects, multiple types, 4","type":"exact"}],"termid":"MONDO:0014344","xrefs":{"Monarch":{"xref_id":"0014344"}}}


id: PBO:0031056
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mixed_population_including_spores_and_undivided_germinated_spores_(obsolete_FYPO:0000321)","termid":"PBO:0031056"}


id: PBO:0030484
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_sodium_export","termid":"PBO:0030484"}


id: PATO:0000703
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000703 absolute threshold value (obsolete PATO:0000703)","termid":"PATO:0000703"}


id: MONDO:0001365
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"middle ear disorder","termid":"MONDO:0003276"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"necrosis of ear ossicle","secondary_identifiers":["DOID:11783","ICD9:385.24"],"synonyms":[{"name":"partial loss or necrosis of ear ossicles","type":"exact"}],"termid":"MONDO:0001365","xrefs":{"Monarch":{"xref_id":"0001365"}}}


id: GO:0090504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of one cell sheet over other cells or yolk.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial sheet","termid":"GO:0002011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epiboly","termid":"GO:0090504"}


id: PR:P87114
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fft1 gene.","definition_xrefs":["UniProtKB:P87114","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent helicase fft1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.08c","synonyms":[{"name":"Fun thirty-related protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-fft1","type":"exact"}],"termid":"PR:P87114"}


id: PBO:0109116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 13, eEF1A N-terminus and K55","termid":"PBO:0109116"}


id: PATO:0000997
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000997 relative viscosity value (obsolete PATO:0000997)","termid":"PATO:0000997"}


id: GO:0160243
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a modified lysine residue of the histone H1 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate.","definition_xrefs":["PMID:19144645"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone demethylase activity","termid":"GO:0032452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0032452"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0032452","GO:0003824"],"is_obsolete":false,"name":"histone H1 demethylase activity","termid":"GO:0160243"}


id: PBO:0087219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scaffold protein in the HKR1 sub-branch of the Hog1p-signaling pathway; physically interacts with the cytoplasmic domain of Hkr1p, and with Sho1p, Pbs2p, and Ste11p; prevents cross-talk signaling from Hkr1p of the osmotic stress MAPK cascade to the Kss1p MAPK cascade; non-essential gene","termid":"PBO:0087219"}


id: MONDO:0001504
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by recurrent sexual urges, fantasies, or behaviors involving the use of nonliving objects (the \\\"fetish\\\").","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraphilic disorder","termid":"MONDO:0000596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetishistic disorder","secondary_identifiers":["ICD10CM:F65.0","NCIT:C94353","ICD9:302.81","UMLS:C0015957","MEDGEN:8827","DOID:1235","SCTID:59174009","MESH:D005329"],"synonyms":[{"name":"fetishism","type":"exact"}],"termid":"MONDO:0001504","xrefs":{"Monarch":{"xref_id":"0001504"}}}


id: GO:0070940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form.","definition_xrefs":["GOC:mah","PMID:17079683","GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete dephosphorylation of RNA polymerase II C-terminal domain (obsolete GO:0070940)","synonyms":[{"name":"CTD domain dephosphorylation of RNA polymerase II","type":"exact"},{"name":"generation of II(A) form of RNA polymerase II","type":"exact"},{"name":"generation of hypophosphorylated CTD of RNA polymerase II","type":"exact"}],"termid":"GO:0070940"}


id: GO:1902654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving aromatic primary alcohol.","definition_xrefs":["GO_REF:0000068","GOC:TermGenie","GOC:mengo_curators","PMID:19219878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"aromatic primary alcohol metabolic process","synonyms":[{"name":"aromatic primary alcohol metabolism","type":"exact"}],"termid":"GO:1902654"}


id: PBO:0034542
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_glutamate_synthase_(NADH)_activity","termid":"PBO:0034542"}


id: PBO:0075336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sortilin related VPS10 domain containing receptor 1","termid":"PBO:0075336"}


id: GO:0010726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.","definition_xrefs":["GOC:hjd","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrogen peroxide metabolic process","termid":"GO:0010310"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hydrogen peroxide metabolic process","synonyms":[{"name":"positive regulation of hydrogen peroxide metabolism","type":"exact"}],"termid":"GO:0010726"}


id: GO:0015743
data:
  {"annotated_genes":["SJAG_02140","SJAG_02011","SJAG_01406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65174],"is_not":false,"summary":null,"term":"GO:0015743"},{"annotations":[103673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098714"},{"annotations":[69137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071423"}]},"cv_name":"biological_process","definition":"The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4-dicarboxylate transport","termid":"GO:0015740"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01406":null,"SJAG_02011":null,"SJAG_02140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"malate transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial alpha-ketoglutarate/malate transport","type":"related"}],"termid":"GO:0015743","terms_by_termid":{"GO:0015743":null,"GO:0071423":null,"GO:0098714":null}}


id: PBO:0073252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEPTIN4 antisense RNA 1","termid":"PBO:0073252"}


id: PBO:0078968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon AGA) 7-1","termid":"PBO:0078968"}


id: FYPO:0005974
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in the mitochondria is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"},{"relation_name":"is_a","term_name":"normal level of substance in mitochondrion","termid":"FYPO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial protein level","synonyms":[{"name":"normal mitochondrial protein accumulation","type":"related"},{"name":"normal mitochondrial protein level during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial protein level during vegetative growth","type":"exact"}],"termid":"FYPO:0005974"}


id: PR:O43075
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A translational activator of cytochrome c oxidase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional regulatory protein C8D2.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.12c","secondary_identifiers":["UniProtKB:O43075"],"synonyms":[{"name":"Spom972h-TACO1","type":"exact"}],"termid":"PR:O43075"}


id: PBO:0041773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 12","termid":"PBO:0041773"}


id: GO:0099526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals that conveys information from the presynapse to the nucleus via cytoskeletal transport of a protein from a presynapse to the component to the nucleus where it affects biochemical processes that occur in the nucleus (e.g DNA transcription, mRNA splicing, or DNA/histone modifications).","definition_xrefs":["PMID:25652077","PMID:24317321","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"presynaptic signal transduction","termid":"GO:0098928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"presynapse to nucleus signaling pathway","synonyms":[{"name":"presynaptic signaling to nucleus","type":"exact"}],"termid":"GO:0099526"}


id: GO:0150044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic dense core vesicle exocytosis.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:19448629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dense core granule exocytosis","termid":"GO:1905413"},{"relation_name":"regulates","term_name":"postsynaptic dense core vesicle exocytosis","termid":"GO:0150038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"regulation of postsynaptic dense core vesicle exocytosis","termid":"GO:0150044"}


id: GO:0051778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ent-7-alpha-hydroxykaurenoate + NADPH + H+ + O2 = gibberellin 12-aldehyde + NADP+ + 2 H2O. This is the second of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12).","definition_xrefs":["EC:1.14.13.79","MetaCyc:RXN1F-160"],"gene_count":0,"genotype_count":0,"name":"obsolete ent-7-alpha-hydroxykaurenoate oxidase activity (obsolete GO:0051778)","termid":"GO:0051778"}


id: MONDO:0012638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia-brain atrophy (MOBA) syndrome is a rare genetic neurodegenerative disorder characterized by congenital microphthalmia, sunken eyes, blindness, microcephaly, severe intellectual disability, progressive spasticity, and seizures. Psychomotor development is normal in the first 6-8 months of life and thereafter declines rapidly and continuously. Brain MRI reveals progressive and extensive degenerative changes, especially cortex, cerebellum, brainstem, and corpus callosum atrophy, with complete loss of cerebral white matter.","definition_xrefs":["Orphanet:77299"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic microphthalmia","termid":"MONDO:0016073"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005328"],"is_obsolete":false,"name":"microphthalmia-brain atrophy syndrome","secondary_identifiers":["DOID:0111812","MEDGEN:370809","OMIM:611222","SCTID:720010009","GARD:9292","UMLS:C1970013","MESH:C566985"],"synonyms":[{"name":"MCOPS10","type":"exact"},{"name":"MOBA","type":"related"},{"name":"MOBA syndrome","type":"exact"},{"name":"microphthalmia and brain atrophy","type":"related"},{"name":"microphthalmia syndromic 10","type":"related"},{"name":"microphthalmia, syndromic 10","type":"related"},{"name":"syndromic microphthalmia type 10","type":"exact"}],"termid":"MONDO:0012638","xrefs":{"Monarch":{"xref_id":"0012638"}}}


id: PBO:0056066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laeverin","termid":"PBO:0056066"}


id: PBO:0060876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear envelope integral membrane protein 1","termid":"PBO:0060876"}


id: GO:0052835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 3,4,6-trisphosphate + ATP = 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ADP + H+.","definition_xrefs":["PMID:11909533","RHEA:70287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol trisphosphate kinase activity","termid":"GO:0051766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"inositol-3,4,6-trisphosphate 1-kinase activity","secondary_identifiers":["MetaCyc:RXN-10984","Reactome:R-HSA-1855169"],"synonyms":[{"name":"1D-myo-inositol-trisphosphate 1-kinase activity","type":"broad"},{"name":"IP3 1-kinase activity","type":"broad"},{"name":"Ins(3,4,6)P3 1-kinase activity","type":"related"},{"name":"inositol 3,4,6-trisphosphate 1-kinase activity","type":"exact"},{"name":"inositol-trisphosphate 1-kinase activity","type":"broad"},{"name":"ins(3,4,6)P(3) 1-kinase activity","type":"related"}],"termid":"GO:0052835"}


id: PBO:0078523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 14","termid":"PBO:0078523"}


id: MONDO:0030491
data:
  {"annotated_genes":["SJAG_03193"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88034],"is_not":false,"summary":null,"term":"MONDO:0030491"}]},"cv_name":"mondo","definition":"An autosomal recessive immunodeficiency caused by a variation in the ZNFX1 gene, characterized by severe infections by both RNA and DNA viruses and virally triggered inflammatory episodes with hemophagocytic lymphohistiocytosis-like disease, early-onset seizures, and renal and lung disease.","definition_xrefs":["PMID:33872655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03193":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 91 and hyperinflammation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619644","DOID:0061061","MEDGEN:1794283","UMLS:C5562073"],"synonyms":[{"name":"IMD91","type":"exact"},{"name":"immunodeficiency, autosomal recessive, due to ZNFX1 deficiency:","type":"exact"}],"termid":"MONDO:0030491","terms_by_termid":{"MONDO:0030491":null},"xrefs":{"Monarch":{"xref_id":"0030491"}}}


id: PBO:0068272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease A family member 9 (inactive)","termid":"PBO:0068272"}


id: PATO:0002186
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole.","definition_xrefs":["PATOC:JH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polarity","termid":"PATO:0002186"}


id: PBO:0047500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flap structure-specific endonuclease 1 pseudogene 1","termid":"PBO:0047500"}


id: GO:0106172
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of a COPI-coated endocytic vesicle.","definition_xrefs":["GOC:pde","PMID:29535154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle lumen","termid":"GO:0060205"},{"relation_name":"part_of","term_name":"COPI-coated vesicle","termid":"GO:0030137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"COPI-coated vesicle lumen","termid":"GO:0106172"}


id: MONDO:0042498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"excluded_subClassOf","term_name":"ichthyosis","termid":"MONDO:0019269"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ruzicka-Goerz-Anton syndrome","secondary_identifiers":["MESH:C537192","UMLS:C2931438","MEDGEN:444055"],"synonyms":[{"name":"Ruzicka Goerz Anton syndrome","type":"exact"},{"name":"ichthyosis congenita, neurosensory deafness, oligophrenia, dental aplasia, brachydactyly, clinodactyly, accessory cervical ribs and thyroid carcinoma","type":"related"},{"name":"ichthyosis deafness intellectual disability skeletal anomalies","type":"related"},{"name":"ichthyosis deafness mental retardation skeletal anomalies","type":"related"}],"termid":"MONDO:0042498","xrefs":{"Monarch":{"xref_id":"0042498"}}}


id: PBO:0089388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S8","termid":"PBO:0089388"}


id: GO:0046773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts translation termination of host mRNAs. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host gene expression","termid":"GO:0039656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host translation termination","synonyms":[{"name":"suppression by virus of host translation termination","type":"narrow"},{"name":"viral inhibition of termination of host cell protein biosynthesis","type":"narrow"},{"name":"viral inhibition of termination of host cell protein biosynthetic process","type":"narrow"},{"name":"viral suppression of termination by host of host cell protein biosynthesis","type":"narrow"},{"name":"viral suppression of termination by host of host cell protein biosynthetic process","type":"narrow"}],"termid":"GO:0046773"}


id: PBO:0071460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 1","termid":"PBO:0071460"}


id: PBO:0063079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAPPA antisense RNA 1","termid":"PBO:0063079"}


id: PBO:0045037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dispatched RND transporter family member 2","termid":"PBO:0045037"}


id: PBO:0065978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPA1 related single stranded DNA binding protein, X-linked","termid":"PBO:0065978"}


id: GO:0022889
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of serine from one side of a membrane to the other. Serine is 2-amino-3-hydroxypropanoic acid.","definition_xrefs":["RHEA:35031","GOC:mtg_transport","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete serine transmembrane transporter activity (obsolete GO:0022889)","termid":"GO:0022889"}


id: PBO:0052421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kirre like nephrin family adhesion molecule 3","termid":"PBO:0052421"}


id: PBO:0076849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis associated actin remodelling kinase 1","termid":"PBO:0076849"}


id: MONDO:0002996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the cavernous sinus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skull base meningioma","termid":"MONDO:0002998"},{"relation_name":"is_a","term_name":"vein disorder","termid":"MONDO:0004634"},{"relation_name":"is_a","term_name":"blood vessel neoplasm","termid":"MONDO:0021080"},{"relation_name":"is_a","term_name":"vascular bone neoplasm","termid":"MONDO:0024499"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cavernous sinus meningioma","secondary_identifiers":["DOID:4435","UMLS:C1332865","NCIT:C5268","MEDGEN:232034"],"synonyms":[{"name":"cavernous sinus meningioma (disease)","type":"exact"},{"name":"meningioma (disease) of cavernous sinus","type":"exact"},{"name":"meningioma of cavernous sinus","type":"exact"},{"name":"meningioma of the cavernous sinus","type":"exact"}],"termid":"MONDO:0002996","xrefs":{"Monarch":{"xref_id":"0002996"}}}


id: PBO:0066792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 91","termid":"PBO:0066792"}


id: PBO:0062634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily J member 1 pseudogene","termid":"PBO:0062634"}


id: PBO:0075808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single stranded DNA binding protein 1","termid":"PBO:0075808"}


id: GO:0086056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an AV node cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"voltage-gated calcium channel activity involved in AV node cell action potential","synonyms":[{"name":"voltage-gated calcium channel activity involved in AV node cardiac muscle cell action potential","type":"exact"},{"name":"voltage-gated calcium channel activity involved in atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086056"}


id: PATO:0000808
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000808 reflex value (obsolete PATO:0000808)","termid":"PATO:0000808"}


id: PBO:0026692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_tellurite","termid":"PBO:0026692"}


id: PBO:0068102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 409","termid":"PBO:0068102"}


id: GO:0033112
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The double lipid bilayer enclosing the cyanelle and separating its contents from the rest of the cytoplasm; includes the intermembrane space.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid envelope","termid":"GO:0009526"},{"relation_name":"part_of","term_name":"cyanelle","termid":"GO:0009842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cyanelle envelope","termid":"GO:0033112"}


id: PBO:0079148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPAN9 intronic transcript 1","termid":"PBO:0079148"}


id: MONDO:0009877
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Laron syndrome is a congenital disorder characterized by marked short stature associated with normal or high serum growth hormone (GH) and low serum insulin-like growth factor-1 (IGF-I) levels which fail to rise after exogenous GH administration.","definition_xrefs":["Orphanet:633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"growth hormone insensitivity syndrome","termid":"MONDO:0015892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Laron syndrome","secondary_identifiers":["NCIT:C130994","GARD:6859","DOID:9521","OMIM:262500","UMLS:C0271568","NORD:1209","MESH:D046150","SCTID:38196001","MEDGEN:78776"],"synonyms":[{"name":"GH receptor deficiency","type":"exact"},{"name":"Growth Hormone Insensitivity","type":"exact"},{"name":"Growth hormone receptor deficiency","type":"exact"},{"name":"Laron dwarfism","type":"related"},{"name":"Laron syndrome","type":"exact"},{"name":"Laron type pituitary dwarfism I","type":"related"},{"name":"Laron-type dwarfism","type":"exact"},{"name":"Laron-type isolated somatotropin defect","type":"exact"},{"name":"complete growth hormone insensitivity","type":"exact"},{"name":"growth hormone insensitivity syndrome","type":"related"},{"name":"pituitary dwarfism 2","type":"related"},{"name":"pituitary dwarfism II","type":"related"},{"name":"primary GH insensitivity","type":"exact"},{"name":"primary GH resistance","type":"exact"},{"name":"primary growth hormone insensitivity","type":"exact"},{"name":"primary growth hormone resistance","type":"exact"},{"name":"short stature due to growth hormone resistance","type":"exact"}],"termid":"MONDO:0009877","xrefs":{"Monarch":{"xref_id":"0009877"}}}


id: PBO:0027156
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_asparagine_level","termid":"PBO:0027156"}


id: GO:0045672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoclast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte differentiation","termid":"GO:0002763"},{"relation_name":"is_a","term_name":"regulation of osteoclast differentiation","termid":"GO:0045670"},{"relation_name":"positively_regulates","term_name":"osteoclast differentiation","termid":"GO:0030316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoclast differentiation","synonyms":[{"name":"activation of osteoclast differentiation","type":"narrow"},{"name":"stimulation of osteoclast differentiation","type":"narrow"},{"name":"up regulation of osteoclast differentiation","type":"exact"},{"name":"up-regulation of osteoclast differentiation","type":"exact"},{"name":"upregulation of osteoclast differentiation","type":"exact"}],"termid":"GO:0045672"}


id: PBO:0005253
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally induced by stress","termid":"PBO:0005253"}


id: GO:0030682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts the normal execution of a host organism's defense response. The host defense response is mounted by the host in response to the presence of the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated response to host defenses","termid":"GO:0052200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host defenses","secondary_identifiers":["GO:0051834","GO:0044415","GO:0051807","GO:0044413","GO:0051832"],"synonyms":[{"name":"avoidance of defenses of other organism during symbiotic interaction","type":"related"},{"name":"avoidance of defenses of other organism involved in symbiotic interaction","type":"narrow"},{"name":"avoidance of host defences","type":"narrow"},{"name":"avoidance of host defenses","type":"narrow"},{"name":"evasion of host defence response","type":"narrow"},{"name":"evasion of other organism defence response","type":"narrow"},{"name":"evasion or tolerance of defense response of other organism during symbiotic interaction","type":"related"},{"name":"evasion or tolerance of defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"evasion or tolerance of defenses of other organism","type":"related"},{"name":"evasion or tolerance of defenses of other organism during symbiotic interaction","type":"related"},{"name":"evasion or tolerance of defenses of other organism involved in symbiotic interaction","type":"related"},{"name":"evasion or tolerance of host defense response","type":"narrow"},{"name":"evasion or tolerance of host defenses","type":"related"},{"name":"mitigation of host defenses by symbiont","type":"exact"},{"name":"perturbation of host defenses by symbiont","type":"exact"}],"termid":"GO:0030682"}


id: GO:0032023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic processing of trypsinogen to the active form, trypsin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zymogen activation","termid":"GO:0031638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"trypsinogen activation","synonyms":[{"name":"cleavage of trypsinogen to trypsin","type":"exact"}],"termid":"GO:0032023"}


id: PBO:0047611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin homology 2 domain containing 3","termid":"PBO:0047611"}


id: MONDO:0030034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy, progressive myoclonic, 11","secondary_identifiers":["UMLS:C5394362","MEDGEN:1716712","OMIM:618876"],"synonyms":[{"name":"EPILEPSY, PROGRESSIVE MYOCLONIC, 11","type":"exact"},{"name":"EPM11","type":"exact"},{"name":"epilepsy, progressive myoclonic, 11","type":"exact"}],"termid":"MONDO:0030034","xrefs":{"Monarch":{"xref_id":"0030034"}}}


id: FYPO:0003956
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A translation phenotype in which a tRNA pairs with mRNA at the stop codon UAA, and incorporates an amino acid residue into the nascent polypeptide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal translation","termid":"FYPO:0001797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"UAA suppression","synonyms":[{"name":"UAA suppressor","type":"exact"},{"name":"ochre suppression","type":"exact"},{"name":"ochre suppressor","type":"exact"}],"termid":"FYPO:0003956"}


id: GO:0001899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:dph","GOC:tb","GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cytolysis by symbiont of host cells (obsolete GO:0001899)","synonyms":[{"name":"down regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"down-regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"downregulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"inhibition by symbiont of cytolysis of host cells","type":"narrow"},{"name":"negative regulation by symbiont of cytolysis of host cells","type":"exact"}],"termid":"GO:0001899"}


id: PBO:0042355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD99 molecule (Xg blood group)","termid":"PBO:0042355"}


id: PBO:0055746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA regulator of hepatic lineages 1","termid":"PBO:0055746"}


id: PBO:0031438
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_formamide","termid":"PBO:0031438"}


id: MONDO:0016987
data:
  {"annotated_genes":["SJAG_01229","SJAG_16459"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87435,87436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008695"}]},"cv_name":"mondo","definition":"Neuroacanthocytosis (NA) syndromes are a group of genetic diseases characterized by the association of red blood cell acanthocytosis (deformed erythrocytes with spike-like protrusions) and progressive degeneration of the basal ganglia.","definition_xrefs":["Orphanet:263440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"Huntington disease-like syndrome","termid":"MONDO:0015548"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01229":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"neuroacanthocytosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D054546","NORD:1501","NCIT:C84926","NANDO:1200013","icd11.foundation:1012724153","GARD:10902","DOID:0050765"],"synonyms":[{"name":"neuroacanthocytosis syndrome","type":"related"}],"termid":"MONDO:0016987","terms_by_termid":{"MONDO:0008695":null},"xrefs":{"Monarch":{"xref_id":"0016987"}}}


id: GO:0035251
data:
  {"annotated_genes":["SJAG_01288","SJAG_00876","SJAG_01427","SJAG_01531","SJAG_03587","SJAG_00394","SJAG_00129","SJAG_05285","SJAG_04571","SJAG_02222"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81947,115221,77791,76736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003843"},{"annotations":[95355,103080,80788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003825"},{"annotations":[117883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140752"},{"annotations":[68393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004581"},{"annotations":[81481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003980"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a glucosyl group from UDP-glucose to an acceptor molecule.","definition_xrefs":["PMID:19858195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00394":null,"SJAG_00876":null,"SJAG_01288":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_02222":null,"SJAG_03587":null,"SJAG_04571":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"UDP-glucosyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1912353"],"termid":"GO:0035251","terms_by_termid":{"GO:0003825":null,"GO:0003843":null,"GO:0003980":null,"GO:0004581":null,"GO:0140752":null}}


id: PBO:0047777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXC1 upstream transcript","termid":"PBO:0047777"}


id: PR:O74742
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A folylpolyglutamate synthase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11136:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folylpolyglutamate synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.17","secondary_identifiers":["UniProtKB:O74742"],"synonyms":[{"name":"FPGS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC1709.17","type":"related"},{"name":"Spom972h-FPGS","type":"exact"},{"name":"folylpoly-gamma-glutamate synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tetrahydrofolate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tetrahydrofolylpolyglutamate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74742"}


id: GO:0017013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a flavin group to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein flavinylation","synonyms":[{"name":"protein amino acid flavinylation","type":"exact"}],"termid":"GO:0017013"}


id: PR:O14174
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spt20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit spt20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.10c","synonyms":[{"name":"Spom972h-spt20","type":"exact"}],"termid":"PR:O14174"}


id: MONDO:1010026
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Budd-Chiari syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder, non-human animal","termid":"MONDO:1011306"},{"relation_name":"is_a","term_name":"liver disorder, non-human animal","termid":"MONDO:1012967"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Budd-Chiari syndrome, non-human animal","secondary_identifiers":["OMIA:001203"],"termid":"MONDO:1010026","xrefs":{"Monarch":{"xref_id":"1010026"}}}


id: PATO:0002435
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part.","definition_xrefs":["merriam-webster:merriam-webster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abut","termid":"PATO:0002435"}


id: MONDO:0859567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome","termid":"MONDO:0031329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 2","secondary_identifiers":["UMLS:C5676895","DOID:0081125","MEDGEN:1803802","OMIM:616994"],"termid":"MONDO:0859567","xrefs":{"Monarch":{"xref_id":"0859567"}}}


id: PBO:0006187
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_upstream_target","termid":"PBO:0006187"}


id: GO:0019273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-alanine, via the intermediate ornithine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ornithine metabolic process","termid":"GO:0006591"},{"relation_name":"is_a","term_name":"L-alanine biosynthetic process","termid":"GO:0042852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"L-alanine biosynthetic process via ornithine","synonyms":[{"name":"L-alanine anabolism via ornithine","type":"exact"},{"name":"L-alanine formation via ornithine","type":"exact"},{"name":"L-alanine synthesis via ornithine","type":"exact"}],"termid":"GO:0019273"}


id: FYPO:0002406
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, contains one or more septa, and is curved along the long axis, and the cell diameter is larger than normal and the cell length is shorter than normal. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"viable curved stubby vegetative cell","termid":"FYPO:0002405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0001985","FYPO:0000004"],"is_obsolete":false,"name":"viable curved stubby septated vegetative cell","synonyms":[{"name":"curved stubby septated viable cell","type":"exact"},{"name":"viable curved stubby septated cell during vegetative growth","type":"exact"},{"name":"viable curved stubby septated vegetative cell during mitotic cell cycle","type":"related"},{"name":"viable curved watermelon-shaped septated vegetative cell","type":"exact"}],"termid":"FYPO:0002406"}


id: MONDO:1010192
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Central core myopathy that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myofibrillar myopathy, non-human animal","termid":"MONDO:1010208"},{"relation_name":"is_a","term_name":"congenital nervous system disorder, non-human animal","termid":"MONDO:1011308"},{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central core myopathy, non-human animal","secondary_identifiers":["OMIA:000172"],"termid":"MONDO:1010192","xrefs":{"Monarch":{"xref_id":"1010192"}}}


id: GO:0043010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye development","termid":"GO:0001654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"camera-type eye development","secondary_identifiers":["GO:0001747","GO:0031075"],"termid":"GO:0043010"}


id: PBO:0080272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 35 pseudogene","termid":"PBO:0080272"}


id: GO:0070826
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic protein complex that contains integrin, mobilferrin and a flavin monooxygenase, is capable of reducing Fe(III) to Fe(II) utilizing NADPH, and is involved in iron transport. Fe(II) is required in the cell as the substrate for ferrochelatase in the synthesis of heme.","definition_xrefs":["GOC:rph","PMID:8639593","PMID:11842004","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"paraferritin complex","termid":"GO:0070826"}


id: GO:0021714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the inferior olivary nucleus is generated and organized. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements.","definition_xrefs":["ISBN:0838580343","GOC:dph","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"medulla oblongata morphogenesis","termid":"GO:0021579"},{"relation_name":"part_of","term_name":"inferior olivary nucleus development","termid":"GO:0021713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior olivary nucleus morphogenesis","synonyms":[{"name":"inferior olive morphogenesis","type":"related"}],"termid":"GO:0021714"}


id: MONDO:0044878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germ cell tumor that occurs during adulthood.","definition_xrefs":["NCIT:C114777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ cell tumor","termid":"MONDO:0005040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adult germ cell tumor","secondary_identifiers":["UMLS:C3900101","MEDGEN:859695"],"synonyms":[{"name":"Adult germ cell tumor","type":"exact"},{"name":"Adult germ cell tumour","type":"exact"},{"name":"germ cell tumor","type":"broad"},{"name":"germ cell tumor of adults","type":"exact"},{"name":"germ cell tumour","type":"broad"},{"name":"germ cell tumour of adults","type":"exact"}],"termid":"MONDO:0044878","xrefs":{"Monarch":{"xref_id":"0044878"}}}


id: PBO:0017759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase involved in NADPH regeneration (predicted)","termid":"PBO:0017759"}


id: PBO:0031157
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_cell_cycle_phase","termid":"PBO:0031157"}


id: PATO:0002372
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viviparous organism that has given birth five or more times.","definition_xrefs":["wiki:http://en.wikipedia.org/wiki/Parity_(biology)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiparous","termid":"PATO:0002369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grand multi[arous","termid":"PATO:0002372"}


id: GO:0009909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of flower development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of post-embryonic development","termid":"GO:0048580"},{"relation_name":"is_a","term_name":"regulation of shoot system development","termid":"GO:0048831"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of flower development","termid":"GO:0009909"}


id: GO:0008559
data:
  {"annotated_genes":["SJAG_03363","SJAG_05213"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98087,120019],"is_not":false,"summary":null,"term":"GO:0008559"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out).","definition_xrefs":["EC:7.6.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03363":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type xenobiotic transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0005226","GO:0008560","MetaCyc:3.6.3.44-RXN","Reactome:R-HSA-9757139"],"synonyms":[{"name":"ATP phosphohydrolase (xenobiotic-exporting)","type":"related"},{"name":"ATP-dependent xenobiotic transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled xenobiotic transmembrane transporter activity","type":"related"},{"name":"MDR protein","type":"related"},{"name":"P-glycoprotein","type":"related"},{"name":"PDR protein","type":"related"},{"name":"multidrug resistance exporter","type":"related"},{"name":"multidrug-resistance protein","type":"related"},{"name":"pleiotropic-drug-resistance protein","type":"related"},{"name":"xenobiotic ABC transporter","type":"narrow"},{"name":"xenobiotic transmembrane transporting ATPase activity","type":"exact"}],"termid":"GO:0008559","terms_by_termid":{"GO:0008559":null}}


id: GO:0085044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host organism cuticle. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host anatomical structure","termid":"GO:0052111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host cuticle","synonyms":[{"name":"catabolism of host cuticle","type":"exact"},{"name":"degradation of host cuticle","type":"related"},{"name":"disassembly by symbiont of host cuticle","type":"related"}],"termid":"GO:0085044"}


id: PBO:0066020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP1 pseudogene 1","termid":"PBO:0066020"}


id: PBO:0084405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lysophosphatidic acid acyltransferase; involved in triacelglyceride homeostasis and lipid droplet formation; localized to lipid droplets and the ER; specificity for oleoyl-CoA","termid":"PBO:0084405"}


id: PBO:0042698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsin like elastase 3B","termid":"PBO:0042698"}


id: GO:0050163
data:
  {"annotated_genes":["SJAG_00493"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108816],"is_not":false,"summary":null,"term":"GO:0050163"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: oxaloacetate = <stereo>enol</stereo>-oxaloacetate.","definition_xrefs":["EC:5.3.2.2","RHEA:16021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting keto- and enol-groups","termid":"GO:0016862"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00493":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"oxaloacetate tautomerase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00363","MetaCyc:OXALOACETATE-TAUTOMERASE-RXN"],"synonyms":[{"name":"oxalacetic keto-enol isomerase activity","type":"related"},{"name":"oxaloacetate keto-enol tautomerase activity","type":"related"},{"name":"oxaloacetate keto-enol-isomerase activity","type":"related"}],"termid":"GO:0050163","terms_by_termid":{"GO:0050163":null}}


id: MONDO:0011741
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Hirschsprung disease, susceptibility to","termid":"MONDO:0100179"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hirschsprung disease, susceptibility to, 6","secondary_identifiers":["OMIM:606874","UMLS:C1969837","MEDGEN:369600"],"synonyms":[{"name":"HSCR6","type":"exact"},{"name":"Hirschsprung disease, susceptibility to, 6","type":"exact"}],"termid":"MONDO:0011741","xrefs":{"Monarch":{"xref_id":"0011741"}}}


id: PBO:0043040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chimerin 2","termid":"PBO:0043040"}


id: GO:1900941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of (Z)-nonadeca-1,14-diene biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of olefin biosynthetic process","termid":"GO:1900911"},{"relation_name":"is_a","term_name":"regulation of (Z)-nonadeca-1,14-diene metabolic process","termid":"GO:1900938"},{"relation_name":"regulates","term_name":"(Z)-nonadeca-1,14-diene biosynthetic process","termid":"GO:1900879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of (Z)-nonadeca-1,14-diene biosynthetic process","synonyms":[{"name":"regulation of (Z)-nonadeca-1,14-diene anabolism","type":"exact"},{"name":"regulation of (Z)-nonadeca-1,14-diene biosynthesis","type":"exact"},{"name":"regulation of (Z)-nonadeca-1,14-diene formation","type":"exact"},{"name":"regulation of (Z)-nonadeca-1,14-diene synthesis","type":"exact"}],"termid":"GO:1900941"}


id: GO:0071331
data:
  {"annotated_genes":["SJAG_04312","SJAG_01699","SJAG_04026","SJAG_01754","SJAG_00574","SJAG_01254","SJAG_03081","SJAG_02444","SJAG_00472"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118624,103867,111564,107931,117594,96236,111054,108528,108878],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hexose","termid":"GO:0009746"},{"relation_name":"is_a","term_name":"cellular response to monosaccharide stimulus","termid":"GO:0071326"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to hexose stimulus","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071331","terms_by_termid":{"GO:0010619":null}}


id: PBO:0017910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit Mis13","termid":"PBO:0017910"}


id: MONDO:0013240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any maturity-onset diabetes of the young in which the cause of the disease is a mutation in the INS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity-onset diabetes of the young","termid":"MONDO:0018911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0037792","MONDO:0005066","MONDO:0019254","MONDO:0005015"],"is_obsolete":false,"name":"maturity-onset diabetes of the young type 10","secondary_identifiers":["GARD:15652","DOID:0111108","SCTID:609577006","OMIM:613370","UMLS:C3150617","MEDGEN:461967"],"synonyms":[{"name":"INS maturity-onset diabetes of the young (disease)","type":"exact"},{"name":"MODY10","type":"exact"},{"name":"maturity-onset diabetes of the young (disease) caused by mutation in INS","type":"exact"},{"name":"maturity-onset diabetes of the young, type 10","type":"related"}],"termid":"MONDO:0013240","xrefs":{"Monarch":{"xref_id":"0013240"}}}


id: MONDO:0004078
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intrahepatic cholangiocarcinoma that produces abundant mucin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct mucinous adenocarcinoma","termid":"MONDO:0002739"},{"relation_name":"is_a","term_name":"intrahepatic cholangiocarcinoma","termid":"MONDO:0003210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"mucinous intrahepatic cholangiocarcinoma","secondary_identifiers":["NCIT:C41618","DOID:7024","UMLS:C1513718","MEDGEN:270842"],"synonyms":[{"name":"mucin-producing intrahepatic cholangiocarcinoma","type":"exact"},{"name":"mucinous intrahepatic cholangiocarcinoma","type":"exact"}],"termid":"MONDO:0004078","xrefs":{"Monarch":{"xref_id":"0004078"}}}


id: MONDO:0006187
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that arises from the glandular epithelium of the duodenum. It is characterized by a villous architectural pattern. The neoplastic glandular cells have dysplastic features.","definition_xrefs":["NCIT:C5338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"villous adenoma","termid":"MONDO:0000502"},{"relation_name":"is_a","term_name":"adenoma of small intestine","termid":"MONDO:0021303"},{"relation_name":"is_a","term_name":"tumor of duodenum","termid":"MONDO:0021375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"duodenal villous adenoma","secondary_identifiers":["UMLS:C1333322","MEDGEN:232438","DOID:0050927","EFO:1000225"],"synonyms":[{"name":"duodenal villous adenoma","type":"exact"},{"name":"duodenum adenoma","type":"related"},{"name":"duodenum villous adenoma","type":"exact"},{"name":"villous adenoma of duodenum","type":"exact"},{"name":"villous adenoma of the duodenum","type":"exact"},{"name":"villous adenoma, duodenum","type":"exact"}],"termid":"MONDO:0006187","xrefs":{"Monarch":{"xref_id":"0006187"}}}


id: PBO:0064678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 14","termid":"PBO:0064678"}


id: PBO:0040628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell scaffold protein with ankyrin repeats 1","termid":"PBO:0040628"}


id: GO:0019171
data:
  {"annotated_genes":["SJAG_00305","SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60584,76576],"is_not":false,"summary":null,"term":"GO:0019171"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a (3R)-hydroxyacyl-[acyl-carrier-protein] = a (2E)-enoyl-[acyl-carrier-protein] + H2O.","definition_xrefs":["RHEA:13097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00305":null,"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:3-HYDROXYDECANOYL-ACP-DEHYDR-RXN","EC:4.2.1.59"],"synonyms":[{"name":"(3R)-3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"related"},{"name":"3-hydroxyacyl-ACP dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier protein] dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"broad"}],"termid":"GO:0019171","terms_by_termid":{"GO:0019171":null}}


id: PBO:0046598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 8","termid":"PBO:0046598"}


id: MONDO:0005967
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the spleen with species of mycobacterium.","definition_xrefs":["MESH:D014400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abdominal tuberculosis","termid":"MONDO:0000369"},{"relation_name":"is_a","term_name":"splenic disorder","termid":"MONDO:0002332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"splenic tuberculosis","secondary_identifiers":["ICD9:017.7","MEDGEN:11949","UMLS:C0041331","SCTID:28399005","DOID:9305"],"termid":"MONDO:0005967","xrefs":{"Monarch":{"xref_id":"0005967"}}}


id: PBO:0048894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 14, pseudogene","termid":"PBO:0048894"}


id: MONDO:0007702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Heart-hand syndrome type 3 is a very rare heart-hand syndrome, described in three members of a Spanish family to date, which is characterized by a cardiac conduction defect (sick sinus, bundle-branch block) and brachydactyly, resembling brachydactyly type C of the hands, affecting principally the middle phalanges in conjunction with an extra ossicle on the proximal phalanx of both index fingers. Feet abnormalities are more subtle.","definition_xrefs":["Orphanet:1342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Holt-Oram syndrome","termid":"MONDO:0007732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005267","MONDO:0000426"],"is_obsolete":false,"name":"heart-hand syndrome type 3","secondary_identifiers":["OMIM:140450","SCTID:721013001","UMLS:C1841657","MESH:C535853","MEDGEN:333883","icd11.foundation:1878745129","GARD:2614"],"synonyms":[{"name":"Cardiomelic syndrome type 3","type":"exact"},{"name":"atriodigital dysplasia type 3","type":"exact"},{"name":"brachydactyly and intraventricular conduction defect","type":"related"},{"name":"heart-hand syndrome, Spanish type","type":"exact"},{"name":"heart-limb syndrome type 3","type":"exact"},{"name":"upper limb malformations and congenital cardiac anomalies","type":"related"}],"termid":"MONDO:0007702","xrefs":{"Monarch":{"xref_id":"0007702"}}}


id: PBO:0081341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 141","termid":"PBO:0081341"}


id: MONDO:0008580
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toes, space between first and second","secondary_identifiers":["OMIM:189230","UMLS:C1861058","MEDGEN:348253"],"synonyms":[{"name":"toes, space between first and second","type":"exact"}],"termid":"MONDO:0008580","xrefs":{"Monarch":{"xref_id":"0008580"}}}


id: GO:1902575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any protein localization to cell division site that is involved in cytokinesis, actomyosin contractile ring assembly.","definition_xrefs":["GOC:TermGenie","GOC:al","PMID:24127216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell division site","termid":"GO:0072741"},{"relation_name":"part_of","term_name":"actomyosin contractile ring assembly","termid":"GO:0000915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0044085","GO:0051179","GO:0007010","GO:0007049"],"is_obsolete":false,"name":"protein localization to cell division site involved in cytokinesis, actomyosin contractile ring assembly","synonyms":[{"name":"protein localisation to cell division site involved in constriction ring assembly","type":"narrow"},{"name":"protein localisation to cell division site involved in contractile ring assembly","type":"exact"},{"name":"protein localisation to cell division site involved in cytokinesis, actomyosin contractile ring assembly","type":"exact"},{"name":"protein localisation to cell division site involved in cytokinesis, actomyosin contractile ring formation","type":"related"},{"name":"protein localisation to cell division site involved in cytokinesis, actomyosin ring biosynthesis","type":"related"},{"name":"protein localisation to cell division site involved in cytokinesis, actomyosin ring formation","type":"related"},{"name":"protein localisation to cell division site involved in cytokinesis, contractile ring assembly","type":"related"},{"name":"protein localization to cell division site involved in constriction ring assembly","type":"narrow"},{"name":"protein localization to cell division site involved in contractile ring assembly","type":"exact"},{"name":"protein localization to cell division site involved in cytokinesis, actomyosin contractile ring formation","type":"related"},{"name":"protein localization to cell division site involved in cytokinesis, actomyosin ring biosynthesis","type":"related"},{"name":"protein localization to cell division site involved in cytokinesis, actomyosin ring formation","type":"related"},{"name":"protein localization to cell division site involved in cytokinesis, contractile ring assembly","type":"related"}],"termid":"GO:1902575"}


id: PBO:0049790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 25","termid":"PBO:0049790"}


id: MONDO:1011699
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced glutathione deficiency, non-human animal","secondary_identifiers":["OMIA:001235"],"termid":"MONDO:1011699","xrefs":{"Monarch":{"xref_id":"1011699"}}}


id: PBO:0063130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase family member 15","termid":"PBO:0063130"}


id: GO:1905541
data:
  {"annotated_genes":["SJAG_02605","SJAG_03591","SJAG_00991","SJAG_05346"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112591,93756,95338,100892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-arginine import across plasma membrane.","definition_xrefs":["PMID:14718525","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid import across plasma membrane","termid":"GO:0010958"},{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"regulates","term_name":"L-arginine import across plasma membrane","termid":"GO:0097638"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of L-arginine import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902826","GO:0010963"],"synonyms":[{"name":"regulation of L-arginine import","type":"broad"},{"name":"regulation of L-arginine import into cell","type":"exact"}],"termid":"GO:1905541","terms_by_termid":{"GO:1905589":null}}


id: PBO:0066648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor 2","termid":"PBO:0066648"}


id: MOD:00233
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-lysine residue and 5'-phosphoguanosine through a phosphoramide ester bond to form N6-(phospho-5'-guanosine)-L-lysine.","definition_xrefs":["DeltaMass:304","RESID:AA0228","PubMed:6264433","PubMed:6092377","Unimod:413#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"guanylated residue","termid":"MOD:01163"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-(phospho-5'-guanosine)-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-(5'-guanosine phosphonamino)hexanoic acid","type":"exact"},{"name":"5'-guanylic-N6-L-lysine","type":"exact"},{"name":"5'phos Guanosyl","type":"exact"},{"name":"ACT_SITE N6-GMP-lysine intermediate","type":"exact"},{"name":"L-lysine monoanhydride with 5'-guanylic acid","type":"exact"},{"name":"N(zeta)-5'-guanylic-lysine","type":"exact"},{"name":"N6-(5'-guanylyl)-lysine","type":"exact"},{"name":"N6-(phospho-5'-guanosine)-L-lysine","type":"exact"},{"name":"N6-L-lysine 5'-guanosine phosphoramidester","type":"exact"},{"name":"N6GMPLys","type":"exact"},{"name":"Phosphoguanosine","type":"related"},{"name":"epsilon-5'-guanylic-L-lysine","type":"exact"},{"name":"lysine guanosine-5'-monophosphate","type":"exact"},{"name":"phospho-guanosine","type":"related"}],"termid":"MOD:00233"}


id: PBO:0053233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"luteinizing hormone subunit beta","termid":"PBO:0053233"}


id: GO:0051826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of synapse structural plasticity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of synapse structural plasticity","termid":"GO:0051823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of synapse structural plasticity","synonyms":[{"name":"down regulation of synapse structural plasticity","type":"exact"},{"name":"down-regulation of synapse structural plasticity","type":"exact"},{"name":"downregulation of synapse structural plasticity","type":"exact"},{"name":"inhibition of synapse structural plasticity","type":"narrow"}],"termid":"GO:0051826"}


id: MONDO:0044331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An instance of transient congenital hypothyroidism that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"gene_count":0,"genotype_count":0,"name":"obsolete genetic transient congenital hypothyroidism (obsolete MONDO:0044331)","secondary_identifiers":["Orphanet:226316"],"synonyms":[{"name":"hereditary transient congenital hypothyroidism","type":"exact"}],"termid":"MONDO:0044331","xrefs":{"Monarch":{"xref_id":"0044331"}}}


id: PBO:0048042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrous sheath interacting protein 2 like, pseudogene","termid":"PBO:0048042"}


id: FYPO:0004314
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the CENP-A containing chromatin is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to centromeric chromatin","termid":"FYPO:0005072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to CENP-A containing chromatin","synonyms":[{"name":"normal protein localisation to CENP-A containing chromatin","type":"exact"},{"name":"normal protein localization to CENP-A containing chromatin during mitotic cell cycle","type":"related"},{"name":"normal protein localization to CENP-A containing chromatin during vegetative growth","type":"exact"},{"name":"normal protein localization to centromeric core region chromatin","type":"exact"}],"termid":"FYPO:0004314"}


id: FYPO:0003419
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of malate dehydrogenase (decarboxylating) (NAD+) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal malate dehydrogenase (decarboxylating) (NAD+) activity","termid":"FYPO:0002621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"increased malate dehydrogenase (decarboxylating) (NAD+) activity","synonyms":[{"name":"increased 'malic' enzyme activity","type":"related"},{"name":"increased (S)-malate:NAD+ oxidoreductase (oxaloacetate-decarboxylating) activity","type":"exact"},{"name":"increased NAD-linked malic enzyme activity","type":"related"},{"name":"increased NAD-malic enzyme activity","type":"broad"},{"name":"increased NAD-specific malic enzyme activity","type":"related"},{"name":"increased malate dehydrogenase (oxaloacetate-decarboxylating) activity","type":"exact"}],"termid":"FYPO:0003419"}


id: GO:1990723
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasm situated in close proximity to a nuclear pore complex.","definition_xrefs":["PMID:9398662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"perinuclear region of cytoplasm","termid":"GO:0048471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic periphery of the nuclear pore complex","synonyms":[{"name":"associated with the nuclear pore","type":"related"}],"termid":"GO:1990723"}


id: PBO:0058198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4491","termid":"PBO:0058198"}


id: PBO:0121134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XPOT pseudogene 2","termid":"PBO:0121134"}


id: GO:0047233
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl derivative + UDP-N-acetyl-alpha-D-galactosamine = an N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminyl-(2->3)]-beta-D-galactosyl derivative + UDP + H+.","definition_xrefs":["RHEA:81947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylgalactosaminyltransferase activity","termid":"GO:0008376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"N-acetylneuraminylgalactosylglucosylceramide beta-1,4-N-acetylgalactosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.165-RXN","EC:2.4.1.165"],"synonyms":[{"name":"UDP-N-acetyl-D-galactosamine:N-acetylneuraminyl-2,3-alpha-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,4-N-acetylgalactosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylgalactosamine-acetylneuraminyl(alpha2->3)galactosyl(beta1->4)glucosyl beta1->4-acetylgalactosaminyltransferase activity","type":"related"}],"termid":"GO:0047233"}


id: PBO:0116289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the INO80 chromatin remodeling complex; target of the Mec1p/Tel1p DNA damage signaling pathway; proposed to link chromatin remodeling to replication checkpoint responses","termid":"PBO:0116289"}


id: PBO:0060465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NALF1 intronic transcript 1","termid":"PBO:0060465"}


id: PR:Q9HGP8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC212.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGP8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0494 membrane protein C212.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC212.04c","synonyms":[{"name":"Spom972h-SPAC212.04c","type":"exact"}],"termid":"PR:Q9HGP8"}


id: GO:0008771
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + acetate + (citrate (pro-3S)-lyase) (thiol form) = AMP + diphosphate + (citrate (pro-3S)-lyase) (acetyl form).","definition_xrefs":["EC:6.2.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"[citrate (pro-3S)-lyase] ligase activity","secondary_identifiers":["KEGG_REACTION:R04449","MetaCyc:CITC-RXN","RHEA:23788"],"synonyms":[{"name":"acetate: SH-acyl-carrier-protein enzyme ligase (AMP)","type":"related"},{"name":"acetate:HS-citrate lyase ligase activity","type":"related"},{"name":"acetate:citrate-(pro-3S)-lyase(thiol-form) ligase (AMP-forming)","type":"broad"},{"name":"citrate (pro-3S)-lyase ligase activity","type":"related"},{"name":"citrate lyase ligase activity","type":"related"},{"name":"citrate lyase synthetase activity","type":"related"}],"termid":"GO:0008771"}


id: PBO:0071634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 53","termid":"PBO:0071634"}


id: PBO:0063948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 inhibitor and LY6/PLAUR domain containing","termid":"PBO:0063948"}


id: MONDO:0014923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any peeling skin syndrome in which the cause of the disease is a mutation in the SERPINB8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exfoliative ichthyosis","termid":"MONDO:0017339"},{"relation_name":"is_a","term_name":"peeling skin syndrome","termid":"MONDO:0019347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"peeling skin syndrome 5","secondary_identifiers":["UMLS:C4310710","OMIM:617115","DOID:0070524","GARD:18427","MEDGEN:934677"],"synonyms":[{"name":"PSS5","type":"exact"},{"name":"SERPINB8 peeling skin syndrome","type":"exact"},{"name":"peeling skin syndrome 5","type":"exact"},{"name":"peeling skin syndrome 5; PSS5","type":"exact"},{"name":"peeling skin syndrome caused by mutation in SERPINB8","type":"exact"},{"name":"peeling skin syndrome type 5","type":"exact"}],"termid":"MONDO:0014923","xrefs":{"Monarch":{"xref_id":"0014923"}}}


id: PBO:0113059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of small ribosomal subunit (SSU) processome; interacts with the U3 snoRNA (Snr17a/b); involved in rRNA processing and maturation; required post-transcriptionally for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; originally isolated as bud-site selection mutant that displays a random budding pattern; ortholog of human NOL7","termid":"PBO:0113059"}


id: PBO:0049175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth factor receptor bound protein 10","termid":"PBO:0049175"}


id: GO:0035685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The passage of a helper T cell between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation.","definition_xrefs":["CL:0000912","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diapedesis","termid":"GO:0050904"},{"relation_name":"is_a","term_name":"T cell migration","termid":"GO:0072678"},{"relation_name":"part_of","term_name":"helper T cell extravasation","termid":"GO:0035684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"helper T cell diapedesis","synonyms":[{"name":"T-helper cell diapedesis","type":"exact"},{"name":"helper T-cell diapedesis","type":"exact"}],"termid":"GO:0035685"}


id: PBO:0065406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha 6 pseudogene 2","termid":"PBO:0065406"}


id: PR:P25295
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gtb1 gene.","definition_xrefs":["UniProtKB:P25295","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.04","synonyms":[{"name":"Spom972h-gtb1","type":"exact"},{"name":"gamma-tubulin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P25295"}


id: PR:P17610
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypt3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P17610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18G6.03","synonyms":[{"name":"RAB (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ypt3","type":"exact"}],"termid":"PR:P17610"}


id: PBO:0047060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 120A2, pseudogene","termid":"PBO:0047060"}


id: PBO:0047540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 6","termid":"PBO:0047540"}


id: GO:0018405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Keratan sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and threonine residues.","definition_xrefs":["RESID:AA0247"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-keratan sulfate linkage via keratan sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine (obsolete GO:0018405)","synonyms":[{"name":"protein-keratan sulphate linkage via keratan sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine","type":"exact"}],"termid":"GO:0018405"}


id: MONDO:0859305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with eye movement abnormalities and ataxia","secondary_identifiers":["OMIM:620094","UMLS:C5774241","MEDGEN:1824014","DOID:0081275"],"termid":"MONDO:0859305","xrefs":{"Monarch":{"xref_id":"0859305"}}}


id: PBO:0015264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GalactoMannan Synthesis defective","termid":"PBO:0015264"}


id: SO:0000024
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin.","direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric_RNA_internal_loop","termid":"SO:0000021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcin_like_RNA_motif","synonyms":[{"name":"sarcin like RNA motif","type":"exact"},{"name":"sarcin/ricin RNA domain","type":"exact"},{"name":"sarcin/ricin domain","type":"exact"},{"name":"sarcin/ricin loop","type":"exact"}],"termid":"SO:0000024"}


id: GO:0035922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the foramen ovale closes after birth, to prevent blood flow between the right and left atria. In the fetal heart, the foramen ovale allows blood to enter the left atrium from the right atrium. Closure of the foramen ovale after birth stops this blood flow.","definition_xrefs":["PMID:19762328","GOC:vk","Wikipedia:Foramen_ovale_(heart)","UBERON:0004754","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cardiac septum morphogenesis","termid":"GO:0060411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"foramen ovale closure","synonyms":[{"name":"foramen ovale of heart closure","type":"exact"}],"termid":"GO:0035922"}


id: PBO:0030587
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_valine_level","termid":"PBO:0030587"}


id: PBO:0047447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc gamma receptor IIc (gene/pseudogene)","termid":"PBO:0047447"}


id: GO:0102468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucuronate + wogonin = UDP + wogonin 7-O-beta-D-glucuronate + H+.","definition_xrefs":["RHEA:28322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"wogonin 7-O-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14060"],"termid":"GO:0102468"}


id: PBO:0070843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 22","termid":"PBO:0070843"}


id: GO:0042279
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6 Fe(III)-[cytochrome c] + NH4+ + 2 H2O = 6 Fe(II)-[cytochrome c] + nitrite + 8 H+.","definition_xrefs":["RHEA:13089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor","termid":"GO:0016662"},{"relation_name":"is_a","term_name":"nitrite reductase activity","termid":"GO:0098809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nitrite reductase (cytochrome, ammonia-forming) activity","secondary_identifiers":["EC:1.7.2.2","MetaCyc:1.7.2.2-RXN","Wikipedia:Cytochrome_c_nitrite_reductase"],"synonyms":[{"name":"ammonia:ferricytochrome-c oxidoreductase activity","type":"related"},{"name":"cytochrome c nitrite reductase activity","type":"exact"},{"name":"cytochrome c552 activity","type":"narrow"},{"name":"multiheme nitrite reductase activity","type":"exact"},{"name":"nitrite reductase (cytochrome; ammonia-forming)","type":"related"}],"termid":"GO:0042279"}


id: PBO:0002692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome component beta 6","termid":"PBO:0002692"}


id: PBO:0064660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A like 4C","termid":"PBO:0064660"}


id: PBO:0029708
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_population_growth_at_low_pH","termid":"PBO:0029708"}


id: GO:0036061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a muscle cell towards a tendon cell in response to an external stimulus. Tendon cells, for example, produce positive guidance cues that attract muscle cells.","definition_xrefs":["GOC:sart","PMID:19793885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell migration","termid":"GO:0014812"},{"relation_name":"is_a","term_name":"cell chemotaxis","termid":"GO:0060326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell chemotaxis toward tendon cell","synonyms":[{"name":"muscle cell attraction","type":"related"},{"name":"muscle cell chemotaxis towards tendon cell","type":"exact"}],"termid":"GO:0036061"}


id: FYPO:0007725
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to late endosomes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000138","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to late endosome","synonyms":[{"name":"normal protein localisation to late endosome","type":"exact"},{"name":"normal protein localization to PVE","type":"exact"},{"name":"normal protein localization to late endosome during mitotic cell cycle","type":"related"},{"name":"normal protein localization to late endosome during vegetative growth","type":"exact"},{"name":"normal protein localization to prevacuolar compartment","type":"exact"},{"name":"normal protein localization to prevacuolar endosome","type":"exact"}],"termid":"FYPO:0007725"}


id: PBO:0055131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2550","termid":"PBO:0055131"}


id: GO:0047373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-(4-acetoxybut-1-ynyl)-2,2'-bithiophene + H2O = 5-(4-hydroxy-but-1-ynyl)-2,2'-bithiophene + acetate + H+.","definition_xrefs":["RHEA:11548","EC:3.1.1.54"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"},{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788","GO:0019213"],"is_obsolete":false,"name":"acetoxybutynylbithiophene deacetylase activity","secondary_identifiers":["MetaCyc:3.1.1.54-RXN","KEGG_REACTION:R04490"],"synonyms":[{"name":"5-(4-acetoxy-1-butynyl)-2,2'-bithiophene:acetate esterase activity","type":"related"},{"name":"5-(4-acetoxybut-1-ynyl)-2,2'-bithiophene O-acetylhydrolase activity","type":"related"},{"name":"acetoxybutynylbithiophene esterase activity","type":"related"}],"termid":"GO:0047373"}


id: PBO:0053892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1176","termid":"PBO:0053892"}


id: PBO:0090055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASTRA complex subunit, Armadillo-type fold Tti1","termid":"PBO:0090055"}


id: PBO:0083715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein that promotes export of misfolded polypeptides; required for ER-associated protein degradation of misfolded or unassembled proteins; initiates export of aberrant polypeptides from ER lumen by threading them into ER membrane and routing them to Hrd1p for ubiquitination; function normally requires N-terminal acetylation by NatB; N- and C- termini protrude into cytoplasm; similar to Dfm1p; homolog of mammalian derlin-1","termid":"PBO:0083715"}


id: PBO:0110366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGFR pathway substrate 8, signaling adaptor","termid":"PBO:0110366"}


id: MONDO:0005207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive malignant tumor arising from trophoblastic cells. The vast majority of cases arise in the uterus and represent gestational choriocarcinomas that derive from placental trophoblastic cells. Approximately half of the cases develop from a complete hydatidiform mole. A minority of cases arise in the testis or the ovaries. There is often marked elevation of human chorionic gonadotropin (hCG) in the blood. Choriocarcinomas disseminate rapidly through the hematogenous route; the lungs are most frequently affected.","definition_xrefs":["NCIT:C2948"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"placenta cancer","termid":"MONDO:0002178"},{"relation_name":"excluded_subClassOf","term_name":"adenocarcinoma","termid":"MONDO:0004970"},{"relation_name":"is_a","term_name":"trophoblastic neoplasm","termid":"MONDO:0002872"},{"relation_name":"is_a","term_name":"germ cell tumor","termid":"MONDO:0005040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choriocarcinoma","secondary_identifiers":["HP:0100768","ICDO:9100/3","MEDGEN:40278","NANDO:2200070","ONCOTREE:BCCA","GARD:6059","DOID:3594","EFO:0002893","MESH:D002822","SCTID:188188009","UMLS:C0008497"],"synonyms":[{"name":"chorioblastoma","type":"exact"},{"name":"choriocarcinoma","type":"exact"},{"name":"choriocarcinoma (disease)","type":"exact"},{"name":"choriocarcinoma, malignant","type":"exact"},{"name":"chorioepithelioma","type":"exact"},{"name":"chorion carcinoma","type":"exact"},{"name":"chorionic carcinoma","type":"exact"}],"termid":"MONDO:0005207","xrefs":{"Monarch":{"xref_id":"0005207"}}}


id: PBO:0043351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLPTM1 like","termid":"PBO:0043351"}


id: PBO:0108603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-indirectly_regulates","termid":"PBO:0108603"}


id: PBO:0086105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for assembly of respiratory complex III; mitochondrial inner membrane protein; required for an early step in assembly of respiratory complex III (cytochrome bc1 complex); mRNA is targeted to mitochondria","termid":"PBO:0086105"}


id: MOD:00995
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to (81)Br-L-2'-bromophenylalanine.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-2'-bromophenylalanine","termid":"MOD:00183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(81)Br labeled 2'-bromophenylalanine","termid":"MOD:00995"}


id: PBO:0047008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A11, pseudogene","termid":"PBO:0047008"}


id: GO:0062098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of programmed necrotic cell death.","definition_xrefs":["GOC:rph","GOC:aruk","PMID:27258785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"regulates","term_name":"programmed necrotic cell death","termid":"GO:0097300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of programmed necrotic cell death","termid":"GO:0062098"}


id: FYPO:0007191
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which sites at which the protein Rad52 accumulates remain present for longer than normal.","definition_xrefs":["PMID:31483748","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased duration of Rad52 focus presence during vegetative growth","synonyms":[{"name":"delayed peak level of Rad52 foci during vegetative growth","type":"related"},{"name":"increased duration of Rad22 focus presence during vegetative growth","type":"exact"},{"name":"increased duration of Rad52 focus presence during mitotic cell cycle","type":"related"},{"name":"increased persistence of Rad52 foci during vegetative growth","type":"exact"},{"name":"prolonged Rad52 focus presence during vegetative growth","type":"exact"}],"termid":"FYPO:0007191"}


id: PR:Q10209
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4H3.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized J domain-containing protein C4H3.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.01","synonyms":[{"name":"Spom972h-SPAC4H3.01","type":"exact"}],"termid":"PR:Q10209"}


id: GO:0006055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar biosynthetic process","termid":"GO:0009226"},{"relation_name":"is_a","term_name":"CMP-N-acetylneuraminate metabolic process","termid":"GO:0046381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"CMP-N-acetylneuraminate biosynthetic process","synonyms":[{"name":"CMP-N-acetylneuraminate anabolism","type":"exact"},{"name":"CMP-N-acetylneuraminate biosynthesis","type":"exact"},{"name":"CMP-N-acetylneuraminate formation","type":"exact"},{"name":"CMP-N-acetylneuraminate synthesis","type":"exact"}],"termid":"GO:0006055"}


id: MONDO:0012768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 11","secondary_identifiers":["OMIM:611955","MESH:C567449","MEDGEN:394363","UMLS:C2677773","GARD:15536"],"synonyms":[{"name":"HPC11","type":"exact"},{"name":"prostate cancer, hereditary, 11","type":"exact"}],"termid":"MONDO:0012768","xrefs":{"Monarch":{"xref_id":"0012768"}}}


id: PBO:0053882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1162","termid":"PBO:0053882"}


id: GO:0102529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: apigenin + S-adenosyl-L-methionine = genkwanin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:73071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"apigenin 7-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14661"],"termid":"GO:0102529"}


id: PBO:0056471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine adenosyltransferase 1A","termid":"PBO:0056471"}


id: PBO:0119651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2'',3''-cyclic nucleotide 3'' phosphodiesterase","termid":"PBO:0119651"}


id: PBO:0116301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the TTT complex and the telomere cap complex; subunit of the TTT Hsp90 cochaperone complex that is involved in chromatin remodeling and telomeric chromatin regulation, and  involved in chromatin remodeling and the telomere cap complex; DNA-binding protein specific to single-stranded yeast telomeric DNA repeats; required for telomere length regulation and telomere position effect; involved in the stability or biogenesis of PIKKs such as TORC1","termid":"PBO:0116301"}


id: GO:0018791
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate = CO2 + 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate decarboxylase activity (obsolete GO:0018791)","termid":"GO:0018791"}


id: MONDO:0004491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive malignant tumor arising from trophoblastic cells in the uterus during pregnancy. Approximately half of the cases develop from a complete hydatidiform mole. There is often marked elevation of human chorionic gonadotropin (hCG) in the blood. Choriocarcinomas disseminate rapidly through the hematogenous route; the lungs are most frequently affected.","definition_xrefs":["NCIT:C27246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant germ cell tumor of corpus uteri","termid":"MONDO:0016273"},{"relation_name":"is_a","term_name":"gestational choriocarcinoma","termid":"MONDO:0020550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine corpus choriocarcinoma","secondary_identifiers":["DOID:8188","UMLS:C1336904","DOID:8187","MEDGEN:234466","ONCOTREE:UCCA"],"synonyms":[{"name":"body of uterus choriocarcinoma (disease)","type":"exact"},{"name":"body of uterus gestational choriocarcinoma","type":"exact"},{"name":"choriocarcinoma","type":"related"},{"name":"gestational choriocarcinoma of body of uterus","type":"exact"},{"name":"gestational uterine corpus choriocarcinoma","type":"exact"},{"name":"uterine corpus gestational choriocarcinoma","type":"exact"}],"termid":"MONDO:0004491","xrefs":{"Monarch":{"xref_id":"0004491"}}}


id: PBO:0109385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 16","termid":"PBO:0109385"}


id: MONDO:0000036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemolytic anemia, nonspherocytic (obsolete MONDO:0000036)","termid":"MONDO:0000036","xrefs":{"Monarch":{"xref_id":"0000036"}}}


id: PBO:0075947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 3-like 2 (pseudogene)","termid":"PBO:0075947"}


id: PBO:0088880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anillin-related medial ring protein Mid1","termid":"PBO:0088880"}


id: PBO:0078336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 2-1","termid":"PBO:0078336"}


id: MONDO:0016476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Beckwith-Wiedemann syndrome","termid":"MONDO:0007534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Beckwith-Wiedemann syndrome due to CDKN1C mutation","secondary_identifiers":["Orphanet:231120","UMLS:C5680918","GARD:17160","MEDGEN:1826157"],"termid":"MONDO:0016476","xrefs":{"Monarch":{"xref_id":"0016476"}}}


id: GO:2001195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of lysine biosynthetic process via alpha-aminoadipate and saccharopine.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lysine biosynthetic process via aminoadipic acid","termid":"GO:1902987"},{"relation_name":"is_a","term_name":"regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine","termid":"GO:2001194"},{"relation_name":"negatively_regulates","term_name":"lysine biosynthetic process via alpha-aminoadipate and saccharopine","termid":"GO:0051975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine","synonyms":[{"name":"negative regulation of lysine biosynthesis via aminoadipic acid and saccharopine","type":"exact"},{"name":"negative regulation of lysine biosynthetic process via aminoadipic acid and saccharopine","type":"exact"}],"termid":"GO:2001195"}


id: PBO:0003684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septation protein Uds1","termid":"PBO:0003684"}


id: PBO:0056860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIAT neighbor","termid":"PBO:0056860"}


id: FYPO:0003353
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which DNA double-strand break formation is normal (i.e. indistinguishable from wild type) during gene conversion at the mating-type locus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal DNA double-strand break formation at mating-type locus","synonyms":[{"name":"normal DNA double-strand break formation at mating-type locus during gene conversion","type":"exact"},{"name":"normal DNA double-strand break formation at mating-type locus during mitotic cell cycle","type":"related"},{"name":"normal DNA double-strand break formation at mating-type locus during vegetative growth","type":"exact"},{"name":"normal DNA double-strand break formation during gene conversion at mating-type locus","type":"exact"},{"name":"normal DSB formation at mat1","type":"exact"},{"name":"normal DSB formation at mating-type locus","type":"exact"},{"name":"normal DSB formation proximal to mat1","type":"exact"},{"name":"normal gene conversion at mating-type locus, DNA double-strand break formation","type":"exact"}],"termid":"FYPO:0003353"}


id: GO:1904615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biphenyl stimulus.","definition_xrefs":["PMID:23196670","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to biphenyl","termid":"GO:1904614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to biphenyl","termid":"GO:1904615"}


id: MONDO:0800261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune thyroid disease, susceptibility to, 5","secondary_identifiers":["UMLS:C2748621","MEDGEN:411625"],"synonyms":[{"name":"AITD5","type":"exact"}],"termid":"MONDO:0800261","xrefs":{"Monarch":{"xref_id":"0800261"}}}


id: PBO:0073902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC14A2 antisense RNA 1","termid":"PBO:0073902"}


id: PBO:0067635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 808, pseudogene","termid":"PBO:0067635"}


id: MONDO:0022850
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital sucrose isomaltose malabsorption (obsolete MONDO:0022850)","termid":"MONDO:0022850","xrefs":{"Monarch":{"xref_id":"0022850"}}}


id: PBO:0030363
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_cellular_response_to_hypoxia","termid":"PBO:0030363"}


id: GO:0000472
data:
  {"annotated_genes":["SJAG_00772","SJAG_02250","SJAG_04524","SJAG_04224"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72303,74863,79905,111045],"is_not":false,"summary":null,"term":"GO:0000472"}]},"cv_name":"biological_process","definition":"Endonucleolytic cleavage between the 5'-External Transcribed Spacer (5'-ETS) and the 5' end of the SSU-rRNA of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA.","definition_xrefs":["GOC:curators","PMID:10690410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","termid":"GO:0000479"},{"relation_name":"is_a","term_name":"rRNA 5'-end processing","termid":"GO:0000967"},{"relation_name":"part_of","term_name":"maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","termid":"GO:0000462"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00772":null,"SJAG_02250":null,"SJAG_04224":null,"SJAG_04524":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"endonucleolytic cleavage at A1","type":"narrow"}],"termid":"GO:0000472","terms_by_termid":{"GO:0000472":null}}


id: GO:0002671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell tolerance induction","termid":"GO:0002662"},{"relation_name":"is_a","term_name":"regulation of B cell anergy","termid":"GO:0002670"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte anergy","termid":"GO:0002912"},{"relation_name":"negatively_regulates","term_name":"B cell anergy","termid":"GO:0002515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of B cell anergy","synonyms":[{"name":"down regulation of B cell anergy","type":"exact"},{"name":"down-regulation of B cell anergy","type":"exact"},{"name":"downregulation of B cell anergy","type":"exact"},{"name":"inhibition of B cell anergy","type":"narrow"},{"name":"negative regulation of B lymphocyte anergy","type":"exact"},{"name":"negative regulation of B-cell anergy","type":"exact"},{"name":"negative regulation of B-lymphocyte anergy","type":"exact"}],"termid":"GO:0002671"}


id: PBO:0055382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2812","termid":"PBO:0055382"}


id: MONDO:0001145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"paralytic strabismus","termid":"MONDO:0001143"},{"relation_name":"is_a","term_name":"oculomotor nerve paralysis","termid":"MONDO:0001309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"total third-nerve palsy","secondary_identifiers":["ICD9:378.52","MEDGEN:124396","DOID:10866","UMLS:C0271371","SCTID:194119004"],"synonyms":[{"name":"third nerve palsy with pupil involved","type":"exact"},{"name":"third or oculomotor nerve palsy, total","type":"exact"},{"name":"total third nerve palsy","type":"exact"}],"termid":"MONDO:0001145","xrefs":{"Monarch":{"xref_id":"0001145"}}}


id: MONDO:0030056
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited Fanconi renotubular syndrome","termid":"MONDO:0100238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Fanconi renotubular syndrome 5","secondary_identifiers":["DOID:0080761","OMIM:618913","UMLS:C5394473","GARD:16392","MEDGEN:1711127"],"synonyms":[{"name":"FANCONI RENOTUBULAR SYNDROME 5","type":"exact"},{"name":"FRTS5","type":"exact"},{"name":"Fanconi Renotubular Syndrome, Acadian Variant","type":"exact"},{"name":"Fanconi renotubular syndrome 5","type":"exact"}],"termid":"MONDO:0030056","xrefs":{"Monarch":{"xref_id":"0030056"}}}


id: PBO:0052853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-9","termid":"PBO:0052853"}


id: PR:P87147
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nascent polypeptide-associated complex subunit alpha-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03638","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nascent polypeptide-associated complex subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25H2.05","secondary_identifiers":["UniProtKB:P87147"],"synonyms":[{"name":"NAC-alpha (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NACA2","type":"exact"},{"name":"alpha-NAC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87147"}


id: PBO:0050615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 17-beta dehydrogenase 7 pseudogene 1","termid":"PBO:0050615"}


id: FYPO:0008429
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell that is subject to sulfur starvation is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level","termid":"FYPO:0004083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during cellular response to sulfur starvation","termid":"FYPO:0008429"}


id: PBO:0055691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"liver cell viability associated lncRNA","termid":"PBO:0055691"}


id: PBO:0056270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase alpha class 1A member 1","termid":"PBO:0056270"}


id: PBO:0072853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretion associated Ras related GTPase 1A pseudogene 3","termid":"PBO:0072853"}


id: MONDO:0957593
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 86","secondary_identifiers":["UMLS:C5882755","DOID:0070585","OMIM:620499","MEDGEN:1847370"],"termid":"MONDO:0957593","xrefs":{"Monarch":{"xref_id":"0957593"}}}


id: PBO:0070566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 32","termid":"PBO:0070566"}


id: MONDO:0020693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign form of phosphorylase kinase deficiency caused by variants in PHKA2 or PHKG2 and characterized by hepatomegaly, growth retardation, and mild delay in motor development during childhood.","definition_xrefs":["Orphanet:264580"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic disease","termid":"MONDO:0005066"},{"relation_name":"is_a","term_name":"disorder of glycogen metabolism","termid":"MONDO:0002412"},{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0037792","MONDO:0004335","MONDO:0005066"],"is_obsolete":false,"name":"glycogen storage disease due to liver phosphorylase kinase deficiency","secondary_identifiers":["UMLS:C2012260","GARD:17261","MEDGEN:453209"],"termid":"MONDO:0020693","xrefs":{"Monarch":{"xref_id":"0020693"}}}


id: PBO:0069664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 941, pseudogene","termid":"PBO:0069664"}


id: PBO:0057329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520d","termid":"PBO:0057329"}


id: MONDO:0001004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pneumoconiosis caused by exposure to slate dust.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"slate pneumoconiosis","secondary_identifiers":["DOID:10330","ICD9:502","MEDGEN:83300","NCIT:C35397","SCTID:1259003","UMLS:C0340186"],"synonyms":[{"name":"Schistosis","type":"exact"}],"termid":"MONDO:0001004","xrefs":{"Monarch":{"xref_id":"0001004"}}}


id: FYPO:0006637
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex of one or both cell tips is decreased, and an increased amount of the protein is instead detected distributed throughout the cell cortex.","definition_xrefs":["PomBase:mah","PMID:29930085"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mislocalized protein distributed in cell cortex","termid":"FYPO:0006636"},{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"},{"relation_name":"is_a","term_name":"decreased protein localization to cell tip, with protein distributed in plasma membrane or cortex","termid":"FYPO:0003208"},{"relation_name":"is_a","term_name":"decreased protein localization to cell cortex of cell tip during vegetative growth","termid":"FYPO:0005798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to cell cortex of cell tip, with protein distributed in cortex","synonyms":[{"name":"decreased protein localisation to cell cortex of cell tip, with protein distributed in cortex during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell cortex of cell end, with protein distributed in cortex during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell cortex of cell tip, with protein distributed in cortex, during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to of cell tip cortex, with protein distributed in cortex","type":"exact"},{"name":"reduced protein localization to cell cortex of cell tip, with protein distributed in cortex during vegetative growth","type":"exact"}],"termid":"FYPO:0006637"}


id: PBO:0064565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraoxonase 3","termid":"PBO:0064565"}


id: PBO:0119740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C/D-box small nucleolar RNA snR107","termid":"PBO:0119740"}


id: GO:0000322
data:
  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id: PBO:0077762
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id: PBO:0079424
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id: GO:0019268
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id: RO:0002008
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id: PBO:0089667
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id: GO:0007362
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id: PBO:0050490
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id: PBO:0043213
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id: MONDO:0002292
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id: GO:0031966
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id: PBO:0051497
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id: GO:0051122
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id: MONDO:0003437
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id: PBO:0033748
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id: PBO:0028602
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id: FYECO:0000351
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id: PBO:0063674
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id: FYPO:0003539
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id: GO:1900232
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id: GO:0016447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, as known as immunoglobulin gene segments, within a single locus.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of immune receptors via germline recombination within a single locus","termid":"GO:0002562"},{"relation_name":"is_a","term_name":"somatic diversification of immunoglobulins","termid":"GO:0016445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"somatic recombination of immunoglobulin gene segments","synonyms":[{"name":"somatic recombination of antibody gene segments","type":"exact"}],"termid":"GO:0016447"}


id: PBO:0040986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BOK antisense RNA 1","termid":"PBO:0040986"}


id: PBO:0076780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEA domain transcription factor 3","termid":"PBO:0076780"}


id: MONDO:0005527
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of neurologic disorders caused by damage to the nervous system following exposure to pharmacologic, biologic, and chemical agents. Examples of neurotoxins include chemotherapy agents, radiation treatment, heavy metals, pesticides, and food additives.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toxic encephalopathy","secondary_identifiers":["DOID:3602","ICD9:349.82","MESH:D020258","EFO:0005595","Wikipedia:Toxic_encephalopathy","SCTID:28394000","ICD10WHO:G92","NCIT:C27961","ICD10CM:G92"],"synonyms":[{"name":"neurotoxicity","type":"exact"},{"name":"neurotoxicity syndrome","type":"exact"},{"name":"neurotoxicity syndromes","type":"related"}],"termid":"MONDO:0005527","xrefs":{"Monarch":{"xref_id":"0005527"}}}


id: PBO:0090833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S25","termid":"PBO:0090833"}


id: PBO:0066129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras association domain family member 8","termid":"PBO:0066129"}


id: MONDO:0009290
data:
  {"annotated_genes":["SJAG_02131","SJAG_03824"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87205,87206],"is_not":false,"summary":null,"term":"MONDO:0009290"}]},"cv_name":"mondo","definition":"Glycogen storage disease due to acid maltase deficiency (AMD) is an autosomal recessive trait leading to metabolic myopathy that affects cardiac and respiratory muscles in addition to skeletal muscle and other tissues. AMD represents a wide spectrum of clinical presentations caused by an accumulation of glycogen in lysosomes: Glycogen storage disease due to acid maltase deficiency, infantile onset, non-classic infantile onset and adult onset. Early onset forms are more severe and often fatal.","definition_xrefs":["Orphanet:365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of glycogen metabolism","termid":"MONDO:0002412"},{"relation_name":"is_a","term_name":"familial restrictive cardiomyopathy","termid":"MONDO:0016340"},{"relation_name":"is_a","term_name":"lysosomal glycogen storage disease","termid":"MONDO:0017738"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02131":null,"SJAG_03824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005267","MONDO:0002561","MONDO:0037792"],"is_obsolete":false,"name":"glycogen storage disease II","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200569","UMLS:C0017921","NCIT:C84734","DOID:2752","MedDRA:10053185","NANDO:1200825","NORD:1595","NANDO:1200138","GARD:5714","OMIM:232300","SCTID:274864009","ICD10CM:E74.02","MEDGEN:5340"],"synonyms":[{"name":"Aglucosidase alfa","type":"related"},{"name":"Alpha-1,4-glucosidase acid deficiency","type":"exact"},{"name":"Alpha-1,4-glucosidase deficiency","type":"related"},{"name":"Cardiomegalia Glycogenica diffusa","type":"related"},{"name":"GAA deficiency","type":"related"},{"name":"GAA glycogen storage disease","type":"exact"},{"name":"GSD 2","type":"related"},{"name":"GSD II","type":"related"},{"name":"GSD due to acid maltase deficiency","type":"exact"},{"name":"GSD type 2","type":"exact"},{"name":"GSD type II","type":"exact"},{"name":"GSD2","type":"related"},{"name":"Pompe Disease","type":"exact"},{"name":"Pompe disease","type":"exact"},{"name":"Pompe's disease","type":"exact"},{"name":"acid maltase deficiency","type":"exact"},{"name":"acid maltase deficiency disease","type":"related"},{"name":"deficiency of alpha-glucosidase","type":"related"},{"name":"deficiency of glucoamylase","type":"exact"},{"name":"deficiency of lysosomal alpha-glucosidase","type":"related"},{"name":"deficiency of maltase","type":"exact"},{"name":"generalised glycogenosis","type":"exact"},{"name":"generalized glycogenosis","type":"exact"},{"name":"glucosidase acid-1,4-alpha deficiency","type":"related"},{"name":"glycogen storage disease 2","type":"related"},{"name":"glycogen storage disease II","type":"exact"},{"name":"glycogen storage disease caused by mutation in GAA","type":"exact"},{"name":"glycogen storage disease due to acid maltase deficiency","type":"related"},{"name":"glycogen storage disease type 2","type":"exact"},{"name":"glycogen storage disease type II","type":"exact"},{"name":"glycogen storage disease, type II","type":"exact"},{"name":"glycogenosis due to acid maltase deficiency","type":"exact"},{"name":"glycogenosis type 2","type":"exact"},{"name":"glycogenosis type II","type":"exact"},{"name":"glycogenosis, generalized, Cardiac form","type":"related"},{"name":"glycogenosis, type 2","type":"exact"},{"name":"lysosomal alpha-1,4-glucosidase deficiency","type":"exact"}],"termid":"MONDO:0009290","terms_by_termid":{"MONDO:0009290":null},"xrefs":{"Monarch":{"xref_id":"0009290"}}}


id: PBO:0003008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER unfolded protein response protein (predicted)","termid":"PBO:0003008"}


id: PBO:0017026
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial Microtubule Binder","termid":"PBO:0017026"}


id: MONDO:0012383
data:
  {"annotated_genes":["SJAG_04210"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88604],"is_not":false,"summary":null,"term":"MONDO:0012383"}]},"cv_name":"mondo","definition":"The primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency is characterized by a specific natural-killer (NK) cell deficiency and susceptibility to viral diseases. It has been described in four children from a large inbred kindred. Three out of the four children reported developed a viral illness. The mode of transmission is most likely autosomal recessive. The causative gene has been localized to within a 12-Mb region on chromosome 8p11.23-q11.21.","definition_xrefs":["Orphanet:75391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04210":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111967","NANDO:2200771","MEDGEN:351256","MESH:C566492","OMIM:609981","NCIT:C123729","SCTID:724275005","UMLS:C1864947","GARD:16695"],"synonyms":[{"name":"IMD54","type":"related"},{"name":"NKGCD","type":"related"},{"name":"immunodeficiency 54","type":"related"},{"name":"mini-chromosome maintenance 4","type":"exact"},{"name":"natural KILLER cell and glucocorticoid deficiency with DNA repair defect","type":"related"},{"name":"natural Killer cell deficiency, familial isolated","type":"related"},{"name":"primary immunodeficiency due to MCM4 deficiency","type":"exact"}],"termid":"MONDO:0012383","terms_by_termid":{"MONDO:0012383":null},"xrefs":{"Monarch":{"xref_id":"0012383"}}}


id: PBO:0064446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POC5 centriolar protein","termid":"PBO:0064446"}


id: FYPO:0000672
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular physical quality phenotype","termid":"FYPO:0007723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal cell morphology","synonyms":[{"name":"cellular morphology: normal","type":"related"}],"termid":"FYPO:0000672"}


id: GO:0001565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a phorbol ester and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:ai","PMID:10506570","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"phorbol ester receptor activity","termid":"GO:0001565"}


id: PBO:0065440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 13","termid":"PBO:0065440"}


id: MONDO:0019500
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Extragonadal teratoma is an extremely rare, benign or malignant germ cell tumor characterized, clinically, by a teratoma presenting in an extragonadal location (e.g. retroperitoneum, mediastinum, craniofacial or sacrococcygeal region, intraosseous, solid organs) and, histologically, by displaying well-differentiated structures, as well as immature elements. Presenting symptoms are variable depending on size and location of tumor.","definition_xrefs":["Orphanet:883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extragonadal non-dysgerminomatous germ cell tumor","termid":"MONDO:0020539"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extragonadal teratoma","secondary_identifiers":["SCTID:768937006","UMLS:C4708601","GARD:18711","MEDGEN:1646497","MedDRA:10043276","MESH:D013724","NCIT:C189045"],"termid":"MONDO:0019500","xrefs":{"Monarch":{"xref_id":"0019500"}}}


id: GO:0046711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of GDP, guanosine 5'-diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate biosynthetic process","termid":"GO:0009180"},{"relation_name":"is_a","term_name":"GDP metabolic process","termid":"GO:0046710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"GDP biosynthetic process","synonyms":[{"name":"GDP anabolism","type":"exact"},{"name":"GDP biosynthesis","type":"exact"},{"name":"GDP formation","type":"exact"},{"name":"GDP synthesis","type":"exact"}],"termid":"GO:0046711"}


id: PR:Q9Y822
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl16 gene.","definition_xrefs":["UniProtKB:Q9Y822","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L16, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.03c","synonyms":[{"name":"Spom972h-mrpl16","type":"exact"}],"termid":"PR:Q9Y822"}


id: PR:Q09752
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fnx1 gene.","definition_xrefs":["UniProtKB:Q09752","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multidrug resistance protein fnx1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.13c","synonyms":[{"name":"Spom972h-fnx1","type":"exact"}],"termid":"PR:Q09752"}


id: GO:0075119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host G protein-coupled receptor signal transduction (obsolete GO:0075119)","synonyms":[{"name":"positive regulation by symbiont of host G protein-coupled receptor signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host G-protein coupled receptor protein signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein alpha subunit","type":"narrow"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein beta subunit","type":"narrow"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein gamma subunit","type":"narrow"}],"termid":"GO:0075119"}


id: MONDO:0044766
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Marfan Syndrome 3 (obsolete MONDO:0044766)","secondary_identifiers":["GTR:AN0100577","GTR:AN0100578"],"synonyms":[{"name":"MFS 3","type":"related"},{"name":"Marfan syndrome type 3","type":"related"}],"termid":"MONDO:0044766","xrefs":{"Monarch":{"xref_id":"0044766"}}}


id: PBO:0090240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER stress associated protein Tam14","termid":"PBO:0090240"}


id: GO:1901845
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell communication by electrical coupling involved in cardiac conduction.","definition_xrefs":["GOC:rl","GOC:BHF","GOC:TermGenie","PMID:17130302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell communication by electrical coupling","termid":"GO:0010651"},{"relation_name":"is_a","term_name":"regulation of cell communication by electrical coupling involved in cardiac conduction","termid":"GO:1901844"},{"relation_name":"negatively_regulates","term_name":"cell communication by electrical coupling involved in cardiac conduction","termid":"GO:0086064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell communication by electrical coupling involved in cardiac conduction","synonyms":[{"name":"down regulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"},{"name":"down-regulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"},{"name":"downregulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"},{"name":"inhibition of cell communication by electrical coupling involved in cardiac conduction","type":"narrow"}],"termid":"GO:1901845"}


id: PBO:0085525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S26, no bacterial homolog; RPS26A has a paralog, RPS26B, that arose from the whole genome duplication; human homolog can partially complement an RPS26A, RPS26B double null mutant; mutations in the human gene are associated with Diamond-Blackfan anemia","termid":"PBO:0085525"}


id: MONDO:0008361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radius, aplasia of, with cleft lip/palate","secondary_identifiers":["OMIM:179400","UMLS:C1867395","MEDGEN:357270"],"synonyms":[{"name":"radius, aplasia of, with cleft lip/palate","type":"exact"}],"termid":"MONDO:0008361","xrefs":{"Monarch":{"xref_id":"0008361"}}}


id: GO:0017124
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.","definition_xrefs":["GOC:go_curators","Pfam:PF00018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"SH3 domain binding","termid":"GO:0017124"}


id: PBO:0006191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_exists_during","termid":"PBO:0006191"}


id: SO:0001714
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated.","direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2BK5_monomethylation_site","synonyms":[{"name":"H2BK5 mono-methylation site","type":"exact"}],"termid":"SO:0001714"}


id: PBO:0077990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transformer 2 beta homolog","termid":"PBO:0077990"}


id: MONDO:0800175
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, cardiac condition characterized by severely decreased cardiac output, hypoperfusion and end-organ dysfunction, in the presence of adequate intravascular volume. The clinical presentation is variable and may range from subtle hemodynamic alterations to overt cardiovascular collapse. Commonly reported features include dyspnea, crackles, elevated jugular venous pressure, altered mental state, abnormal pulse pressure, oliguria, cold extremities, and increased serum lactate levels.","definition_xrefs":["Orphanet:97292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiogenic shock","secondary_identifiers":["MEDGEN:48650","icd11.foundation:1974956233","ICD10CM:R57.0","GARD:19362","MedDRA:10007625","UMLS:C0036980"],"termid":"MONDO:0800175","xrefs":{"Monarch":{"xref_id":"0800175"}}}


id: SO:1000008
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence.","definition_xrefs":["SO:immuno_workshop"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNV","termid":"SO:0001483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"point_mutation","secondary_identifiers":["http://en.wikipedia.org/wiki/Point_mutation"],"synonyms":[{"name":"point mutation","type":"exact"}],"termid":"SO:1000008"}


id: PBO:0045100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMAC1 pseudogene 1","termid":"PBO:0045100"}


id: GO:1902034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic stem cell proliferation.","definition_xrefs":["GOC:TermGenie","PMID:23403623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hematopoietic stem cell proliferation","termid":"GO:1902033"},{"relation_name":"is_a","term_name":"negative regulation of hemopoiesis","termid":"GO:1903707"},{"relation_name":"is_a","term_name":"negative regulation of stem cell proliferation","termid":"GO:2000647"},{"relation_name":"negatively_regulates","term_name":"hematopoietic stem cell proliferation","termid":"GO:0071425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hematopoietic stem cell proliferation","synonyms":[{"name":"down regulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"down regulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"down-regulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"down-regulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"downregulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"downregulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"inhibition of hematopoietic stem cell proliferation","type":"narrow"},{"name":"inhibition of hemopoietic stem cell proliferation","type":"narrow"},{"name":"negative regulation of hemopoietic stem cell proliferation","type":"exact"}],"termid":"GO:1902034"}


id: PBO:0047326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAU pseudogene 4","termid":"PBO:0047326"}


id: GO:0034320
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: hexanoyl-CoA + an alcohol = CoA + a hexyl ester.","definition_xrefs":["PMID:16361250","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete alcohol O-hexanoyltransferase activity (obsolete GO:0034320)","termid":"GO:0034320"}


id: GO:0048662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["CL:0000192","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell proliferation","synonyms":[{"name":"down regulation of smooth muscle cell proliferation","type":"exact"},{"name":"down-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"downregulation of smooth muscle cell proliferation","type":"exact"},{"name":"inhibition of smooth muscle cell proliferation","type":"narrow"},{"name":"negative regulation of SMC proliferation","type":"exact"}],"termid":"GO:0048662"}


id: GO:1902813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry.","definition_xrefs":["GOC:mr","PMID:10499580","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry (obsolete GO:1902813)","synonyms":[{"name":"down regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"down regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination","type":"exact"},{"name":"down regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"down-regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"down-regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination","type":"exact"},{"name":"down-regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"downregulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"downregulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination","type":"exact"},{"name":"downregulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"inhibition of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"narrow"},{"name":"inhibition of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination","type":"narrow"},{"name":"inhibition of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"narrow"},{"name":"negative regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination","type":"exact"},{"name":"negative regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"}],"termid":"GO:1902813"}


id: PBO:0073860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member A8","termid":"PBO:0073860"}


id: GO:0075522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Process by which viral mRNA translation is initiated, where a domain in the 5' untranslated region (UTR) of the viral mRNA called an internal ribosome entry site (IRES) binds the host 43S preinitiation complex, circumventing regular cap-dependent translation initiation.","definition_xrefs":["GOC:jl","PMID:19632368","VZ:867","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral translation","termid":"GO:0019081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"IRES-dependent viral translational initiation","termid":"GO:0075522"}


id: PBO:0053382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 309","termid":"PBO:0053382"}


id: MONDO:0017693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glycogen storage disease due to glycogen synthase deficiency (obsolete MONDO:0017693)","secondary_identifiers":["Orphanet:308520","NANDO:1200824"],"synonyms":[{"name":"GSD due to glycogen synthase deficiency","type":"exact"},{"name":"GSD0","type":"exact"},{"name":"glycogen storage disease type 0","type":"exact"},{"name":"glycogenosis due to glycogen synthase deficiency","type":"exact"}],"termid":"MONDO:0017693","xrefs":{"Monarch":{"xref_id":"0017693"}}}


id: MONDO:0016257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adenosarcoma of the corpus uteri (obsolete MONDO:0016257)","termid":"MONDO:0016257","xrefs":{"Monarch":{"xref_id":"0016257"}}}


id: PR:Q10478
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sorting and assembly machinery component 50 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01861","PANTHER:PTHR12815:SF6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAM50-like protein SPAC17C9.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.06","secondary_identifiers":["UniProtKB:Q10478"],"synonyms":[{"name":"Spom972h-SAMM50","type":"exact"}],"termid":"PR:Q10478"}


id: PBO:0076218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phase upregulated non-coding 1","termid":"PBO:0076218"}


id: MONDO:0000883
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myeloid neoplasms associated with PDGFRB rearrangement (obsolete MONDO:0000883)","termid":"MONDO:0000883","xrefs":{"Monarch":{"xref_id":"0000883"}}}


id: GO:0102292
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 30-hydroxy-beta-amyrin + O2 + NADPH + H+ = 11alpha,30-dihydroxy-beta-amyrin + H2O + NADP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 30-hydroxy-beta-amyrin 11-hydroxylase activity (obsolete GO:0102292)","termid":"GO:0102292"}


id: GO:0004334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-fumarylacetoacetate + H2O = acetoacetate + fumarate + H+.","definition_xrefs":["EC:3.7.1.2","RHEA:10244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"fumarylacetoacetase activity","secondary_identifiers":["Reactome:R-HSA-71181","KEGG_REACTION:R01364","MetaCyc:FUMARYLACETOACETASE-RXN","UM-BBD_reactionID:r0107"],"synonyms":[{"name":"4-fumarylacetoacetate fumarylhydrolase activity","type":"related"},{"name":"beta-diketonase activity","type":"related"},{"name":"fumarylacetoacetate hydrolase activity","type":"related"}],"termid":"GO:0004334"}


id: PBO:0054514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1914","termid":"PBO:0054514"}


id: FYPO:0002595
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone phosphorylation is normal. All histone phosphorylation may be assayed, or phosphorylation of specific sites on specific histones may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone modification during vegetative growth","termid":"FYPO:0002600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal histone phosphorylation during vegetative growth","synonyms":[{"name":"normal histone phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002595"}


id: GO:1990501
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Component of the core exon-exon-junction complex (EJC). Fairly conserved in eukaryotes; in Drosophila, consists of the Mago and Y14 (tsunagi) gene products. Important for coupling nuclear and cytoplasmic events in gene expression. Inhibits the ATPase activity of eIF4AIII (Q9VHS8) to ensure a stable association of the EJC core with the mRNA.","definition_xrefs":["PMID:12730685","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exon-exon junction complex","termid":"GO:0035145"},{"relation_name":"is_a","term_name":"ATPase inhibitor complex","termid":"GO:1903503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"exon-exon junction subcomplex mago-y14","synonyms":[{"name":"MGN-RBM8A complex","type":"exact"},{"name":"exon junction subcomplex MAGOH-Y14","type":"exact"},{"name":"mago-y14 complex","type":"related"}],"termid":"GO:1990501"}


id: FYPO:0007675
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing sucrose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002058","FYPO:0000003","FYPO:0002057","FYPO:0002060","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"abolished cell population growth on sucrose carbon source","synonyms":[{"name":"abolished growth on sucrose carbon source","type":"broad"},{"name":"abolished sucrose utilization","type":"related"},{"name":"abolished vegetative cell population growth on sucrose carbon source","type":"exact"},{"name":"cell population growth on sucrose carbon source abolished","type":"exact"}],"termid":"FYPO:0007675"}


id: PBO:0005444
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.3.2.10","termid":"PBO:0005444"}


id: PBO:0027668
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-short_cytoplasmic_microtubules_present_in_increased_numbers","termid":"PBO:0027668"}


id: PBO:0028371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_GT_repeat_stability","termid":"PBO:0028371"}


id: MOD:01922
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to 3-methoxydehydroalanine.","definition_xrefs":["PubMed:19745839","RESID:AA0582"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"dehydroalanine (Ser)","termid":"MOD:00189"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methoxydehydroalanine","synonyms":[{"name":"2-amino-3-methoxyprop-2-enoic acid","type":"exact"},{"name":"3-methoxydehydroalanine","type":"exact"},{"name":"3-methoxydidehydroalanine","type":"exact"}],"termid":"MOD:01922"}


id: GO:0042571
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"immunoglobulin complex, circulating","secondary_identifiers":["Wikipedia:Antibody"],"synonyms":[{"name":"antibody","type":"exact"}],"termid":"GO:0042571"}


id: GO:0071064
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaE-beta7 integrin complex bound to E-cadherin.","definition_xrefs":["PMID:10837471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alphaE-beta7 integrin-E-cadherin complex","synonyms":[{"name":"ITGAE-ITGB7-CDH1 complex","type":"narrow"}],"termid":"GO:0071064"}


id: PBO:0068517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 109, pseudogene","termid":"PBO:0068517"}


id: PBO:0002523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase (predicted)","termid":"PBO:0002523"}


id: GO:0097213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the lysosomal membrane.","definition_xrefs":["GOC:yaf","PMID:20544854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane permeability","termid":"GO:0090559"},{"relation_name":"is_a","term_name":"lysosomal membrane organization","termid":"GO:0097212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of lysosomal membrane permeability","synonyms":[{"name":"regulation of lysosome membrane permeability","type":"exact"}],"termid":"GO:0097213"}


id: PBO:0034647
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_bleomycin","termid":"PBO:0034647"}


id: PBO:0001856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aconitate hydratase (predicted)","termid":"PBO:0001856"}


id: PBO:0066080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 2 pseudogene 8","termid":"PBO:0066080"}


id: GO:1903576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-arginine stimulus.","definition_xrefs":["GOC:TermGenie","PMID:6394628","GOC:mr","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-arginine","termid":"GO:1903576"}


id: MONDO:0000614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete estrogen-receptor negative breast cancer (obsolete MONDO:0000614)","termid":"MONDO:0000614","xrefs":{"Monarch":{"xref_id":"0000614"}}}


id: PBO:0054266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1651","termid":"PBO:0054266"}


id: MOD:00754
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a bromine atom for a hydrogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogen containing residue","termid":"MOD:00694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brominated residue","synonyms":[{"name":"BrRes","type":"exact"}],"termid":"MOD:00754"}


id: GO:0035448
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:bf","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of membrane","termid":"GO:0019898"},{"relation_name":"part_of","term_name":"thylakoid membrane","termid":"GO:0042651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of thylakoid membrane","synonyms":[{"name":"extrinsic to thylakoid membrane","type":"narrow"},{"name":"peripheral to thylakoid membrane","type":"exact"}],"termid":"GO:0035448"}


id: GO:1905567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport.","definition_xrefs":["GOC:nc","GO_REF:0000058","PMID:22848640","GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport (obsolete GO:1905567)","synonyms":[{"name":"activation of receptor-mediated endocytosis of LDL","type":"narrow"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"narrow"},{"name":"positive regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"positive regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"},{"name":"up-regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"},{"name":"upregulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"}],"termid":"GO:1905567"}


id: GO:0070126
data:
  {"annotated_genes":["SJAG_05221","SJAG_03232","SJAG_00286","SJAG_00308","SJAG_01518"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97513,97950,100662,104088,106727],"is_not":false,"summary":null,"term":"GO:0070126"}]},"cv_name":"biological_process","definition":"The process resulting in the release of a polypeptide chain from the ribosome in a mitochondrion, usually in response to a termination codon (note that mitochondria use variants of the universal genetic code that differ between different taxa).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational termination","termid":"GO:0006415"},{"relation_name":"part_of","term_name":"mitochondrial translation","termid":"GO:0032543"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00286":null,"SJAG_00308":null,"SJAG_01518":null,"SJAG_03232":null,"SJAG_05221":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140053","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mitochondrial translational termination","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5419276"],"synonyms":[{"name":"mitochondrial translation termination","type":"exact"}],"termid":"GO:0070126","terms_by_termid":{"GO:0070126":null}}


id: PBO:0120990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MGRN1 antisense RNA 1","termid":"PBO:0120990"}


id: PR:Q09836
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ATPase complex subunit atp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G8.11c","synonyms":[{"name":"Spom972h-atp10","type":"exact"}],"termid":"PR:Q09836"}


id: PBO:0083765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential membrane protein localized at nuclear envelope and SPBs; required for insertion of the newly duplicated spindle pole body into the nuclear envelope; potentially phosphorylated by Cdc28p; MPS2 has a paralog, CSM4, that arose from the whole genome duplication","termid":"PBO:0083765"}


id: PBO:0089320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3, implicated in negative regulation of ubiquitinated chromatin formation","termid":"PBO:0089320"}


id: GO:1901529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anion channel activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anion channel activity","termid":"GO:0010359"},{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of anion transmembrane transport","termid":"GO:1903961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of anion channel activity","synonyms":[{"name":"activation of anion channel activity","type":"narrow"},{"name":"up regulation of anion channel activity","type":"exact"},{"name":"up-regulation of anion channel activity","type":"exact"},{"name":"upregulation of anion channel activity","type":"exact"}],"termid":"GO:1901529"}


id: GO:1990499
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex required for the asymmetric division of neuroblasts in Drosophila. Coordinates asymmetric localization of cell fate determinants with orientation of the mitotic spindle resulting in different daughter cells upon division. Localizes at the apical cortex of the neuroblast: Raps maintains, but does not initiate, Insc apically, while Insc segregates Raps asymmetrically. Complex appears to be conserved in mammals (composed of INSC and GPSM1 or GPSM2).","definition_xrefs":["PMID:22171003","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"apical cortex","termid":"GO:0045179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005938","GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"raps-insc complex","synonyms":[{"name":"Rapsynoid-Inscuteable complex","type":"exact"},{"name":"partner of inscuteable-inscuteable complex","type":"exact"}],"termid":"GO:1990499"}


id: GO:0008784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine = D-alanine.","definition_xrefs":["EC:5.1.1.1","RHEA:20249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"alanine racemase activity","secondary_identifiers":["MetaCyc:ALARACECAT-RXN","KEGG_REACTION:R00401"],"synonyms":[{"name":"L-alanine racemase activity","type":"related"}],"termid":"GO:0008784"}


id: MONDO:0000752
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myelomeningocele (obsolete MONDO:0000752)","termid":"MONDO:0000752","xrefs":{"Monarch":{"xref_id":"0000752"}}}


id: PBO:0061860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligodendrocyte transcription factor 1","termid":"PBO:0061860"}


id: PBO:0049230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRM3 antisense RNA 1","termid":"PBO:0049230"}


id: PBO:0047543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 7 pseudogene 2","termid":"PBO:0047543"}


id: GO:0044147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of formation of structure involved in a symbiotic process","termid":"GO:0044145"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"formation of structure involved in a symbiotic process","termid":"GO:0044111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of formation of structure involved in a symbiotic process","synonyms":[{"name":"negative regulation of development of symbiont during interaction with host","type":"related"},{"name":"negative regulation of development of symbiont involved in interaction with host","type":"related"}],"termid":"GO:0044147"}


id: GO:0035399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Positive regulation of a B cell mediated immune response mediated via cytokine production by a helper T cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of B cell mediated immunity","termid":"GO:0002714"},{"relation_name":"is_a","term_name":"helper T cell enhancement of adaptive immune response","termid":"GO:0035397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"helper T cell enhancement of B cell mediated immune response","synonyms":[{"name":"helper T cell enhancement of B cell mediated immunity","type":"exact"},{"name":"provision of T cell help to B cell","type":"exact"}],"termid":"GO:0035399"}


id: FYPO:0004564
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha-galactosidase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal alpha-galactosidase activity","termid":"FYPO:0004563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"increased alpha-galactosidase activity","termid":"FYPO:0004564"}


id: GO:0052636
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an arabinosyl group from one compound (donor) to another (acceptor).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"arabinosyltransferase activity","synonyms":[{"name":"arabinosyl transferase activity","type":"exact"}],"termid":"GO:0052636"}


id: PBO:0081331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 132","termid":"PBO:0081331"}


id: GO:2000887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a glucuronoarabinoxylan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronoxylan catabolic process","termid":"GO:2000886"},{"relation_name":"is_a","term_name":"arabinoxylan-containing compound catabolic process","termid":"GO:2000888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"glucuronoarabinoxylan catabolic process","synonyms":[{"name":"glucuronoarabinoxylan catabolism","type":"exact"}],"termid":"GO:2000887"}


id: PBO:0068704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 85, pseudogene","termid":"PBO:0068704"}


id: PBO:0035887
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_acetylation_during_vegetative_growth","termid":"PBO:0035887"}


id: FYECO:0000424
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which amorolfine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ amorolfine","synonyms":[{"name":"+ amorolfine","type":"exact"}],"termid":"FYECO:0000424"}


id: PBO:0059191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRGPRF antisense RNA 1","termid":"PBO:0059191"}


id: PBO:0060322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IB","termid":"PBO:0060322"}


id: PBO:0029808
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_abnormal_cell_shape,_normal_cell_size","termid":"PBO:0029808"}


id: PBO:0116407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar/ prevavuolar endosome sodium/potassium ion/proton antiporter Nhx1","termid":"PBO:0116407"}


id: PR:000045542
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cyclin-dependent kinase 1 (Schizosaccharomyces pombe) that has been phosphorylated on a Thr residue (Thr-167) within the T-Loop, and Thr-14 and Tyr-15 within the ATP binding region. UniProtKB:P04551, Thr-14/Thr-167, MOD:00047|Tyr-15, MOD:00048.","definition_xrefs":["PRO:CNA","PomBase:MAH","PMID:26131711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent kinase 1 (Schizosaccharomyces pombe)","termid":"PR:000036301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc2/Phos:(T14,Y15,T167)","pombase_gene_id":"SPBC11B10.09","synonyms":[{"name":"Cdc2 phosphorylated 3","type":"related"},{"name":"Cdc2-Hf","type":"exact"},{"name":"PomBase_original_PRO_term_name: cyclin-dependent kinase 1 phosphorylated 3 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc2/Phos:3","type":"exact"},{"name":"UniProtKB:P04551, Thr-14/Thr-167, MOD:00047|Tyr-15, MOD:00048","type":"exact"},{"name":"cdc2/Phos:(T14,Y15,T167)","type":"exact"}],"termid":"PR:000045542"}


id: PATO:0001168
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"damage","termid":"PATO:0001020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"undamaged","termid":"PATO:0001168"}


id: GO:1901283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 5,6,7,8-tetrahydromethanopterin.","definition_xrefs":["UniPathway:UPA00065","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"},{"relation_name":"is_a","term_name":"tetrahydromethanopterin metabolic process","termid":"GO:2001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"5,6,7,8-tetrahydromethanopterin metabolic process","synonyms":[{"name":"5,6,7,8-tetrahydromethanopterin metabolism","type":"exact"}],"termid":"GO:1901283"}


id: PBO:0087322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Snf2p family member with ATP-dependent chromatin remodeling activity; has a role in silencing at the mating type locus, telomeres and centromeres; enriched at centromeres and is required for correct chromatin structure around centromeres, as well as at the boundary element of the silent HMR; recruited to DNA double-strand breaks (DSBs) where it promotes 5' strand resection of DSBs; potential Cdc28p substrate","termid":"PBO:0087322"}


id: FYPO:0004183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing papuamide B when cells in the population are undergoing conjugation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell population growth","termid":"FYPO:0000047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on papuamide B during mating","synonyms":[{"name":"normal cell population growth in presence of papuamide B during mating","type":"exact"},{"name":"normal cell population growth on papuamide B during mating","type":"exact"},{"name":"normal cellular response to papuamide B during mating","type":"related"},{"name":"normal growth on papuamide B during conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004183"}


id: PBO:0050765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 27","termid":"PBO:0050765"}


id: PBO:0018288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit Tho7 (predicted)","termid":"PBO:0018288"}


id: PR:O60166
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nud3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear movement protein nudc (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F8.02","synonyms":[{"name":"Spom972h-nud3","type":"exact"},{"name":"nuclear distribution protein C homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60166"}


id: PBO:0017541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron ion transmembrane transporter (predicted)","termid":"PBO:0017541"}


id: PBO:0068977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 221, pseudogene","termid":"PBO:0068977"}


id: PBO:0027601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_actomyosin_contractile_ring_morphology","termid":"PBO:0027601"}


id: FYPO:0007287
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the galactosylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal. Protein galactosylation is the addition of a galactose residue to a protein amino acid.","definition_xrefs":["PomBase:mah","GO:0042125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein glycosylation during vegetative growth","termid":"FYPO:0001911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein galactosylation during vegetative growth","synonyms":[{"name":"decreased protein galactosylation during mitotic cell cycle","type":"related"},{"name":"reduced protein galactosylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007287"}


id: PR:Q92368
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell differentiation protein RCD1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12262:SF0","PRO:DNx","OMA:SCHPO02251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell differentiation protein rcd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.06c","secondary_identifiers":["UniProtKB:Q92368"],"synonyms":[{"name":"Spom972h-RQCD1","type":"exact"}],"termid":"PR:Q92368"}


id: PBO:0053457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 410","termid":"PBO:0053457"}


id: PBO:0007604
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during meiosis I","termid":"PBO:0007604"}


id: PBO:0055265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2692","termid":"PBO:0055265"}


id: FYPO:0004658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, and has two nuclei and more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"binucleate multiseptate vegetative cell","termid":"FYPO:0001223"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000032"],"is_obsolete":false,"name":"inviable binucleate multiseptate vegetative cell","synonyms":[{"name":"inviable binucleate multiseptate cell during vegetative growth","type":"exact"},{"name":"inviable binucleate multiseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; binucleate multiseptate vegetative cell","type":"exact"}],"termid":"FYPO:0004658"}


id: MONDO:0007653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genochondromatosis","secondary_identifiers":["icd11.foundation:1222756922","OMIM:137360","UMLS:C1300229","MEDGEN:224887","MESH:C563215","SCTID:389264005","GARD:10621"],"synonyms":[{"name":"genochondromatosis","type":"exact"}],"termid":"MONDO:0007653","xrefs":{"Monarch":{"xref_id":"0007653"}}}


id: PBO:0051012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor 2","termid":"PBO:0051012"}


id: PBO:0117025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA osteoblastogenesis associated 1","termid":"PBO:0117025"}


id: PBO:0038967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADNP homeobox 2","termid":"PBO:0038967"}


id: FYPO:0008064
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is lower than normal after phosphate removal.","definition_xrefs":["PMID:36779416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mating efficiency","termid":"FYPO:0000708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency during phosphate starvation","termid":"FYPO:0008064"}


id: GO:1901212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac chamber formation.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac chamber formation","termid":"GO:1901210"},{"relation_name":"is_a","term_name":"positive regulation of cardiac chamber morphogenesis","termid":"GO:1901221"},{"relation_name":"positively_regulates","term_name":"cardiac chamber formation","termid":"GO:0003207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac chamber formation","synonyms":[{"name":"activation of cardiac chamber formation","type":"narrow"},{"name":"activation of heart chamber formation","type":"exact"},{"name":"positive regulation of heart chamber formation","type":"exact"},{"name":"up regulation of cardiac chamber formation","type":"exact"},{"name":"up regulation of heart chamber formation","type":"exact"},{"name":"up-regulation of cardiac chamber formation","type":"exact"},{"name":"up-regulation of heart chamber formation","type":"exact"},{"name":"upregulation of cardiac chamber formation","type":"exact"},{"name":"upregulation of heart chamber formation","type":"exact"}],"termid":"GO:1901212"}


id: FYPO:0000191
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of the establishment or maintenance of cell polarity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal regulation of establishment or maintenance of cell polarity","synonyms":[{"name":"abnormal regulation of establishment or maintenance of cell polarity during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of establishment or maintenance of cell polarity during vegetative growth","type":"exact"}],"termid":"FYPO:0000191"}


id: GO:0061127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-1. DIF-1 is a chlorinated alkylphenone.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of positive chemotaxis to cAMP by DIF-1","termid":"GO:0061120"},{"relation_name":"is_a","term_name":"negative regulation of positive chemotaxis to cAMP by chlorinated alkylphenone","termid":"GO:0061125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of positive chemotaxis to cAMP by DIF-1","termid":"GO:0061127"}


id: PBO:0017015
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Orc4 binding footprint at replication origins is extended in G1 in the presence of Cdc1 and the MCM complex","termid":"PBO:0017015"}


id: PBO:0077461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 184C","termid":"PBO:0077461"}


id: GO:0030944
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a KDEL sequence, the C terminus tetrapeptide sequence Asp-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ER retention sequence binding","termid":"GO:0046923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005048"}],"interesting_parent_ids":["GO:0005048","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"DDEL sequence binding","termid":"GO:0030944"}


id: PBO:0112977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"14-3-3 protein, minor isoform; involved in post-transcriptional control of the proteome; binds to both proteins and to DNA, including replication origins; regulates multiple processes including exocytosis, vesicle transport, Ras/MAPK and rapamycin-sensitive signaling and meiotic commitment; protein abundance and relative distribution to the nucleus increase upon DNA replication stress; abundance relative to Bmh1p increases during sporulation; similar to several human 14-3-3 proteins","termid":"PBO:0112977"}


id: GO:0050182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: butanoyl-CoA + phosphate = butanoyl phosphate + CoA.","definition_xrefs":["RHEA:20892","EC:2.3.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"phosphate butyryltransferase activity","secondary_identifiers":["MetaCyc:PHOSPHATE-BUTYRYLTRANSFERASE-RXN","KEGG_REACTION:R01174"],"synonyms":[{"name":"butanoyl-CoA:phosphate butanoyltransferase activity","type":"related"},{"name":"phosphotransbutyrylase activity","type":"related"}],"termid":"GO:0050182"}


id: FYPO:0002180
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which cells in the population are viable, some cells are longer than normal, and the rest of the cells are of normal morphology (i.e. size, shape, and structure).","definition_xrefs":["PomBase:mah","PomBase:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete viable mixed vegetative cell population including cell with normal morphology and long cells (obsolete FYPO:0002180)","synonyms":[{"name":"long low penetrance","type":"related"}],"termid":"FYPO:0002180"}


id: PBO:0015215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocytosis protein Mso1 (predicted)","termid":"PBO:0015215"}


id: PBO:0001033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PQQ repeat","termid":"PBO:0001033"}


id: PBO:0039612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A1","termid":"PBO:0039612"}


id: GO:0071003
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that is formed by the association of the U1, U2, U4/U6 and U5 small nuclear ribonucleoproteins.","definition_xrefs":["GOC:krc","GOC:mah","PMID:11804584","PMID:12724403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal snRNP complex","termid":"GO:0097525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"penta-snRNP complex","synonyms":[{"name":"penta-RNP complex","type":"exact"}],"termid":"GO:0071003"}


id: GO:0100013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates fatty acid beta-oxidation.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of fatty acid beta-oxidation by transcription from RNA polymerase II promoter (obsolete GO:0100013)","termid":"GO:0100013"}


id: MONDO:0022586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone dysplasia Moore type","secondary_identifiers":["GARD:923"],"termid":"MONDO:0022586","xrefs":{"Monarch":{"xref_id":"0022586"}}}


id: MONDO:0006929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the genus proteus.","definition_xrefs":["MESH:D011512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proteus infectious disease","secondary_identifiers":["MEDGEN:46164","SCTID:186437007","UMLS:C0033700"],"synonyms":[{"name":"Proteus <enterobacteria> caused disease or disorder","type":"exact"},{"name":"Proteus <enterobacteria> disease or disorder","type":"exact"},{"name":"Proteus <enterobacteria> infectious disease","type":"exact"},{"name":"Proteus infection","type":"related"},{"name":"infection, Proteus","type":"related"},{"name":"infections, Proteus","type":"related"}],"termid":"MONDO:0006929","xrefs":{"Monarch":{"xref_id":"0006929"}}}


id: PBO:0045579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine triphosphatase pseudogene 1","termid":"PBO:0045579"}


id: GO:0030193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of blood coagulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"regulation of coagulation","termid":"GO:0050818"},{"relation_name":"is_a","term_name":"regulation of wound healing","termid":"GO:0061041"},{"relation_name":"is_a","term_name":"regulation of hemostasis","termid":"GO:1900046"},{"relation_name":"regulates","term_name":"blood coagulation","termid":"GO:0007596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of blood coagulation","termid":"GO:0030193"}


id: FYPO:0002660
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of trehalose 6-phosphate measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular trehalose level","termid":"FYPO:0001447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular trehalose 6-phosphate level","synonyms":[{"name":"decreased cellular trehalose 6-phosphate accumulation","type":"related"},{"name":"decreased cellular trehalose-6P level","type":"exact"},{"name":"reduced cellular trehalose 6-phosphate level","type":"exact"}],"termid":"FYPO:0002660"}


id: PBO:0049494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 1","termid":"PBO:0049494"}


id: GO:0043173
data:
  {"annotated_genes":["SJAG_00957","SJAG_03708","SJAG_01859","SJAG_04709","SJAG_03298","SJAG_00533","SJAG_01298","SJAG_04713","SJAG_04467","SJAG_04354","SJAG_04123","SJAG_01070","SJAG_06634","SJAG_04634","SJAG_01500"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57600,75892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[94980,69825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[103215,77590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[77591,66177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[82014,72763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[111661,91027,92658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"},{"annotations":[69824,90461,93984,89465,94981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[77592,110312],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"metabolic compound salvage","termid":"GO:0043094"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_00957":null,"SJAG_01070":null,"SJAG_01298":null,"SJAG_01500":null,"SJAG_01859":null,"SJAG_03298":null,"SJAG_03708":null,"SJAG_04123":null,"SJAG_04354":null,"SJAG_04467":null,"SJAG_04634":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"nucleotide salvage","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Nucleotide_salvage","Reactome:R-HSA-8956321"],"termid":"GO:0043173","terms_by_termid":{"GO:0019358":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0044206":null,"GO:0044209":null,"GO:0044211":null}}


id: PBO:0061158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide riboside kinase 1","termid":"PBO:0061158"}


id: FYPO:0002925
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to CRE promoter in a chromosome is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromosome during vegetative growth","termid":"FYPO:0002839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to chromosome at CRE promoter","synonyms":[{"name":"decreased protein localisation to chromosome at CRE promoter","type":"exact"},{"name":"decreased protein localization to M26 site","type":"exact"},{"name":"decreased protein localization to chromosome at CRE promoter during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromosome at CRE promoter during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromosome at CRE promoter","type":"exact"}],"termid":"FYPO:0002925"}


id: PBO:0068357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 138 pseudogene 2","termid":"PBO:0068357"}


id: PBO:0110485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 21","termid":"PBO:0110485"}


id: MONDO:0010626
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The X-linked variant of the Hyper-IgM syndrome. The affected individuals are virtually always male, because males only have one X chromosome, received from their mothers. Their mothers are not symptomatic, even though they are carriers of the allele, because the trait is recessive. Male offspring of these women have a 50% chance of inheriting their mother's mutant allele.","definition_xrefs":["Wikipedia:Hyper-IgM_syndrome_type_1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"hyper-IgM syndrome","termid":"MONDO:0003947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"hyper-IgM syndrome type 1","secondary_identifiers":["Orphanet:101088","NCIT:C61244","DOID:6620","MEDGEN:96019","NORD:1261","DOID:0060022","OMIM:308230","UMLS:C0398689","GARD:73","SCTID:403835002"],"synonyms":[{"name":"CD40 ligand deficiency","type":"related"},{"name":"HIGM","type":"related"},{"name":"HIGM1","type":"exact"},{"name":"HIGMX-1","type":"exact"},{"name":"Hyper IgM Syndromes","type":"exact"},{"name":"IHIS","type":"related"},{"name":"X-linked hyper IgM syndrome","type":"related"},{"name":"X-linked hyper-IgM syndrome","type":"exact"},{"name":"XHIGM","type":"exact"},{"name":"XHIM","type":"related"},{"name":"hyper IgM immunodeficiency, X-linked","type":"related"},{"name":"hyper IgM syndrome","type":"related"},{"name":"hyper IgM syndrome 1","type":"related"},{"name":"hyper-IgM immunodeficiency, X-linked","type":"related"},{"name":"hyper-IgM syndrome","type":"related"},{"name":"hyper-IgM syndrome 1","type":"related"},{"name":"hyper-IgM syndrome due to CD40 ligand deficiency","type":"exact"},{"name":"hyper-IgM syndrome due to CD40L deficiency","type":"exact"},{"name":"hyper-IgM syndrome type 1","type":"exact"},{"name":"hyper-IgM syndrome, X-linked","type":"exact"},{"name":"hyperimmunoglobulin M syndrome","type":"exact"},{"name":"immunodeficiency 3","type":"related"},{"name":"immunodeficiency with hyper IgM type 1","type":"related"},{"name":"immunodeficiency with hyper-IgM, type 1","type":"related"},{"name":"immunodeficiency, X-linked, with hyper-IgM, X-linked recessive","type":"exact"}],"termid":"MONDO:0010626","xrefs":{"Monarch":{"xref_id":"0010626"}}}


id: PBO:0052448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 3","termid":"PBO:0052448"}


id: PBO:0005559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex subunit (predicted)","termid":"PBO:0005559"}


id: PBO:0038579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activator of basal transcription 1","termid":"PBO:0038579"}


id: PBO:0004221
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mago Nashi Interacting protein","termid":"PBO:0004221"}


id: PR:Q09873
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wdr21 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat-containing protein 21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.10","synonyms":[{"name":"Spom972h-wdr21","type":"exact"}],"termid":"PR:Q09873"}


id: PBO:0120847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPFI scaffold protein A3","termid":"PBO:0120847"}


id: GO:0120173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of actin filament bundle convergence involved in mitotic contractile ring assembly.","definition_xrefs":["GOC:vw","PMID:24798735"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of actin filament bundle convergence involved in mitotic contractile ring assembly (obsolete GO:0120173)","termid":"GO:0120173"}


id: PBO:0064930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 6 regulatory subunit 3","termid":"PBO:0064930"}


id: GO:0120237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a terminal acetylenic compound, a compound which contains a terminal alkyne moiety in which a carbon of the carbon-carbon triple bond (aka C#C) moiety is attached to a hydrogen atom.","definition_xrefs":["DOI:10.1007/978-1-4615-4913-0_3","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal acetylenic compound metabolic process","termid":"GO:0120244"},{"relation_name":"is_a","term_name":"acetylenic compound biosynthetic process","termid":"GO:0120247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"terminal acetylenic compound biosynthetic process","synonyms":[{"name":"terminal alkyne substituted compound anabolic process","type":"exact"},{"name":"terminal alkyne substituted compound anabolism","type":"exact"},{"name":"terminal alkyne substituted compound biosynthesis","type":"exact"},{"name":"terminal alkyne substituted compound biosynthetic process","type":"exact"},{"name":"terminal alkyne substituted compound synthesis","type":"exact"}],"termid":"GO:0120237"}


id: GO:0014908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. This process occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myotube differentiation","termid":"GO:0014902"},{"relation_name":"part_of","term_name":"skeletal muscle tissue regeneration","termid":"GO:0043403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myotube differentiation involved in skeletal muscle regeneration","termid":"GO:0014908"}


id: PBO:0069605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 882, pseudogene","termid":"PBO:0069605"}


id: PBO:0089223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol transfer protein Osh2","termid":"PBO:0089223"}


id: GO:0031450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of slow-twitch skeletal muscle contraction.","definition_xrefs":["GOC:ef","GOC:mah","GOC:dph","GOC:mtg_muscle","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of slow-twitch skeletal muscle fiber contraction","termid":"GO:0031449"},{"relation_name":"is_a","term_name":"negative regulation of striated muscle contraction","termid":"GO:0045988"},{"relation_name":"negatively_regulates","term_name":"slow-twitch skeletal muscle fiber contraction","termid":"GO:0031444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of slow-twitch skeletal muscle fiber contraction","synonyms":[{"name":"down regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"down-regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"downregulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"inhibition of slow-twitch skeletal muscle contraction","type":"narrow"},{"name":"negative regulation of slow-twitch skeletal muscle contraction","type":"exact"}],"termid":"GO:0031450"}


