# terms

id: PR:Q9P3V5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1348.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3V5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C1348.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1348.05","synonyms":[{"name":"Spom972h-SPBC1348.05","type":"exact"}],"termid":"PR:Q9P3V5"}


id: MONDO:0002253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A degenerative spinal disease that can involve any part of the vertebra, the intervertebral disk, and the surrounding soft tissue.","definition_xrefs":["MESH:D055009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disease of bone structure","termid":"MONDO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondylosis","secondary_identifiers":["SCTID:48210000","MEDGEN:21295","ICD10CM:M47","SCTID:8847002","DOID:2247","ICD9:721.3","ICD10WHO:M47","ICD9:721.9","UMLS:C0038019"],"synonyms":[{"name":"lumbar spondylosis with myelopathy","type":"exact"},{"name":"lumbosacral spondylosis without myelopathy","type":"exact"},{"name":"spondylogenic compression of lumbar spinal cord","type":"exact"},{"name":"spondylogenic compression of thoracic spinal cord","type":"exact"},{"name":"spondylosis with myelopathy","type":"exact"},{"name":"thoracic or lumbar spondylosis with myelopathy","type":"exact"}],"termid":"MONDO:0002253","xrefs":{"Monarch":{"xref_id":"0002253"}}}


id: PBO:0048176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphatase catalytic subunit 3","termid":"PBO:0048176"}


id: GO:0033209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by tumor necrosis factor binding to its receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to tumor necrosis factor","termid":"GO:0071356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"tumor necrosis factor-mediated signaling pathway","secondary_identifiers":["Reactome:R-HSA-5668541","Reactome:R-HSA-75893"],"synonyms":[{"name":"TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"adipocytokine signaling pathway","type":"related"},{"name":"tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"tumor necrosis factor-mediated signalling pathway","type":"exact"}],"termid":"GO:0033209"}


id: GO:0002670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of B cell anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B cell tolerance induction","termid":"GO:0002661"},{"relation_name":"is_a","term_name":"regulation of lymphocyte anergy","termid":"GO:0002911"},{"relation_name":"regulates","term_name":"B cell anergy","termid":"GO:0002515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of B cell anergy","synonyms":[{"name":"regulation of B lymphocyte anergy","type":"exact"},{"name":"regulation of B-cell anergy","type":"exact"},{"name":"regulation of B-lymphocyte anergy","type":"exact"}],"termid":"GO:0002670"}


id: GO:0015192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-phenylalanine from one side of a membrane to the other. L-phenylalanine is 2-amino-3-phenylpropanoic acid.","definition_xrefs":["ISBN:0815340729","GOC:ai","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"aromatic amino acid transmembrane transporter activity","termid":"GO:0015173"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"L-phenylalanine transmembrane transporter activity","synonyms":[{"name":"L-phenylalanine permease activity","type":"exact"},{"name":"L-phenylalanine transporter activity","type":"broad"}],"termid":"GO:0015192"}


id: GO:2000091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glomerular mesangial cell proliferation","termid":"GO:0072125"},{"relation_name":"is_a","term_name":"regulation of mesonephric glomerular mesangial cell proliferation","termid":"GO:2000090"},{"relation_name":"is_a","term_name":"negative regulation of cell proliferation involved in mesonephros development","termid":"GO:2000607"},{"relation_name":"negatively_regulates","term_name":"mesonephric glomerular mesangial cell proliferation involved in mesonephros development","termid":"GO:0061269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesonephric glomerular mesangial cell proliferation","termid":"GO:2000091"}


id: GO:0015127
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of bilirubin from one side of a membrane to the other. Bilirubin is a linear tetrapyrrole produced in the reticuloendothelial system from biliverdin and transported to the liver as a complex with serum albumin. In the liver, bilirubin is converted to bilirubin bisglucuronide, which is excreted in the bile.","definition_xrefs":["GOC:ai","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"bilirubin transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5679031","Reactome:R-HSA-9661417","Reactome:R-HSA-5679041"],"termid":"GO:0015127"}


id: PBO:0045217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC8 pseudogene 2","termid":"PBO:0045217"}


id: PBO:0072106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S13 pseudogene 4","termid":"PBO:0072106"}


id: PBO:0069138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 389, pseudogene","termid":"PBO:0069138"}


id: PBO:0091855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein P1 Rpp102","termid":"PBO:0091855"}


id: SO:0001214
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The maximal intersection of exon and UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exon_region","termid":"SO:0000852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"noncoding_region_of_exon","synonyms":[{"name":"noncoding region of exon","type":"exact"}],"termid":"SO:0001214"}


id: MONDO:0031323
data:
  {"annotated_genes":["SJAG_01519"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008913"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01519":null},"genotype_count":0,"is_obsolete":false,"name":"cardiac valvular defect","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:212093"],"termid":"MONDO:0031323","terms_by_termid":{"MONDO:0008913":null},"xrefs":{"Monarch":{"xref_id":"0031323"}}}


id: PBO:0062439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 103 pseudogene","termid":"PBO:0062439"}


id: PBO:0083208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF FRT1","termid":"PBO:0083208"}


id: PBO:0086475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; identified by homology; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0086475"}


id: GO:0034634
data:
  {"annotated_genes":["SJAG_03577","SJAG_01660"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97539,115191],"is_not":false,"summary":null,"term":"GO:0034634"}]},"cv_name":"molecular_function","definition":"Enables the transfer of glutathione, the tripeptide glutamylcysteinylglycine, from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"tripeptide transmembrane transporter activity","termid":"GO:0042937"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01660":null,"SJAG_03577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"glutathione transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034634","terms_by_termid":{"GO:0034634":null}}


id: PBO:0046408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial cell adhesion molecule","termid":"PBO:0046408"}


id: PBO:0059091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MORC family CW-type zinc finger 3","termid":"PBO:0059091"}


id: MONDO:0100546
data:
  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id: GO:0048897
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of compact myelin sheaths around the axons of a lateral line nerve.","definition_xrefs":["PMID:12112375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelination","termid":"GO:0042552"},{"relation_name":"part_of","term_name":"lateral line nerve glial cell morphogenesis involved in differentiation","termid":"GO:0048938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myelination of lateral line nerve axons","termid":"GO:0048897"}


id: GO:0014822
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an injury stimulus is received and converted into a molecular signal.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of external stimulus","termid":"GO:0009581"},{"relation_name":"is_a","term_name":"response to wounding","termid":"GO:0009611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of wounding","synonyms":[{"name":"detection of injury","type":"exact"}],"termid":"GO:0014822"}


id: PBO:0055839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ligand dependent nuclear receptor interacting factor 1","termid":"PBO:0055839"}


id: GO:0050568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein L-glutamine + H2O = protein L-glutamate + NH3.","definition_xrefs":["EC:3.5.1.44","MetaCyc:CHEBDEAMID-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0140096","GO:0016787"],"is_obsolete":false,"name":"protein-glutamine glutaminase activity","secondary_identifiers":["RHEA:16441"],"synonyms":[{"name":"destabilase activity","type":"related"},{"name":"glutaminyl-peptide glutaminase activity","type":"related"},{"name":"glutaminylpeptide glutaminase activity","type":"related"},{"name":"peptidoglutaminase II activity","type":"related"},{"name":"peptidylglutaminase II","type":"related"},{"name":"protein-L-glutamine amidohydrolase activity","type":"related"}],"termid":"GO:0050568"}


id: GO:0032708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-24 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-24 production","termid":"GO:0032668"},{"relation_name":"negatively_regulates","term_name":"interleukin-24 production","termid":"GO:0032628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-24 production","secondary_identifiers":["GO:0045532"],"synonyms":[{"name":"down regulation of interleukin-24 production","type":"exact"},{"name":"down-regulation of interleukin-24 production","type":"exact"},{"name":"downregulation of interleukin-24 production","type":"exact"},{"name":"inhibition of interleukin-24 production","type":"narrow"},{"name":"negative regulation of IL-24 production","type":"exact"},{"name":"negative regulation of interleukin-24 biosynthetic process","type":"narrow"}],"termid":"GO:0032708"}


id: GO:0018555
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + NADH + H+ + O2 = NAD+ + cis-3,4-dihydroxy-3,4-dihydrophenanthrene.","definition_xrefs":["UM-BBD_reactionID:r0455"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene dioxygenase activity (obsolete GO:0018555)","termid":"GO:0018555"}


id: PBO:0063635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"profilin 2","termid":"PBO:0063635"}


id: PBO:0066811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 110","termid":"PBO:0066811"}


id: GO:0002625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of T cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"regulates","term_name":"T cell antigen processing and presentation","termid":"GO:0002457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell antigen processing and presentation","synonyms":[{"name":"regulation of T lymphocyte antigen processing and presentation","type":"exact"},{"name":"regulation of T-cell antigen processing and presentation","type":"exact"},{"name":"regulation of T-lymphocyte antigen processing and presentation","type":"exact"}],"termid":"GO:0002625"}


id: GO:0038183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by bile acid binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","PMID:36409000","PMID:12016314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"bile acid signaling pathway","termid":"GO:0038183"}


id: MONDO:0021497
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the telencephalon.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm of cerebral hemisphere","termid":"MONDO:0021374"},{"relation_name":"is_a","term_name":"benign neoplasm of brain","termid":"MONDO:0021451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of cerebrum","secondary_identifiers":["MEDGEN:195785","icd11.foundation:1857115524","NCIT:C8548","UMLS:C0686378","SCTID:275269004"],"synonyms":[{"name":"benign cerebral hemispheric neoplasm","type":"exact"},{"name":"benign cerebral hemispheric tumor","type":"exact"},{"name":"benign cerebral hemispheric tumour","type":"exact"},{"name":"benign cerebral neoplasm","type":"exact"},{"name":"benign cerebral tumor","type":"exact"},{"name":"benign cerebral tumour","type":"exact"},{"name":"benign neoplasm of cerebral hemispheres","type":"exact"},{"name":"benign neoplasm of the cerebral hemispheres","type":"exact"},{"name":"benign neoplasm of the cerebrum","type":"exact"},{"name":"benign tumor of cerebral hemispheres","type":"exact"},{"name":"benign tumor of cerebrum","type":"exact"},{"name":"benign tumor of the cerebral hemispheres","type":"exact"},{"name":"benign tumor of the cerebrum","type":"exact"},{"name":"benign tumour of cerebral hemispheres","type":"exact"},{"name":"benign tumour of cerebrum","type":"exact"},{"name":"benign tumour of the cerebral hemispheres","type":"exact"},{"name":"benign tumour of the cerebrum","type":"exact"},{"name":"telencephalon benign neoplasm","type":"exact"}],"termid":"MONDO:0021497","xrefs":{"Monarch":{"xref_id":"0021497"}}}


id: PBO:0000837
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.8.1.2","termid":"PBO:0000837"}


id: PBO:0054561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1963","termid":"PBO:0054561"}


id: GO:1901703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any protein localization that is involved in auxin polar transport.","definition_xrefs":["PMID:23163883","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein localization","termid":"GO:0008104"},{"relation_name":"part_of","term_name":"auxin polar transport","termid":"GO:0009926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization involved in auxin polar transport","synonyms":[{"name":"establishment and maintenance of protein localization involved in auxin polar transport","type":"exact"},{"name":"protein localisation involved in auxin polar transport","type":"exact"}],"termid":"GO:1901703"}


id: PBO:0070152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 66 pseudogene","termid":"PBO:0070152"}


id: GO:0090681
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled receptor activity that is responsible for the sense of taste.","definition_xrefs":["GOC:hat","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"taste receptor activity","termid":"GO:0008527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"GPCR taste receptor activity","synonyms":[{"name":"G-protein coupled taste receptor activity","type":"exact"},{"name":"G-protein-coupled taste receptor activity","type":"exact"}],"termid":"GO:0090681"}


id: MONDO:0859232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with central hypotonia and dysmorphic facies","secondary_identifiers":["UMLS:C5676944","MEDGEN:1807420","OMIM:619797"],"termid":"MONDO:0859232","xrefs":{"Monarch":{"xref_id":"0859232"}}}


id: GO:0010464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"mesenchymal cell proliferation","termid":"GO:0010463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal cell proliferation","termid":"GO:0010464"}


id: PBO:0089594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp4","termid":"PBO:0089594"}


id: GO:1905292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of neural crest cell differentiation.","definition_xrefs":["GOC:BHF","PMID:15073157","GOC:rl","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stem cell differentiation","termid":"GO:2000736"},{"relation_name":"regulates","term_name":"neural crest cell differentiation","termid":"GO:0014033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neural crest cell differentiation","termid":"GO:1905292"}


id: PBO:0074566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 20","termid":"PBO:0074566"}


id: MONDO:0000693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bipolar disorder that is characterized by at least one hypomanic episode and at least one major depressive episode; with this disorder, depressive episodes are more frequent and more intense than manic episodes.","definition_xrefs":["DOID:0060166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bipolar disorder","termid":"MONDO:0004985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bipolar II disorder","secondary_identifiers":["MEDGEN:536634","UMLS:C0236788","SCTID:83225003","ICD9:296.89","ICD10CM:F31.81"],"synonyms":[{"name":"bipolar 2 disorder","type":"related"},{"name":"bipolar II disorder","type":"exact"},{"name":"bipolar ll disorder","type":"related"}],"termid":"MONDO:0000693","xrefs":{"Monarch":{"xref_id":"0000693"}}}


id: GO:0046403
data:
  {"annotated_genes":["SJAG_02680"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72646],"is_not":false,"summary":null,"term":"GO:0046403"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3'end (2'-deoxyribonucleotide 3'-phosphate)-DNA + H2O = a 3'-end 2'-deoxyribonucleotide-DNA + phosphate.","definition_xrefs":["RHEA:14113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02680":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"polynucleotide 3'-phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:3.1.3.32","MetaCyc:POLYNUCLEOTIDE-3-PHOSPHATASE-RXN","Reactome:R-HSA-5649705"],"synonyms":[{"name":"2'(3')-polynucleotidase activity","type":"related"},{"name":"5'-polynucleotidekinase 3'-phosphatase activity","type":"related"},{"name":"DNA 3'-phosphatase activity","type":"related"},{"name":"deoxyribonucleate 3'-phosphatase activity","type":"related"},{"name":"polynucleotide 3'-phosphohydrolase activity","type":"related"}],"termid":"GO:0046403","terms_by_termid":{"GO:0046403":null}}


id: GO:0016975
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Inhibition of proteinase by a mechanism involving a bait region which contains specific sites, cleavage of which induces a conformational change that results in trapping of the proteinase; following cleavage in the bait region a thiolester bond is hydrolyzed and mediates the covalent binding of the protein to the proteinase; subsequently epsilon-amino groups of the proteinase react with thiolester linkages in the inhibitor to form stable amide links; the entrapped proteinase can now only act on low molecular mass substrates.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-2 macroglobulin (obsolete GO:0016975)","synonyms":[{"name":"alpha-2 macroglobulin","type":"exact"}],"termid":"GO:0016975"}


id: MONDO:0007259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Craniofaciofrontodigital is a rare multiple congenital anomalies syndrome characterized by mild intellectual disability, short stature, cardiac anomalies, mild dysmorphic features (macrocephaly, prominent forehead, hypertelorism, exophthalmos), cutis laxa, joint hyperlaxity, wrinkled palms and soles and skeletal anomalies (sella turcica, wide ribs and small vertebral bodies).","definition_xrefs":["Orphanet:363705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"inherited cutis laxa","termid":"MONDO:0100237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craniofaciofrontodigital syndrome","secondary_identifiers":["OMIM:114620","GARD:17571","MEDGEN:393947","MESH:C567298","SCTID:763320005","UMLS:C2676032"],"synonyms":[{"name":"Cantu craniofaciofrontodigital syndrome","type":"exact"},{"name":"craniofaciofrontodigital syndrome","type":"exact"}],"termid":"MONDO:0007259","xrefs":{"Monarch":{"xref_id":"0007259"}}}


id: PBO:0030615
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_cell_wall-degrading_enzymes","termid":"PBO:0030615"}


id: MONDO:0009437
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bamforth-Lazarus syndrome is a very rare syndrome of congenital hypothyroidism characterized by thyroid dysgenesis (in most cases athyreosis), cleft palate and spiky hair, with or without choanal atresia, and bifid epiglottis. Facial dysmorphism and porencephaly have been reported in isolated cases.","definition_xrefs":["Orphanet:1226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bamforth-Lazarus syndrome","secondary_identifiers":["icd11.foundation:1747690671","MEDGEN:343420","SCTID:722375007","MESH:C537901","UMLS:C1855794","OMIM:241850","DOID:0050655","GARD:414"],"synonyms":[{"name":"Athyroidal hypothyroidism-spiky hair-cleft palate syndrome","type":"exact"},{"name":"Bamforth syndrome","type":"exact"},{"name":"Bamforth-Lazarus syndrome","type":"exact"},{"name":"hypothyroidism cleft palate hypothyroidism, athyroidal, with spiky hair and cleft palate","type":"related"},{"name":"hypothyroidism, ATHYROIDAL, with spiky hair and cleft palate","type":"exact"},{"name":"hypothyroidism, thyroidal or ATHYROIDAL, with spiky hair and cleft palate","type":"related"},{"name":"hypothyroidism-cleft palate syndrome","type":"exact"}],"termid":"MONDO:0009437","xrefs":{"Monarch":{"xref_id":"0009437"}}}


id: PBO:0061775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obscurin like cytoskeletal adaptor 1","termid":"PBO:0061775"}


id: MONDO:0018982
data:
  {"annotated_genes":["SJAG_01407"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011873"}]},"cv_name":"mondo","definition":"NPC is a complex lipid storage disease mainly characterized by the accumulation of unesterified cholesterol in the late endosomal/lysosomal compartment.","definition_xrefs":["PMID:21502308"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"lysosomal storage disease","termid":"MONDO:0002561"},{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary interstitial lung disease in childhood and adulthood associated with a metabolic disease (obsolete MONDO:0017037)","termid":"MONDO:0017037"},{"relation_name":"excluded_subClassOf","term_name":"obsolete sphingolipidosis with epilepsy (obsolete MONDO:0018299)","termid":"MONDO:0018299"},{"relation_name":"excluded_subClassOf","term_name":"obsolete neurometabolic disease (obsolete MONDO:0019058)","termid":"MONDO:0019058"},{"relation_name":"excluded_subClassOf","term_name":"lysosomal lipid storage disorder","termid":"MONDO:0019245"},{"relation_name":"excluded_subClassOf","term_name":"cerebral lipidosis with dementia","termid":"MONDO:0020143"},{"relation_name":"excluded_subClassOf","term_name":"obsolete unclassified primitive or secondary maculopathy (obsolete MONDO:0020244)","termid":"MONDO:0020244"},{"relation_name":"excluded_subClassOf","term_name":"supranuclear oculomotor palsy","termid":"MONDO:0020257"},{"relation_name":"is_a","term_name":"Niemann-Pick disease","termid":"MONDO:0001982"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01407":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0002561","MONDO:0005066","MONDO:0006025","MONDO:0005046"],"is_obsolete":false,"name":"Niemann-Pick disease type C","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D052556","MEDGEN:67399","icd11.foundation:812702125","NORD:1509","NANDO:1200063","GARD:7207","ICD10CM:E75.242","Orphanet:646","UMLS:C0220756","SCTID:66751000"],"synonyms":[{"name":"NPC","type":"broad"},{"name":"Niemann Pick Disease Type C","type":"exact"}],"termid":"MONDO:0018982","terms_by_termid":{"MONDO:0011873":null},"xrefs":{"Monarch":{"xref_id":"0018982"}}}


id: PBO:0119294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltranstransferase subunit Erg20","termid":"PBO:0119294"}


id: GO:0150032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to lysosome.","definition_xrefs":["GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to lysosome","termid":"GO:0150031"},{"relation_name":"is_a","term_name":"positive regulation of protein localization","termid":"GO:1903829"},{"relation_name":"positively_regulates","term_name":"protein localization to lysosome","termid":"GO:0061462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to lysosome","termid":"GO:0150032"}


id: GO:0003061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine into the bloodstream or released from nerve endings modulates the force of heart musclecontraction.","definition_xrefs":["GOC:mtg_cardio","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of the force of heart contraction by chemical signal","termid":"GO:0003099"},{"relation_name":"part_of","term_name":"positive regulation of the force of heart contraction by epinephrine-norepinephrine","termid":"GO:0001997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of the force of heart contraction by norepinephrine","synonyms":[{"name":"increased force of heart contraction by adrenaline","type":"related"},{"name":"increased force of heart contraction by norepinephrine","type":"exact"},{"name":"noradrenaline cardiac inotropy","type":"exact"},{"name":"noradrenaline regulation of the strength of heart muscle contraction","type":"exact"},{"name":"norepinephrine cardiac inotropy","type":"exact"},{"name":"positive regulation of heart contraction by adrenaline","type":"related"},{"name":"positive regulation of heart contraction by norepinephrine","type":"related"}],"termid":"GO:0003061"}


id: GO:0010324
data:
  {"annotated_genes":["SJAG_05289"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061736"}]},"cv_name":"biological_process","definition":"The infolding of a membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"membrane invagination","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902534"],"synonyms":[{"name":"single-organism membrane invagination","type":"related"}],"termid":"GO:0010324","terms_by_termid":{"GO:0061736":null}}


id: PBO:0081621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 550","termid":"PBO:0081621"}


id: PBO:0090857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane proline transmembrane transporter Put4","termid":"PBO:0090857"}


id: GO:0006501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a lipid group to the carboxy-terminus of a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"},{"relation_name":"is_a","term_name":"C-terminal protein amino acid modification","termid":"GO:0018410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"C-terminal protein lipidation","secondary_identifiers":["Reactome:R-HSA-163125"],"termid":"GO:0006501"}


id: MONDO:0020266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genodermatosis with ocular features (obsolete MONDO:0020266)","secondary_identifiers":["Orphanet:98696"],"termid":"MONDO:0020266","xrefs":{"Monarch":{"xref_id":"0020266"}}}


id: SO:0000659
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that can be transcribed into a transfer-messenger RNA (tmRNA).","direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA_encoding","synonyms":[{"name":"tmRNA encoding","type":"exact"}],"termid":"SO:0000659"}


id: MONDO:0012039
data:
  {"annotated_genes":["SJAG_03494","SJAG_02562","SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89305,89306,89307],"is_not":false,"summary":null,"term":"MONDO:0012039"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00988":null,"SJAG_02562":null,"SJAG_03494":null},"genotype_count":0,"is_obsolete":false,"name":"myocardial infarction, susceptibility to","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:318680","UMLS:C1832662","OMIM:608446"],"synonyms":[{"name":"myocardial infarction, decreased susceptibility to","type":"exact"},{"name":"myocardial infarction, protection against","type":"related"},{"name":"myocardial infarction, susceptibility to","type":"exact"},{"name":"myocardial infarction, susceptibility to, 1","type":"related"},{"name":"susceptibility to myocardial infarction","type":"related"}],"termid":"MONDO:0012039","terms_by_termid":{"MONDO:0012039":null},"xrefs":{"Monarch":{"xref_id":"0012039"}}}


id: PBO:0080218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vinculin/alpha-catenin family member 1, pseudogene","termid":"PBO:0080218"}


id: GO:0051087
data:
  {"annotated_genes":["SJAG_03784","SJAG_01684","SJAG_01545","SJAG_00574","SJAG_01737","SJAG_00436","SJAG_04817","SJAG_00066","SJAG_04014","SJAG_04228","SJAG_01914","SJAG_03955","SJAG_00403","SJAG_01121","SJAG_04518","SJAG_04187","SJAG_00564","SJAG_03094","SJAG_04336","SJAG_03135","SJAG_01160","SJAG_03794","SJAG_02077"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59030,59819,61868,68453,68634,69886,71873,72238,73645,74975,76565,78155,78521,79646,80957,81098],"is_not":false,"summary":null,"term":"GO:0051087"},{"annotations":[81831,68208,79845,68490,59717,72827,81727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030544"}]},"cv_name":"molecular_function","definition":"Binding to a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.","definition_xrefs":["PMID:10585443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00066":null,"SJAG_00403":null,"SJAG_00436":null,"SJAG_00564":null,"SJAG_00574":null,"SJAG_01121":null,"SJAG_01160":null,"SJAG_01545":null,"SJAG_01684":null,"SJAG_01737":null,"SJAG_01914":null,"SJAG_02077":null,"SJAG_03094":null,"SJAG_03135":null,"SJAG_03784":null,"SJAG_03794":null,"SJAG_03955":null,"SJAG_04014":null,"SJAG_04187":null,"SJAG_04228":null,"SJAG_04336":null,"SJAG_04518":null,"SJAG_04817":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"protein-folding chaperone binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"chaperone binding","type":"broad"},{"name":"chaperone protein binding","type":"exact"},{"name":"co-chaperone activity","type":"related"},{"name":"co-chaperonin activity","type":"related"}],"termid":"GO:0051087","terms_by_termid":{"GO:0030544":null,"GO:0051087":null}}


id: GO:0071716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosanoid transport","termid":"GO:0071715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"leukotriene transport","termid":"GO:0071716"}


id: GO:0009156
data:
  {"annotated_genes":["SJAG_04713","SJAG_03140","SJAG_01814","SJAG_01070","SJAG_03811","SJAG_01081","SJAG_01298","SJAG_02364","SJAG_04123","SJAG_06634","SJAG_04354","SJAG_04970","SJAG_04882","SJAG_01661","SJAG_03164","SJAG_02850","SJAG_00044","SJAG_00964","SJAG_00533","SJAG_03708","SJAG_00197","SJAG_03355","SJAG_04845","SJAG_04709","SJAG_00444","SJAG_01859","SJAG_04634","SJAG_00694","SJAG_04681"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60776,62703,64654],"is_not":false,"summary":null,"term":"GO:0009156"},{"annotations":[80903,78932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044208"},{"annotations":[65666,67024,71877,60793,57449,78708,73548,58584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006189"},{"annotations":[59713,60087,61937,57568,62934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[75892,57600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[69823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[74796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009398"},{"annotations":[60086,64139],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006177"},{"annotations":[103215,77590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[77591,66177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[94981,89465,90461,69824,93984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[77592,110312],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate biosynthetic process","termid":"GO:0009124"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00964":null,"SJAG_01070":null,"SJAG_01081":null,"SJAG_01298":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_01859":null,"SJAG_02364":null,"SJAG_02850":null,"SJAG_03140":null,"SJAG_03164":null,"SJAG_03355":null,"SJAG_03708":null,"SJAG_03811":null,"SJAG_04123":null,"SJAG_04354":null,"SJAG_04634":null,"SJAG_04681":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_04845":null,"SJAG_04882":null,"SJAG_04970":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ribonucleoside monophosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"ribonucleoside monophosphate anabolism","type":"exact"},{"name":"ribonucleoside monophosphate biosynthesis","type":"exact"},{"name":"ribonucleoside monophosphate formation","type":"exact"},{"name":"ribonucleoside monophosphate synthesis","type":"exact"}],"termid":"GO:0009156","terms_by_termid":{"GO:0006177":null,"GO:0006189":null,"GO:0009156":null,"GO:0009224":null,"GO:0009398":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0044205":null,"GO:0044206":null,"GO:0044208":null,"GO:0044209":null}}


id: PBO:0043937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRTC1 pseudogene 1","termid":"PBO:0043937"}


id: MONDO:0012582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Interstitial lung disease due to ABCA3 deficiency is a rare genetic respiratory disease characterized by a variable clinical outcome ranging from a fatal respiratory distress syndrome in the neonatal period to chronic interstitial lung disease developing in infancy or childhood with chronic cough, rapid breathing, shortness of breath and recurrent pulmonary infections. Clinical manifestations of respiratory failure include grunting, intercostal retractions, nasal flaring, cyanosis, and progressive dyspnea.","definition_xrefs":["Orphanet:440402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary pulmonary alveolar proteinosis","termid":"MONDO:0012580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interstitial lung disease due to ABCA3 deficiency","secondary_identifiers":["MESH:C567046","OMIM:610921","UMLS:C1970456","MEDGEN:410074","GARD:17745"],"synonyms":[{"name":"SMDP3","type":"related"},{"name":"interstitial lung disease due to ABCA3 deficiency","type":"exact"},{"name":"interstitial lung disease due to ATP-binding cassette subfamily A member 3 deficiency","type":"exact"},{"name":"pulmonary alveolar proteinosis, congenital, 3","type":"related"},{"name":"surfactant metabolism dysfunction, pulmonary, 3","type":"related"},{"name":"surfactant metabolism dysfunction, pulmonary, type 3","type":"exact"}],"termid":"MONDO:0012582","xrefs":{"Monarch":{"xref_id":"0012582"}}}


id: PBO:0116814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoregulin","termid":"PBO:0116814"}


id: GO:0033339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pectoral fin over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fin development","termid":"GO:0033333"},{"relation_name":"is_a","term_name":"limb development","termid":"GO:0060173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pectoral fin development","termid":"GO:0033339"}


id: PBO:0042523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 2 associated protein 2 pseudogene 1","termid":"PBO:0042523"}


id: MONDO:0042491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplastic process that affects the squamous epithelium of the cervix. It is classified as cervical squamous intraepithelial neoplasia 1, 2, or 3, according to the degree of squamous cell maturation and cellular atypia, and the number of mitotic figures.","definition_xrefs":["NCIT:C7346"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"dysplasia of cervix","termid":"MONDO:0006736"},{"relation_name":"is_a","term_name":"uterine cervix neoplasm","termid":"MONDO:0021230"},{"relation_name":"is_a","term_name":"cervical intraepithelial neoplasia","termid":"MONDO:0022394"},{"relation_name":"is_a","term_name":"squamous cell intraepithelial neoplasia","termid":"MONDO:0024475"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical squamous intraepithelial neoplasia","secondary_identifiers":["MEDGEN:234116","MESH:D065310","UMLS:C1332922"],"synonyms":[{"name":"CIN","type":"exact"},{"name":"cervical sil","type":"exact"},{"name":"cervical squamous intraepithelial lesion","type":"exact"},{"name":"cervical squamous intraepithelial neoplasia","type":"exact"},{"name":"cervix squamous intraepithelial lesion","type":"exact"},{"name":"cervix uteri sil","type":"exact"},{"name":"cervix uteri squamous intraepithelial lesion","type":"exact"},{"name":"squamous intraepithelial lesion of cervix","type":"exact"},{"name":"squamous intraepithelial lesion of cervix uteri","type":"exact"},{"name":"squamous intraepithelial lesion of the cervix","type":"exact"},{"name":"squamous intraepithelial lesion of the cervix uteri","type":"exact"},{"name":"squamous intraepithelial lesion of the uterine cervix","type":"exact"},{"name":"squamous intraepithelial lesion of uterine cervix","type":"exact"},{"name":"uterine cervix sil","type":"exact"},{"name":"uterine cervix squamous intraepithelial lesion","type":"exact"}],"termid":"MONDO:0042491","xrefs":{"Monarch":{"xref_id":"0042491"}}}


id: PBO:0062589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily H member 4","termid":"PBO:0062589"}


id: PBO:0039929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 34, pseudogene","termid":"PBO:0039929"}


id: GO:0031594
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse","termid":"GO:0045202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuromuscular junction","secondary_identifiers":["Wikipedia:Neuromuscular_junction","NIF_Subcellular:sao1124888485"],"synonyms":[{"name":"NMJ","type":"related"},{"name":"motor endplate","type":"related"}],"termid":"GO:0031594"}


id: PBO:0016973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR90","termid":"PBO:0016973"}


id: MONDO:0018241
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary short bowel syndrome (obsolete MONDO:0018241)","secondary_identifiers":["Orphanet:365563"],"termid":"MONDO:0018241","xrefs":{"Monarch":{"xref_id":"0018241"}}}


id: GO:0000433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of glucose leads to a decrease in the frequency, rate, or extent of transcription of specific RNA polymerase II-transcribed genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon catabolite repression of transcription by glucose","termid":"GO:0045014"},{"relation_name":"is_a","term_name":"negative regulation of transcription from RNA polymerase II promoter by glucose","termid":"GO:0061987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006351","GO:0010467","GO:0008150","GO:0006355"],"is_obsolete":false,"name":"carbon catabolite repression of transcription from RNA polymerase II promoter by glucose","synonyms":[{"name":"down regulation of transcription from RNA polymerase II promoter by glucose","type":"exact"},{"name":"down-regulation of transcription from RNA polymerase II promoter by glucose","type":"exact"},{"name":"downregulation of transcription from RNA polymerase II promoter by glucose","type":"exact"},{"name":"inhibition of transcription from RNA polymerase II promoter by glucose","type":"narrow"}],"termid":"GO:0000433"}


id: GO:0019232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an organism senses the speed and direction of movement of the body and its parts.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proprioception","termid":"GO:0019230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"perception of rate of movement","synonyms":[{"name":"kinesthesia","type":"exact"}],"termid":"GO:0019232"}


id: PBO:0067286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 369, pseudogene","termid":"PBO:0067286"}


id: MONDO:0000446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"midface dysplasia","secondary_identifiers":["DOID:0050767"],"termid":"MONDO:0000446","xrefs":{"Monarch":{"xref_id":"0000446"}}}


id: GO:1900407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to oxidative stress.","definition_xrefs":["GOC:mah","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"is_a","term_name":"regulation of response to oxidative stress","termid":"GO:1902882"},{"relation_name":"regulates","term_name":"cellular response to oxidative stress","termid":"GO:0034599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to oxidative stress","synonyms":[{"name":"regulation of adaptive response to oxidative stress","type":"narrow"}],"termid":"GO:1900407"}


id: PBO:0029701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nucleoside_diphosphate_kinase_activity","termid":"PBO:0029701"}


id: PBO:0017752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial methionine-tRNA ligase Msm1 (predicted)","termid":"PBO:0017752"}


id: MONDO:0006940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A peripheral nerve lesion that involves the radial nerve.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial neuropathy","termid":"MONDO:0001459"},{"relation_name":"is_a","term_name":"neuritis of upper limb","termid":"MONDO:0003607"},{"relation_name":"is_a","term_name":"brachial plexus neuritis","termid":"MONDO:0006682"},{"relation_name":"is_a","term_name":"peripheral nerve lesion","termid":"MONDO:0024334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"radial nerve lesion","secondary_identifiers":["ICD9:354.3","SCTID:193137006","DOID:12170","MEDGEN:102317","EFO:1001143","ICD10CM:G56.3","MedDRA:10061477","UMLS:C0154744"],"synonyms":[{"name":"lesion of radial nerve","type":"exact"},{"name":"peripheral nerve lesion of radial nerve","type":"exact"},{"name":"radial nerve lesions","type":"exact"},{"name":"radial nerve peripheral nerve lesion","type":"exact"}],"termid":"MONDO:0006940","xrefs":{"Monarch":{"xref_id":"0006940"}}}


id: GO:2000527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of myeloid dendritic cell chemotaxis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dendritic cell chemotaxis","termid":"GO:2000508"},{"relation_name":"regulates","term_name":"myeloid dendritic cell chemotaxis","termid":"GO:0002408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of myeloid dendritic cell chemotaxis","termid":"GO:2000527"}


id: GO:0046562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-glucose + O2 = D-glucono-1,5-lactone + H2O2.","definition_xrefs":["RHEA:11428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose oxidase activity","termid":"GO:0047979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"beta-D-glucose oxidase activity","secondary_identifiers":["MetaCyc:GLUCOSE-OXIDASE-RXN","EC:1.1.3.4","KEGG_REACTION:R01522"],"synonyms":[{"name":"D-glucose oxidase activity","type":"related"},{"name":"D-glucose-1-oxidase activity","type":"related"},{"name":"GOD activity","type":"related"},{"name":"beta-D-glucose:oxygen 1-oxido-reductase activity","type":"related"},{"name":"beta-D-glucose:oxygen 1-oxidoreductase activity","type":"related"},{"name":"beta-D-glucose:quinone oxidoreductase activity","type":"related"},{"name":"corylophyline","type":"related"},{"name":"deoxin-1","type":"related"},{"name":"glucose aerodehydrogenase activity","type":"related"},{"name":"glucose oxidase activity","type":"exact"},{"name":"glucose oxyhydrase activity","type":"related"},{"name":"microcid","type":"related"},{"name":"penatin","type":"related"}],"termid":"GO:0046562"}


id: PBO:0028276
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_septum","termid":"PBO:0028276"}


id: SO:0000854
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A homologous_region that is paralogous to another region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"paralogous","termid":"SO:0000859"},{"relation_name":"is_a","term_name":"homologous_region","termid":"SO:0000853"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paralogous_region","secondary_identifiers":["http://en.wikipedia.org/wiki/Paralog#Paralogy"],"synonyms":[{"name":"paralog","type":"exact"},{"name":"paralogous region","type":"exact"},{"name":"paralogue","type":"exact"}],"termid":"SO:0000854"}


id: PBO:0044715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 2 (pseudogene)","termid":"PBO:0044715"}


id: PBO:0050627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock transcription factor 2","termid":"PBO:0050627"}


id: GO:0008092
data:
  {"annotated_genes":["SJAG_01894","SJAG_04498","SJAG_01297","SJAG_03086","SJAG_01943","SJAG_02795","SJAG_02075","SJAG_03703","SJAG_00677","SJAG_00970","SJAG_00152","SJAG_02336","SJAG_00723","SJAG_02566","SJAG_02609","SJAG_02045","SJAG_00773","SJAG_03540","SJAG_00938","SJAG_04001","SJAG_02814","SJAG_03835","SJAG_01384","SJAG_01760","SJAG_02700","SJAG_04781","SJAG_01993","SJAG_00279","SJAG_01268","SJAG_03229","SJAG_04703","SJAG_04621","SJAG_03011","SJAG_02624","SJAG_04074","SJAG_02431","SJAG_03088","SJAG_01613","SJAG_04745","SJAG_00332","SJAG_04886","SJAG_03025","SJAG_01598","SJAG_04982","SJAG_00851","SJAG_00521","SJAG_01546","SJAG_02245","SJAG_01665","SJAG_03455","SJAG_02396","SJAG_02040","SJAG_03119","SJAG_01732","SJAG_04624","SJAG_03073","SJAG_01754","SJAG_02270","SJAG_03380","SJAG_04141","SJAG_04841","SJAG_00042","SJAG_00930","SJAG_01964"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[63580,67536,73111,71724,64634,72242,62271,71206,71169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003779"},{"annotations":[72337,76315,81083,73066,77495,78684,77521,81054,81696,72131,73416,79746,79367,72064,78270,77980,81523,79699,82132,78432,80927,75326,76900,78606,81971,76846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051015"},{"annotations":[79203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003786"},{"annotations":[73951,77490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003785"},{"annotations":[68918,78689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048487"},{"annotations":[68921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005519"},{"annotations":[62341,60162,68128,63299,75791,71002,79092,77887,65393,76062,59726,79117,78200,65013,80775,70260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008017"},{"annotations":[73538,73108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051011"},{"annotations":[70387,72675,81946,66944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051010"},{"annotations":[73606,81912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032036"}]},"cv_name":"molecular_function","definition":"Binding to a protein component of a cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":64,"genes_by_uniquename":{"SJAG_00042":null,"SJAG_00152":null,"SJAG_00279":null,"SJAG_00332":null,"SJAG_00521":null,"SJAG_00677":null,"SJAG_00723":null,"SJAG_00773":null,"SJAG_00851":null,"SJAG_00930":null,"SJAG_00938":null,"SJAG_00970":null,"SJAG_01268":null,"SJAG_01297":null,"SJAG_01384":null,"SJAG_01546":null,"SJAG_01598":null,"SJAG_01613":null,"SJAG_01665":null,"SJAG_01732":null,"SJAG_01754":null,"SJAG_01760":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01964":null,"SJAG_01993":null,"SJAG_02040":null,"SJAG_02045":null,"SJAG_02075":null,"SJAG_02245":null,"SJAG_02270":null,"SJAG_02336":null,"SJAG_02396":null,"SJAG_02431":null,"SJAG_02566":null,"SJAG_02609":null,"SJAG_02624":null,"SJAG_02700":null,"SJAG_02795":null,"SJAG_02814":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03073":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03229":null,"SJAG_03380":null,"SJAG_03455":null,"SJAG_03540":null,"SJAG_03703":null,"SJAG_03835":null,"SJAG_04001":null,"SJAG_04074":null,"SJAG_04141":null,"SJAG_04498":null,"SJAG_04621":null,"SJAG_04624":null,"SJAG_04703":null,"SJAG_04745":null,"SJAG_04781":null,"SJAG_04841":null,"SJAG_04886":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cytoskeletal protein binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000117":null},"termid":"GO:0008092","terms_by_termid":{"GO:0003779":null,"GO:0003785":null,"GO:0003786":null,"GO:0005519":null,"GO:0008017":null,"GO:0032036":null,"GO:0048487":null,"GO:0051010":null,"GO:0051011":null,"GO:0051015":null}}


id: GO:0102626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-costunolide + O2 + reduced [NADPH--hemoprotein reductase] = H+ + H2O + oxidized [NADPH--hemoprotein reductase] + parthenolide.","definition_xrefs":["RHEA:61320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"parthenolide synthase activity","secondary_identifiers":["MetaCyc:RXN-15531"],"termid":"GO:0102626"}


id: GO:0062198
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A region of heterochromatin associated with sites in rDNA repeats where replication forks pause.","definition_xrefs":["PMID:25417108"],"gene_count":0,"genotype_count":0,"name":"obsolete rDNA replication pause site heterochromatin (obsolete GO:0062198)","termid":"GO:0062198"}


id: MONDO:0004027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete embryonal cancer (obsolete MONDO:0004027)","termid":"MONDO:0004027","xrefs":{"Monarch":{"xref_id":"0004027"}}}


id: GO:0046185
data:
  {"annotated_genes":["SJAG_01596","SJAG_05256","SJAG_00281","SJAG_02106","SJAG_04726","SJAG_02988","SJAG_01457","SJAG_04404","SJAG_01432","SJAG_04674","SJAG_02960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97547,80085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"},{"annotations":[103051,107118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009436"},{"annotations":[74791,76421,104811,61967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"},{"annotations":[61717,107078,59919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061727"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00281":null,"SJAG_01432":null,"SJAG_01457":null,"SJAG_01596":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null,"SJAG_05256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aldehyde catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"aldehyde breakdown","type":"exact"},{"name":"aldehyde catabolism","type":"exact"},{"name":"aldehyde degradation","type":"exact"}],"termid":"GO:0046185","terms_by_termid":{"GO:0009436":null,"GO:0019243":null,"GO:0046294":null,"GO:0061727":null}}


id: MONDO:0017651
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary myoclonus (obsolete MONDO:0017651)","secondary_identifiers":["Orphanet:306750"],"termid":"MONDO:0017651","xrefs":{"Monarch":{"xref_id":"0017651"}}}


id: GO:0106030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The collection of neuronal projections into a bundle of rods, known as a fascicle.","definition_xrefs":["PMID:12761826","GOC:bc.","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection development","termid":"GO:0031175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron projection fasciculation","termid":"GO:0106030"}


id: GO:0001316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring during the process of replicative cell aging as a result of reactive oxygen species, where the change varies according to the age of the cell or organism.","definition_xrefs":["GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete age-dependent response to reactive oxygen species involved in replicative cell aging (obsolete GO:0001316)","synonyms":[{"name":"age-dependent response to AOS during replicative cell aging","type":"exact"},{"name":"age-dependent response to ROI during replicative cell aging","type":"related"},{"name":"age-dependent response to ROS during replicative cell aging","type":"related"},{"name":"age-dependent response to active oxygen species during replicative cell aging","type":"related"},{"name":"age-dependent response to reactive oxidative species during replicative cell aging","type":"exact"},{"name":"age-dependent response to reactive oxygen intermediate during replicative cell aging","type":"related"},{"name":"age-dependent response to reactive oxygen species during replicative cell ageing","type":"exact"},{"name":"age-dependent response to reactive oxygen species during replicative cell aging","type":"related"}],"termid":"GO:0001316"}


id: FYPO:0008052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in mitosis in which the dimethylation of lysine at position 4 of histone H3 occurs to a greater extent than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K4 dimethylation during vegetative growth","termid":"FYPO:0005225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0001320","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K4 dimethylation during mitosis","termid":"FYPO:0008052"}


id: GO:0099611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the potential at which an axon potential is triggered.","definition_xrefs":["ISBN:978-0071390118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of action potential","termid":"GO:0098900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of action potential firing threshold","termid":"GO:0099611"}


id: PBO:0059140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 7","termid":"PBO:0059140"}


id: FYPO:0002924
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing maltose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth on maltose carbon source","synonyms":[{"name":"decreased growth on maltose carbon source","type":"broad"},{"name":"decreased vegetative cell growth on maltose carbon source","type":"exact"},{"name":"growth defects, growth inhibition in maltose-based medium","type":"related"},{"name":"reduced cell growth on maltose carbon source","type":"exact"},{"name":"slow cell growth on maltose carbon source","type":"narrow"}],"termid":"FYPO:0002924"}


id: MOD:00556
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrolein addition +94","synonyms":[{"name":"Acrolein addition +94","type":"related"},{"name":"Delta:H(6)C(6)O(1)","type":"related"}],"termid":"MOD:00556"}


id: GO:0015715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of nucleotide sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transport","termid":"GO:0015748"},{"relation_name":"is_a","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"nucleotide-sulfate transport","synonyms":[{"name":"nucleotide-sulphate transport","type":"exact"}],"termid":"GO:0015715"}


id: GO:0106326
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H+ + UDP.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete acetylgalactosaminyl-O-glycosyl-threonyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity (obsolete GO:0106326)","termid":"GO:0106326"}


id: PBO:0078782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 7-1","termid":"PBO:0078782"}


id: PBO:0079920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase complex III subunit VII","termid":"PBO:0079920"}


id: PBO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S28 (predicted)","termid":"PBO:0002460"}


id: PBO:0057617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1183","termid":"PBO:0057617"}


id: CHEBI:16976
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hygromycin B","termid":"CHEBI:16976"}


id: PATO:0001675
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An efficiency which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"efficient","termid":"PATO:0001678"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased efficiency","synonyms":[{"name":"low efficiency","type":"exact"}],"termid":"PATO:0001675"}


id: PBO:0016087
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by tomato RAN2A","termid":"PBO:0016087"}


id: FYPO:0007435
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is inviable, elongated, i.e. has a greater length and length:diameter ratio than normal, and has one nucleus when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:12399381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated cell during nitrogen starvation","termid":"FYPO:0000998"},{"relation_name":"output_of","term_name":"abnormal cell cycle arrest at mitotic G2/M phase transition during nitrogen starvation","termid":"FYPO:0001001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000005","FYPO:0000631"],"is_obsolete":false,"name":"inviable elongated mononucleate cell during nitrogen starvation","synonyms":[{"name":"inviable elongated mononucleate cell during nitrogen depletion","type":"exact"},{"name":"inviable elongated mononucleate cell during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0007435"}


id: PR:O59823
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A V-type proton ATPase subunit D that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11671:SF0","PRO:DNx","OMA:SCHPO05013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit D (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.03","secondary_identifiers":["UniProtKB:O59823"],"synonyms":[{"name":"Spom972h-ATP6V1D","type":"exact"},{"name":"V-ATPase subunit D (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit D (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59823"}


id: GO:0022027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:cls","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration","termid":"GO:0007097"},{"relation_name":"part_of","term_name":"cell proliferation in forebrain","termid":"GO:0021846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"interkinetic nuclear migration","termid":"GO:0022027"}


id: MONDO:0850087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome","secondary_identifiers":["GARD:22484","MEDGEN:1842330","Orphanet:620363","UMLS:C5681826"],"termid":"MONDO:0850087","xrefs":{"Monarch":{"xref_id":"0850087"}}}


id: GO:0032109
data:
  {"annotated_genes":["SJAG_02292","SJAG_02331"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68346,71311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903833"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a response to nutrient levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to nutrient levels","termid":"GO:0032107"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"response to nutrient levels","termid":"GO:0031667"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02292":null,"SJAG_02331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to nutrient levels","references_by_uniquename":{"GO_REF:0000117":null},"synonyms":[{"name":"activation of response to nutrient levels","type":"narrow"},{"name":"stimulation of response to nutrient levels","type":"narrow"},{"name":"up regulation of response to nutrient levels","type":"exact"},{"name":"up-regulation of response to nutrient levels","type":"exact"},{"name":"upregulation of response to nutrient levels","type":"exact"}],"termid":"GO:0032109","terms_by_termid":{"GO:1903833":null}}


id: PR:Q69Z14
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vma9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q69Z14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit e (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.16","synonyms":[{"name":"Spom972h-vma9","type":"exact"},{"name":"V-ATPase subunit e (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit e (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q69Z14"}


id: MONDO:0016114
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A bulbospinal muscular atrophy that occurs during childhood.","definition_xrefs":["MONDO:design_pattern"],"gene_count":0,"genotype_count":0,"name":"obsolete bulbospinal muscular atrophy of childhood (obsolete MONDO:0016114)","secondary_identifiers":["Orphanet:206704"],"synonyms":[{"name":"bulbospinal muscular atrophy of childhood","type":"exact"},{"name":"childhood bulbospinal muscular atrophy","type":"exact"},{"name":"paediatric bulbospinal muscular atrophy","type":"exact"},{"name":"pediatric bulbospinal muscular atrophy","type":"exact"}],"termid":"MONDO:0016114","xrefs":{"Monarch":{"xref_id":"0016114"}}}


id: MONDO:0014633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An idiopathic generalized epilepsy characterized by onset of multiple seizure types in the first few years of life and associated with poor prognosis. Affected individuals have cognitive regression and intellectual disability and that has material basis in heterozygous mutation in the SLC6A1 gene on chromosome 3p25.","definition_xrefs":["DOID:0060475"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome with developmental and/or epileptic encephalopathy","termid":"MONDO:0800500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy with myoclonic atonic seizures","secondary_identifiers":["ICD9:345.10","SCTID:230421008","GARD:16108","icd11.foundation:951920505","OMIM:616421","UMLS:C0393702","Orphanet:1942","MEDGEN:98284"],"synonyms":[{"name":"Doose syndrome","type":"exact"},{"name":"EMAS","type":"exact"},{"name":"EMAtS","type":"exact"},{"name":"MAE","type":"exact"},{"name":"Myoclonic Atonic Epilepsy","type":"exact"},{"name":"epilepsy with myoclonic atonic seizures","type":"exact"},{"name":"epilepsy with myoclonic-astatic seizures","type":"exact"},{"name":"epilepsy with myoclonic-atonic seizures","type":"exact"},{"name":"epilepsy with myoclono-astatic crisis","type":"related"},{"name":"myoclonic astatic epilepsy","type":"related"},{"name":"myoclonic atonic epilepsy","type":"exact"},{"name":"myoclonic-astatic epilepsy in early childhood","type":"exact"},{"name":"myoclonic-atonic epilepsy","type":"exact"}],"termid":"MONDO:0014633","xrefs":{"Monarch":{"xref_id":"0014633"}}}


id: PBO:0083681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication","termid":"PBO:0083681"}


id: PBO:0028627
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_morphology_during_mitotic_interphase","termid":"PBO:0028627"}


id: MONDO:0015628
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type 2A von Willebrand disease (type 2A VWD) is a subtype of type 2 VWD characterized by a bleeding disorder associated with a decrease in the affinity of the Willebrand factor (von Willebrand factor; VWF) for platelets and the subendothelium caused by a deficiency of high molecular weight VWF multimers.","definition_xrefs":["Orphanet:166084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"von Willebrand disease 2","termid":"MONDO:0013304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"von Willebrand disease type 2A","secondary_identifiers":["UMLS:C1282968","GARD:17021","icd11.foundation:1009291548","SCTID:359714009","MEDGEN:220920","NCIT:C131686"],"synonyms":[{"name":"von Willebrand disease, type 2A","type":"exact"}],"termid":"MONDO:0015628","xrefs":{"Monarch":{"xref_id":"0015628"}}}


id: GO:0031024
data:
  {"annotated_genes":["SJAG_03264","SJAG_03052"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104340,114824],"is_not":false,"summary":null,"term":"GO:0031024"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components, including gamma-tubulin and other proteins, to form an interphase microtubule organizing center.","definition_xrefs":["GOC:mah","PMID:15068790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"microtubule organizing center organization","termid":"GO:0031023"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03052":null,"SJAG_03264":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0044085","GO:0000226"],"is_obsolete":false,"name":"interphase microtubule organizing center assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"interphase microtubule organising center biosynthesis","type":"exact"},{"name":"interphase microtubule organising center formation","type":"exact"},{"name":"interphase microtubule organizing center biogenesis","type":"related"},{"name":"interphase microtubule organizing centre assembly","type":"exact"}],"termid":"GO:0031024","terms_by_termid":{"GO:0031024":null}}


id: MOD:01646
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine removal","termid":"MOD:01646"}


id: GO:0060674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a blood vessel of the placenta over time, from its formation to the mature structure.","definition_xrefs":["PMID:16916377","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel development","termid":"GO:0001568"},{"relation_name":"part_of","term_name":"placenta development","termid":"GO:0001890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"placenta blood vessel development","termid":"GO:0060674"}


id: PBO:0042134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholecystokinin","termid":"PBO:0042134"}


id: PBO:0117434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF473 antisense RNA 1","termid":"PBO:0117434"}


id: GO:0098538
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the transport vesicle membrane that faces the lumen.","definition_xrefs":["GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"transport vesicle membrane","termid":"GO:0030658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"lumenal side of transport vesicle membrane","synonyms":[{"name":"internal side of transport vesicle membrane","type":"exact"}],"termid":"GO:0098538"}


id: PATO:0000667
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000667 liquid substance value (obsolete PATO:0000667)","termid":"PATO:0000667"}


id: GO:1900382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of thiamine biosynthetic process.","definition_xrefs":["GOC:mah","GOC:TermGenie","PMID:16874521"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900382)","synonyms":[{"name":"regulation of thiamin biosynthetic process by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine anabolism by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine biosynthesis by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine formation by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine synthesis by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900382"}


id: MONDO:0010503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Bartter syndrome in which the cause of the disease is a mutation in the MAGED2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bartter syndrome","termid":"MONDO:0015231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Bartter disease type 5","secondary_identifiers":["MEDGEN:934787","OMIM:300971","Orphanet:570371","UMLS:C4310820","DOID:0110147","GARD:22308"],"synonyms":[{"name":"BARTS5","type":"exact"},{"name":"Bartter syndrome caused by mutation in MAGED2","type":"exact"},{"name":"Bartter syndrome, type 5, antenatal, transient","type":"exact"},{"name":"Bartter syndrome, type 5, antenatal, transient, X-linked recessive","type":"exact"},{"name":"MAGED2 Bartter syndrome","type":"exact"}],"termid":"MONDO:0010503","xrefs":{"Monarch":{"xref_id":"0010503"}}}


id: PBO:0085167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-glycosylated covalently-bound cell wall protein; required for cell wall stability; expression is cell cycle regulated, peaking in M/G1 and also subject to regulation by the cell integrity pathway; coding sequence contains length polymorphisms in different strains; PIR3 has a paralog, HSP150, that arose from the whole genome duplication","termid":"PBO:0085167"}


id: PR:Q9HDY3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1A10.07c gene.","definition_xrefs":["UniProtKB:Q9HDY3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane protein PB1A10.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.07c","synonyms":[{"name":"Spom972h-SPAPB1A10.07c","type":"exact"}],"termid":"PR:Q9HDY3"}


id: SO:1000067
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation causing a disruption of the translational reading frame, due to the deletion of a nucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000067 sequence_variant_causing_minus_1_frameshift (obsolete SO:1000067)","synonyms":[{"name":"minus 1 frameshift mutation","type":"exact"},{"name":"sequence variant causing minus 1 frameshift","type":"exact"}],"termid":"SO:1000067"}


id: PBO:0063716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 5 pseudogene 4","termid":"PBO:0063716"}


id: PBO:0040748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain cytoplasmic RNA 1, pseudogene 3","termid":"PBO:0040748"}


id: PBO:0079126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teashirt zinc finger homeobox 2","termid":"PBO:0079126"}


id: PBO:0109039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFT57 pseudogene 1","termid":"PBO:0109039"}


id: PBO:0051225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-1-1 (pseudogene)","termid":"PBO:0051225"}


id: GO:0106300
data:
  {"annotated_genes":["SJAG_02223","SJAG_00406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100316,108120],"is_not":false,"summary":null,"term":"GO:0106300"}]},"cv_name":"biological_process","definition":"The removal of covalent cross-link between DNA and a protein.","definition_xrefs":["PMID:31921408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair","termid":"GO:0006281"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00406":null,"SJAG_02223":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006281","GO:0006259"],"is_obsolete":false,"name":"protein-DNA covalent cross-linking repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"resolution of protein-DNA covalent cross-linking","type":"exact"}],"termid":"GO:0106300","terms_by_termid":{"GO:0106300":null}}


id: PBO:0000864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aromatic aminotransferase (predicted)","termid":"PBO:0000864"}


id: GO:0000159
data:
  {"annotated_genes":["SJAG_03681","SJAG_03353","SJAG_00526","SJAG_00229","SJAG_00600","SJAG_01270","SJAG_00078"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[63855,66321,73059,73668,77786,80190,106517],"is_not":false,"summary":null,"term":"GO:0000159"}]},"cv_name":"cellular_component","definition":"A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit.","definition_xrefs":["ISBN:0198547684","PMID:17245430","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase complex","termid":"GO:0008287"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00229":null,"SJAG_00526":null,"SJAG_00600":null,"SJAG_01270":null,"SJAG_03353":null,"SJAG_03681":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protein phosphatase type 2A complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"PP2A complex","type":"exact"},{"name":"PP2A-pi","type":"narrow"},{"name":"PP2a-protector","type":"narrow"},{"name":"protein phosphatase 2 complex","type":"related"}],"termid":"GO:0000159","terms_by_termid":{"GO:0000159":null}}


id: MONDO:0019679
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachydactyly type A7 (Smorgasbord type) is a form of brachydactyly that presents with the characteristic features of brachydactyly type A2 (shortening of the middle phalanges of the index finger and, sometimes, of the little finger) and type D (shortening of the distal phalanx of the thumb) plus various additional features.","definition_xrefs":["Orphanet:93397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brachydactyly","termid":"MONDO:0021004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly type A7","secondary_identifiers":["UMLS:C4303991","GARD:984","MEDGEN:929660","icd11.foundation:1487696553","SCTID:720571006"],"synonyms":[{"name":"brachydactyly Smorgasbord type","type":"related"},{"name":"brachydactyly, Smorgasbord type","type":"exact"}],"termid":"MONDO:0019679","xrefs":{"Monarch":{"xref_id":"0019679"}}}


id: GO:0047544
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: biphenyl-2-ol + H+ + NADH + O2 = biphenyl-2,3-diol + H2O + NAD+. Also converts 2,2'-dihydroxybiphenyl into 2,2',3-trihydroxy-biphenyl.","definition_xrefs":["EC:1.14.13.44"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2-hydroxybiphenyl 3-monooxygenase (NADH) activity","secondary_identifiers":["UM-BBD_reactionID:r1423","KEGG_REACTION:R03964"],"synonyms":[{"name":"2-hydroxybiphenyl,NADH:oxygen oxidoreductase (3-hydroxylating)","type":"related"}],"termid":"GO:0047544"}


id: PBO:0083267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 85% of ORF overlaps the uncharacterized gene CUE5; deletion in cyr1 mutant results in loss of stress resistance","termid":"PBO:0083267"}


id: PBO:0073364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family H member 1","termid":"PBO:0073364"}


id: PBO:0084604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YOR088W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YOR087W","termid":"PBO:0084604"}


id: GO:0001920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of receptor recycling.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor recycling","termid":"GO:0001919"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of signaling","termid":"GO:0023057"},{"relation_name":"negatively_regulates","term_name":"receptor recycling","termid":"GO:0001881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of receptor recycling","synonyms":[{"name":"down regulation of receptor recycling","type":"exact"},{"name":"down-regulation of receptor recycling","type":"exact"},{"name":"downregulation of receptor recycling","type":"exact"},{"name":"inhibition of receptor recycling","type":"narrow"}],"termid":"GO:0001920"}


id: PBO:0051188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3/OR16-6 (pseudogene)","termid":"PBO:0051188"}


id: PBO:0078873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 7","termid":"PBO:0078873"}


id: PBO:0034501
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_UV_during_late_mitotic_G2_phase","termid":"PBO:0034501"}


id: FYPO:0007805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the ATP hydrolysis-dependent activity that loads H3-H4 histone dimers onto DNA is absent.","definition_xrefs":["PomBase:mah","PMID:31848341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal H3-H4 dimer loading onto DNA","termid":"FYPO:0007804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000002","FYPO:0000652","FYPO:0000641"],"is_obsolete":false,"name":"abolished H3-H4 dimer loading onto DNA","synonyms":[{"name":"abolished H3-H4 dimer loading activity","type":"exact"},{"name":"abolished histone H3-H4 dimer loading activity","type":"exact"}],"termid":"FYPO:0007805"}


id: GO:0006360
data:
  {"annotated_genes":["SJAG_03689","SJAG_05187","SJAG_01712","SJAG_00731","SJAG_03578","SJAG_02608","SJAG_03897","SJAG_01562","SJAG_01313","SJAG_01764","SJAG_02101","SJAG_03144","SJAG_00692","SJAG_02871","SJAG_03956","SJAG_01765","SJAG_04766","SJAG_00421","SJAG_04083","SJAG_00943","SJAG_04855","SJAG_01698","SJAG_02747","SJAG_00139","SJAG_01444","SJAG_04261","SJAG_04106","SJAG_01149","SJAG_00512","SJAG_03931","SJAG_00202","SJAG_01744","SJAG_05331","SJAG_01128","SJAG_04257","SJAG_03468","SJAG_02813","SJAG_02070","SJAG_02922","SJAG_02653"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64491,80662,107303,110131,116601],"is_not":false,"summary":null,"term":"GO:0006360"},{"annotations":[81810,60319,77674,81120,81181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042790"},{"annotations":[81420,78297,79980,80484,75129],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0045943"},{"annotations":[110445],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006356"},{"annotations":[70098,79441,65281],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001188"},{"annotations":[104293,116276,98402,118048],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006363"},{"annotations":[77138,105358,66382,106912,117590,69412,94049,107820,76490,79443,65455,72057,65293,58688,97226,63075,116277],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006362"},{"annotations":[73487,97590,111785,109720,74041,63621,81122,95184],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006361"}]},"cv_name":"biological_process","definition":"The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.","definition_xrefs":["GOC:txnOH","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription","termid":"GO:0006351"}],"gene_count":40,"genes_by_uniquename":{"SJAG_00139":null,"SJAG_00202":null,"SJAG_00421":null,"SJAG_00512":null,"SJAG_00692":null,"SJAG_00731":null,"SJAG_00943":null,"SJAG_01128":null,"SJAG_01149":null,"SJAG_01313":null,"SJAG_01444":null,"SJAG_01562":null,"SJAG_01698":null,"SJAG_01712":null,"SJAG_01744":null,"SJAG_01764":null,"SJAG_01765":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02608":null,"SJAG_02653":null,"SJAG_02747":null,"SJAG_02813":null,"SJAG_02871":null,"SJAG_02922":null,"SJAG_03144":null,"SJAG_03468":null,"SJAG_03578":null,"SJAG_03689":null,"SJAG_03897":null,"SJAG_03931":null,"SJAG_03956":null,"SJAG_04083":null,"SJAG_04106":null,"SJAG_04257":null,"SJAG_04261":null,"SJAG_04766":null,"SJAG_04855":null,"SJAG_05187":null,"SJAG_05331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467"],"is_obsolete":false,"name":"transcription by RNA polymerase I","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-73864"],"synonyms":[{"name":"RNA polymerase I transcription factor activity","type":"related"},{"name":"transcription from Pol I promoter","type":"exact"},{"name":"transcription from RNA polymerase I promoter","type":"exact"}],"termid":"GO:0006360","terms_by_termid":{"GO:0001188":null,"GO:0006356":null,"GO:0006360":null,"GO:0006361":null,"GO:0006362":null,"GO:0006363":null,"GO:0042790":null,"GO:0045943":null}}


id: GO:0140229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-isonicotinyl-L-lysyl-[protein] + H2O = isonicotinate + L-lysyl-[protein].","definition_xrefs":["PMID:34545082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"histone isonicotinyllysine deisonicotinylase activity","termid":"GO:0140229"}


id: GO:0061231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a mesonephric glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the mesonephric glomerulus vasculature and ends with the mature structure. The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulus vasculature development","termid":"GO:0072012"},{"relation_name":"part_of","term_name":"mesonephric glomerulus development","termid":"GO:0061224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerulus vasculature development","termid":"GO:0061231"}


id: GO:0006815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete sodium/potassium transport (obsolete GO:0006815)","synonyms":[{"name":"sodium/potassium transport","type":"exact"}],"termid":"GO:0006815"}


id: PBO:0081524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 433","termid":"PBO:0081524"}


id: FYPO:0001884
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of Calcofluor White than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002682","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"resistance to Calcofluor White","synonyms":[{"name":"resistance to Calcofluor White during mitotic cell cycle","type":"related"},{"name":"resistance to Calcofluor White during vegetative growth","type":"exact"},{"name":"resistant to Calcofluor White","type":"exact"}],"termid":"FYPO:0001884"}


id: PBO:0005251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brefeldin A efflux transporter Bfr1","termid":"PBO:0005251"}


id: GO:1990879
data:
  {"annotated_genes":["SJAG_04245","SJAG_02362"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[64506,112419],"is_not":false,"summary":null,"term":"GO:1990879"}]},"cv_name":"cellular_component","definition":"A complex formed by the association of Cdc13 (CTC1 in mammals) with Stn1 in yeast (OBFC1 in mammals) and Ten1 protein (also TEN1 in mammals) with single-stranded telomeric DNA. The CST complex plays a role in telomere protection.","definition_xrefs":["GOC:BHF_telomere","PMID:22965356","PMID:19854130","GOC:BHF","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear telomere cap complex","termid":"GO:0000783"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02362":null,"SJAG_04245":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CST complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"CTC1-OBFC1-TEN1 complex","type":"narrow"},{"name":"Cdc13-Stn1-Ten1 complex","type":"narrow"}],"termid":"GO:1990879","terms_by_termid":{"GO:1990879":null}}


id: GO:0015538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sialate(out) + H+(out) = sialate(in) + H+(in).","definition_xrefs":["TC:2.A.1.12.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sialic acid transmembrane transporter activity","termid":"GO:0015136"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"sialic acid:proton symporter activity","secondary_identifiers":["MetaCyc:TRANS-RXN-25","Reactome:R-HSA-428585","RHEA:28987","Reactome:R-HSA-5624239"],"synonyms":[{"name":"sialic acid permease activity","type":"related"},{"name":"sialic acid:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015538"}


id: MONDO:0018698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of neuroendocrine tumor of the small intestine that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"small intestine neuroendocrine neoplasm","termid":"MONDO:0018510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"hereditary neuroendocrine tumor of small intestine","secondary_identifiers":["Orphanet:456333","MEDGEN:1826066","GARD:21899","UMLS:C5679993"],"synonyms":[{"name":"hereditary neuroendocrine tumor of small bowel","type":"exact"},{"name":"hereditary neuroendocrine tumor of the small intestine","type":"exact"},{"name":"hereditary neuroendocrine tumour of small bowel","type":"exact"},{"name":"hereditary neuroendocrine tumour of the small intestine","type":"exact"},{"name":"hereditary small intestine neuroendocrine neoplasm","type":"exact"}],"termid":"MONDO:0018698","xrefs":{"Monarch":{"xref_id":"0018698"}}}


id: MOD:01540
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ8plex-114 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-114 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01540"}


id: MONDO:0017622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital sucrase-isomaltase deficiency","termid":"MONDO:0009114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"congenital sucrase-isomaltase deficiency without sucrose intolerance","secondary_identifiers":["Orphanet:306486"],"synonyms":[{"name":"CSID without sucrose intolerance","type":"exact"},{"name":"congenital sucrose-isomaltose malabsorption without sucrose intolerance","type":"exact"},{"name":"disaccharide intolerance without sucrose intolerance","type":"exact"}],"termid":"MONDO:0017622","xrefs":{"Monarch":{"xref_id":"0017622"}}}


id: MONDO:0020045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive cerebellar ataxia due to a DNA repair defect (obsolete MONDO:0020045)","secondary_identifiers":["Orphanet:98097"],"termid":"MONDO:0020045","xrefs":{"Monarch":{"xref_id":"0020045"}}}


id: PBO:0085043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential INO80 chromatin remodeling complex subunit; deletion affects telomere maintenance via recombination","termid":"PBO:0085043"}


id: GO:0045095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intermediate filament","termid":"GO:0005882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"keratin filament","synonyms":[{"name":"acidic keratin","type":"related"},{"name":"basic/neutral keratin","type":"related"}],"termid":"GO:0045095"}


id: GO:0031814
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a P2Y4 nucleotide receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled nucleotide receptor binding","termid":"GO:0031811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"P2Y4 nucleotide receptor binding","synonyms":[{"name":"P2Y4 nucleotide receptor ligand","type":"narrow"}],"termid":"GO:0031814"}


id: GO:0090667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell in response to the presence of vascular endothelial growth factor (VEGF).","definition_xrefs":["GOC:BHF_miRNA","PMID:21885851","GOC:rph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell chemotaxis","termid":"GO:0060326"},{"relation_name":"part_of","term_name":"cellular response to vascular endothelial growth factor stimulus","termid":"GO:0035924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell chemotaxis to vascular endothelial growth factor","termid":"GO:0090667"}


id: PBO:0054213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1593","termid":"PBO:0054213"}


id: PBO:0043245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 5","termid":"PBO:0043245"}


id: PBO:0055736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leiomodin 2","termid":"PBO:0055736"}


id: PBO:0080571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDFY family member 4","termid":"PBO:0080571"}


id: PBO:0001224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-arabinono-1,4-lactone oxidase (predicted)","termid":"PBO:0001224"}


id: PBO:0002300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase (predicted)","termid":"PBO:0002300"}


id: SO:0001977
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a transcript encoding the cleavage site for a ribonuclease enzyme.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease_site","synonyms":[{"name":"ribonuclease site","type":"exact"}],"termid":"SO:0001977"}


id: GO:0004900
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with erythropoietin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"erythropoietin receptor activity","termid":"GO:0004900"}


id: GO:0008343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Feeding behavior in a fully developed and mature organism.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"},{"relation_name":"is_a","term_name":"adult behavior","termid":"GO:0030534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult feeding behavior","synonyms":[{"name":"adult feeding behaviour","type":"exact"}],"termid":"GO:0008343"}


id: GO:0070904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of L-ascorbic acid from one side of an epithelium to the other.","definition_xrefs":["GOC:mah","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete transepithelial L-ascorbic acid transport (obsolete GO:0070904)","synonyms":[{"name":"transepithelial L-ascorbate transport","type":"exact"},{"name":"transepithelial vitamin C transport","type":"exact"}],"termid":"GO:0070904"}


id: PBO:0004902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide biosynthesis protein (predicted)","termid":"PBO:0004902"}


id: GO:0099604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ions by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium channel activity","termid":"GO:0005262"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ligand-gated calcium channel activity","termid":"GO:0099604"}


id: PBO:0038627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical chemokine receptor 3","termid":"PBO:0038627"}


id: PBO:0041554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 19 open reading frame 33","termid":"PBO:0041554"}


id: PBO:0083114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase IV; undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta","termid":"PBO:0083114"}


id: MONDO:0016501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hermansky-Pudlak syndrome with pulmonary fibrosis as a complication includes two types (HPS-1 and HPS-4) of Hermansky-Pudlak syndrome (HPS), a multi-system disorder characterized by oculocutaneous albinism, bleeding diathesis and, in some cases, pulmonary fibrosis or granulomatous colitis.","definition_xrefs":["Orphanet:231500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease specific to childhood","termid":"MONDO:0017014"},{"relation_name":"is_a","term_name":"Hermansky-Pudlak syndrome","termid":"MONDO:0019312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005570","MONDO:0005093"],"is_obsolete":false,"name":"Hermansky-Pudlak syndrome with pulmonary fibrosis","secondary_identifiers":["GARD:17168","ICD10CM:E70.3","icd11.foundation:1086187623","MEDGEN:1843223","UMLS:C5679834"],"synonyms":[{"name":"HPS with pulmonary fibrosis","type":"exact"}],"termid":"MONDO:0016501","xrefs":{"Monarch":{"xref_id":"0016501"}}}


id: PBO:0073125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC11 homolog C, signal peptidase complex subunit","termid":"PBO:0073125"}


id: MONDO:0014306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vasculitis due to ADA2 deficiency is a rare, genetic, systemic and rheumatologic disease due to adenosine deaminase-2 inactivating mutations, combining variable features of autoinflammation, vasculitis, and a mild immunodeficiency. Variable clinical presentation includes chronic or recurrent systemic inflammation with fever, livedo reticularis or racemosa, early-onset ischemic or hemorrhagic strokes, peripheral neuropathy, abdominal pain, hepatosplenomegaly, portal hypertension, cutaneous polyarteritis nodosa, variable cytopenia and immunoglobulin deficiency.","definition_xrefs":["Orphanet:404553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasculitis","termid":"MONDO:0018882"},{"relation_name":"is_a","term_name":"deficiency of adenosine deaminase 2","termid":"MONDO:0100317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vasculitis due to ADA2 deficiency","secondary_identifiers":["UMLS:C3887654","GARD:12383","MEDGEN:854497","NANDO:1200995","NANDO:2200441","NANDO:2200450","OMIM:615688"],"synonyms":[{"name":"ADA2 deficiency","type":"exact"},{"name":"DADA2","type":"exact"},{"name":"PAN","type":"related"},{"name":"adenosine deaminase 2 deficiency","type":"exact"},{"name":"childhood-onset polyarteritis nodosa","type":"exact"},{"name":"polyarteritis nodosa, childhood-onset","type":"exact"},{"name":"vasculitis due to DADA2","type":"exact"},{"name":"vasculitis, autoinflammation, immunodeficiency, and hematologic defects syndrome","type":"exact"}],"termid":"MONDO:0014306","xrefs":{"Monarch":{"xref_id":"0014306"}}}


id: SO:0000684
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of nucleotide sequence targeted by a nuclease enzyme.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_binding_site","termid":"SO:0000059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclease_sensitive_site","synonyms":[{"name":"nuclease sensitive site","type":"exact"}],"termid":"SO:0000684"}


id: MONDO:1011930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder, non-human animal","termid":"MONDO:0700104"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recurrent airway obstruction, non-human animal","secondary_identifiers":["OMIA:001456"],"termid":"MONDO:1011930","xrefs":{"Monarch":{"xref_id":"1011930"}}}


id: FYPO:0006763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which cell cycle regulation mediated by the meiotic cell cycle DNA replication checkpoint does not occur under conditions that normally trigger the checkpoint signaling and response. The meiotic DNA replication checkpoint normally prevents the initiation of meiotic nuclear division until pre-meiotic DNA replication is complete.","definition_xrefs":["GO:0033315","PMID:10521402","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"meiotic cell cycle checkpoint phenotype","termid":"FYPO:0005511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000298","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished meiotic cell cycle DNA replication checkpoint","synonyms":[{"name":"abolished meiotic DNA replication checkpoint","type":"exact"},{"name":"abolished meiotic G2/MI DNA replication checkpoint","type":"exact"}],"termid":"FYPO:0006763"}


id: GO:1904341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of colon smooth muscle contraction.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24170253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"regulates","term_name":"colon smooth muscle contraction","termid":"GO:1990765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of colon smooth muscle contraction","termid":"GO:1904341"}


id: GO:0034132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 1 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of toll-like receptor 1 signaling pathway","termid":"GO:0034131"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 1 signaling pathway","termid":"GO:0034130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 1 signaling pathway","synonyms":[{"name":"negative regulation of TLR1 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 1 signalling pathway","type":"exact"}],"termid":"GO:0034132"}


id: GO:1901225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of transcription from RNA polymerase II promoter involved in heart development.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter involved in heart development (obsolete GO:1901225)","synonyms":[{"name":"down regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"narrow"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"negative regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"}],"termid":"GO:1901225"}


id: PR:Q9P7B2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps802 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7B2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S8-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC521.05","synonyms":[{"name":"Spom972h-rps802","type":"exact"}],"termid":"PR:Q9P7B2"}


id: PR:P05734
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1901 gene.","definition_xrefs":["UniProtKB:P05734","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L19-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.02","synonyms":[{"name":"Spom972h-rpl1901","type":"exact"},{"name":"YL15 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P05734"}


id: PBO:0063480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide isomerase like, testis expressed","termid":"PBO:0063480"}


id: GO:0160048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of fusing together the edges of a craniofacial suture.","definition_xrefs":["PMID:33842480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone morphogenesis","termid":"GO:0060349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"craniofacial suture closure","termid":"GO:0160048"}


id: PBO:0027140
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_menadione","termid":"PBO:0027140"}


id: PBO:0033758
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-asymmetric_gamma-tubulin_complex_localization_to_single_mitotic_spindle_pole_body","termid":"PBO:0033758"}


id: PBO:0045681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 1","termid":"PBO:0045681"}


id: MONDO:0010749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by short stature, trigonocephaly and developmental delay. It has been described in three males. Moderate intellectual deficit was reported in one of the males and the other two patients displayed psychomotor retardation. X-linked transmission has been suggested but autosomal recessive inheritance can not be ruled out.","definition_xrefs":["Orphanet:3369"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trigonocephaly-short stature-developmental delay syndrome","secondary_identifiers":["MEDGEN:374138","OMIM:314320","GARD:243","MESH:C536620","SCTID:733066002","UMLS:C1839125"],"synonyms":[{"name":"Say Meyer syndrome","type":"related"},{"name":"Say-Meyer syndrome","type":"exact"},{"name":"trigonocephaly with short stature and developmental delay","type":"related"},{"name":"trigonocephaly, short stature and developmental delay","type":"related"},{"name":"trigonocephaly, short stature, and retarded psychomotor development","type":"related"}],"termid":"MONDO:0010749","xrefs":{"Monarch":{"xref_id":"0010749"}}}


id: PBO:0057791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3117","termid":"PBO:0057791"}


id: PBO:0121062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin like 1","termid":"PBO:0121062"}


id: PBO:0062876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase with linear linkage specificity like","termid":"PBO:0062876"}


id: PBO:0044674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDHD domain containing 1","termid":"PBO:0044674"}


id: MONDO:0002154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection that is caused by Trichomonas.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protozoa infectious disease","termid":"MONDO:0002428"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichomoniasis","secondary_identifiers":["ICD9:131.8","ICD9:131.9","MESH:D014245","NCIT:C35720","SCTID:56335008","MEDGEN:52838","icd11.foundation:1220564554","UMLS:C0040921","ICD10WHO:A59","DOID:1947","ICD10CM:A59","ICD9:131"],"synonyms":[{"name":"Trichomonas infection","type":"exact"},{"name":"infections, Trichomonas","type":"related"}],"termid":"MONDO:0002154","xrefs":{"Monarch":{"xref_id":"0002154"}}}


id: PBO:0071907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 46","termid":"PBO:0071907"}


id: PBO:0041429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 76","termid":"PBO:0041429"}


id: MONDO:0013533
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperlipidemia due to hepatic triacylglycerol lipase deficiency is a rare, genetic hyperalphalipoproteinemia characterized by elevated plasma cholesterol and triglyceride (TG) levels with a marked TG enrichment of low- and high-density lipoproteins (HDL), presence of circulating beta-very low density lipoproteins and elevated HDL cholesterol levels, in the presence of a very low, or undetectable, postheparin plasma hepatic lipase activity. Premature atherosclerosis and/or coronary heart disease may be associated.","definition_xrefs":["Orphanet:140905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial hyperlipidemia","termid":"MONDO:0001336"},{"relation_name":"is_a","term_name":"hyperalphalipoproteinemia","termid":"MONDO:0015903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"hyperlipidemia due to hepatic triglyceride lipase deficiency","secondary_identifiers":["MEDGEN:462816","GARD:12864","OMIM:614025","SCTID:720940008","UMLS:C3151466"],"synonyms":[{"name":"HL deficiency","type":"related"},{"name":"hepatic lipase deficiency","type":"related"},{"name":"hyperlipidemia due to HL deficiency","type":"exact"},{"name":"hyperlipidemia due to HTGL deficiency","type":"exact"},{"name":"hyperlipidemia due to hepatic lipase deficiency","type":"exact"},{"name":"hyperlipidemia due to hepatic triacylglycerol lipase deficiency","type":"related"},{"name":"lipc deficiency","type":"related"}],"termid":"MONDO:0013533","xrefs":{"Monarch":{"xref_id":"0013533"}}}


id: GO:0055036
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a virion.","definition_xrefs":["GOC:rph","GOC:jid","PMID:213106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"virion membrane","termid":"GO:0055036"}


id: GO:0018014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The methylation of the N-terminal methionine of proteins to form the derivative N-methyl-L-methionine.","definition_xrefs":["RESID:AA0064"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-methionine methylation (obsolete GO:0018014)","termid":"GO:0018014"}


id: PBO:0086265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that stimulates strand exchange; stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad55p","termid":"PBO:0086265"}


id: MONDO:0044261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete menoq1 (obsolete MONDO:0044261)","secondary_identifiers":["OMIM:300488"],"synonyms":[{"name":"MENOQ1","type":"related"},{"name":"menopause, natural, AGE AT, quantitative trait locus 1","type":"related"},{"name":"menopause, natural, age at, QTL1, X-linked dominant","type":"exact"}],"termid":"MONDO:0044261","xrefs":{"Monarch":{"xref_id":"0044261"}}}


id: PBO:0052867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-10","termid":"PBO:0052867"}


id: PBO:0016959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flocculin Pfl2","termid":"PBO:0016959"}


id: GO:0048322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to become an axial mesoderm cell.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate commitment","termid":"GO:0001710"},{"relation_name":"part_of","term_name":"axial mesodermal cell differentiation","termid":"GO:0048321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axial mesodermal cell fate commitment","synonyms":[{"name":"axial mesoderm cell fate commitment","type":"exact"}],"termid":"GO:0048322"}


id: PBO:0083776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential nuclear protein; required for biogenesis of the small ribosomal subunit; has a possible role in the osmoregulatory glycerol response; putative homolog of human NOM1 which is implicated in acute myeloid leukemia","termid":"PBO:0083776"}


id: GO:0031879
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 2 somatostatin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatostatin receptor binding","termid":"GO:0031877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 2 somatostatin receptor binding","synonyms":[{"name":"type 2 somatostatin receptor ligand","type":"narrow"}],"termid":"GO:0031879"}


id: PBO:0083280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the essential gene UGP1 gene and uncharacterized ORF YKL037W","termid":"PBO:0083280"}


id: GO:0043701
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tissue-specific, membrane-bounded cytoplasmic organelle within which an unknown blue pigment is localized. Cyanosomes are synthesized in cyanophores and are blue in appearance.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule","termid":"GO:0048770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"cyanosome","termid":"GO:0043701"}


id: GO:0006595
data:
  {"annotated_genes":["SJAG_03288","SJAG_04481","SJAG_03632","SJAG_04130","SJAG_04904","SJAG_04546","SJAG_00043"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102791],"is_not":false,"summary":null,"term":"GO:0006595"},{"annotations":[113228],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0170066"},{"annotations":[77699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"},{"annotations":[89410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009447"},{"annotations":[76949,79799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008295"},{"annotations":[72793],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008216"},{"annotations":[79798,104772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006597"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine metabolic process","termid":"GO:0006576"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_03288":null,"SJAG_03632":null,"SJAG_04130":null,"SJAG_04481":null,"SJAG_04546":null,"SJAG_04904":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polyamine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-351202"],"synonyms":[{"name":"polyamine metabolism","type":"exact"}],"termid":"GO:0006595","terms_by_termid":{"GO:0006595":null,"GO:0006597":null,"GO:0008216":null,"GO:0008295":null,"GO:0009447":null,"GO:0033387":null,"GO:0170066":null}}


id: PBO:0073400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 3","termid":"PBO:0073400"}


id: GO:0003113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine released from nerve endings increases the rate of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heart rate by norepinephrine","termid":"GO:0003066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart rate by neuronal norepinephrine","synonyms":[{"name":"positive regulation of heart rate by neuronal noradrenaline","type":"exact"}],"termid":"GO:0003113"}


id: GO:0100064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates filamentous growth of a population of unicellular organisms in response to starvation.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter (obsolete GO:0100064)","termid":"GO:0100064"}


id: PATO:0000033
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/concentration"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concentration of","synonyms":[{"name":"concentration","type":"exact"}],"termid":"PATO:0000033"}


id: GO:0034895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pryidine-3,4-diol + O2 = 3-(N-formyl)-formiminopyruvate.","definition_xrefs":["UM-BBD_reactionID:r1398"],"gene_count":0,"genotype_count":0,"name":"obsolete pyridine-3,4-diol dioxygenase activity (obsolete GO:0034895)","termid":"GO:0034895"}


id: MONDO:0003993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of embryonal rhabdomyosarcoma occurring in female children. The neoplasm arises from the vagina. It is characterized by the formation of a cambium layer in the affected tissue and polypoid nodules with an abundant myxoid stroma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood botryoid rhabdomyosarcoma","termid":"MONDO:0003992"},{"relation_name":"is_a","term_name":"botryoid-type embryonal rhabdomyosarcoma of the vagina","termid":"MONDO:0003994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood vagina botryoid rhabdomyosarcoma","secondary_identifiers":["DOID:6787","MEDGEN:232055","UMLS:C1332945","NCIT:C35556"],"synonyms":[{"name":"botryoid-type embryonal rhabdomyosarcoma of the vagina of childhood","type":"exact"},{"name":"childhood botryoid-type embryonal rhabdomyosarcoma of the vagina","type":"exact"},{"name":"childhood sarcoma Botryoides of the vagina","type":"exact"},{"name":"paediatric botryoid-type embryonal rhabdomyosarcoma of the vagina","type":"exact"},{"name":"pediatric botryoid-type embryonal rhabdomyosarcoma of the vagina","type":"exact"},{"name":"vaginal childhood botryoid-type embryonal rhabdomyosarcoma","type":"exact"},{"name":"vaginal childhood sarcoma Botryoides","type":"exact"}],"termid":"MONDO:0003993","xrefs":{"Monarch":{"xref_id":"0003993"}}}


id: SO:0001079
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_structural_region","termid":"SO:0001070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_structural_motif","secondary_identifiers":["BS:0000338","http://en.wikipedia.org/wiki/Structural_motif"],"synonyms":[{"name":"polypeptide structural motif","type":"related"},{"name":"structural_motif","type":"related"}],"termid":"SO:0001079"}


id: GO:0031876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a secretin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"secretin receptor binding","synonyms":[{"name":"secretin receptor ligand","type":"narrow"}],"termid":"GO:0031876"}


id: PBO:0069791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1077, pseudogene","termid":"PBO:0069791"}


id: PBO:0084782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial phenylalanyl-tRNA synthetase; active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase","termid":"PBO:0084782"}


id: PBO:0034740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"greatwall kinase Ppk18","termid":"PBO:0034740"}


id: PBO:0050058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, Y (pseudogene)","termid":"PBO:0050058"}


id: PBO:0087935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational elongation factor EF-1 alpha; GTP-bound active form, binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides; moonlighting function as an actin binding and bundling protein; association with GTPase Rho1p on the vacuolar membrane may facilitate F-actin remodeling; involved in tRNA re-export from the nucleus; Tef2p-RFP levels increase during replicative aging","termid":"PBO:0087935"}


id: PBO:0051652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine monophosphate dehydrogenase 1 pseudogene 7","termid":"PBO:0051652"}


id: GO:0035003
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The most apical region of the lateral plasma membrane of an invertebrate epithelial cell. The subapical complex lies above the zonula adherens and the septate junction, and is comparable to the position of the tight junction of vertebrate cells.","definition_xrefs":["PMID:12500938","PMID:11752566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"apical junction complex","termid":"GO:0043296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"subapical complex","synonyms":[{"name":"SAC","type":"broad"}],"termid":"GO:0035003"}


id: MONDO:0021100
data:
  {"annotated_genes":["SJAG_04394","SJAG_02426","SJAG_03453","SJAG_02460","SJAG_00079","SJAG_03720","SJAG_04206","SJAG_00757","SJAG_04502","SJAG_01410"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88177,89332,88179,89328,88178,88180,89331,89329,89330,88181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0016419"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm of the breast parenchyma. It can originate from the ducts, lobules or the breast adipose tissue. Breast neoplasms are much more common in females than males.","definition_xrefs":["NCIT:C2910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast disorder","termid":"MONDO:0002657"},{"relation_name":"is_a","term_name":"neoplasm of thorax","termid":"MONDO:0021350"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00079":null,"SJAG_00757":null,"SJAG_01410":null,"SJAG_02426":null,"SJAG_02460":null,"SJAG_03453":null,"SJAG_03720":null,"SJAG_04206":null,"SJAG_04394":null,"SJAG_04502":null},"genotype_count":0,"is_obsolete":false,"name":"breast neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:126926005","MESH:D001943","ICD9:239.3","UMLS:C1458155","EFO:0003869","ONCOTREE:BREAST","MEDGEN:264172"],"synonyms":[{"name":"breast neoplasm","type":"exact"},{"name":"breast neoplasm (disease)","type":"exact"},{"name":"breast tumor","type":"exact"},{"name":"breast tumour","type":"exact"},{"name":"neoplasm of breast","type":"exact"},{"name":"neoplasm of the breast","type":"exact"},{"name":"neoplasm, breast","type":"exact"},{"name":"tumor of breast","type":"exact"},{"name":"tumor of the breast","type":"exact"},{"name":"tumour of breast","type":"exact"},{"name":"tumour of the breast","type":"exact"}],"termid":"MONDO:0021100","terms_by_termid":{"MONDO:0016419":null},"xrefs":{"Monarch":{"xref_id":"0021100"}}}


id: PBO:0053829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1094","termid":"PBO:0053829"}


id: PATO:0001780
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition.","definition_xrefs":["Wiikipedia:Wiikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrophic","synonyms":[{"name":"dystrophied","type":"exact"},{"name":"dystrophy","type":"related"}],"termid":"PATO:0001780"}


id: PATO:0002369
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viviparous organism that has given birth two or more times.","definition_xrefs":["wiki:http://en.wikipedia.org/wiki/Parity_(biology)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parity","termid":"PATO:0002370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiparous","termid":"PATO:0002369"}


id: PBO:0072993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm polycomb group protein like 2","termid":"PBO:0072993"}


id: PBO:0038764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3 pseudogene 1","termid":"PBO:0038764"}


id: PBO:0017492
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_inferred","termid":"PBO:0017492"}


id: PBO:0030081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cell_tip","termid":"PBO:0030081"}


id: PBO:0087637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the eukaryotic translation initiation factor 3 (eIF3); component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation; can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant; eIF3 is also involved in programmed stop codon readthrough","termid":"PBO:0087637"}


id: GO:0001896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A programmed cell death process observed in bacteria and filamentous fungi and leading to spontaneous death by lysis. Examples are lysis of the mother cell during sporulation of Bacillus subtilis and self-degradation of fungal cells in Aspergillus nidulans. Autolysis is also involved in bacterial biofilm formation.","definition_xrefs":["PMID:19286987","GOC:add","PMID:26811896","GOC:jh2","GOC:mtg_apoptosis","PMID:10974124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"programmed cell death","termid":"GO:0012501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"autolysis","secondary_identifiers":["Wikipedia:Autolysis"],"termid":"GO:0001896"}


id: PR:O94299
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC887.16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C887.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.16","synonyms":[{"name":"Spom972h-SPBC887.16","type":"exact"}],"termid":"PR:O94299"}


id: MONDO:0012208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratinopathic ichthyosis","termid":"MONDO:0017266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"congenital reticular ichthyosiform erythroderma","secondary_identifiers":["GARD:17305","MEDGEN:777141","Orphanet:281190","SCTID:703504006","MESH:C563781","OMIM:609165","icd11.foundation:565254051","UMLS:C3665704"],"synonyms":[{"name":"Aarau disease","type":"related"},{"name":"CRIE","type":"exact"},{"name":"IWC","type":"exact"},{"name":"erythroderma, ichthyosiform, congenital reticular","type":"related"},{"name":"erythrokeratoderma, reticular","type":"related"},{"name":"ichthyosis variegata","type":"exact"},{"name":"ichthyosis with confetti","type":"exact"}],"termid":"MONDO:0012208","xrefs":{"Monarch":{"xref_id":"0012208"}}}


id: PBO:0056730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoderm specific transcript","termid":"PBO:0056730"}


id: PBO:0003116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domains","termid":"PBO:0003116"}


id: GO:0050993
data:
  {"annotated_genes":["SJAG_04307"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050992"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dimethylallyl diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04307":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"dimethylallyl diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000041":null},"synonyms":[{"name":"DPP metabolic process","type":"exact"},{"name":"DPP metabolism","type":"exact"},{"name":"dimethylallyl diphosphate metabolism","type":"exact"},{"name":"dimethylallyl pyrophosphate metabolic process","type":"exact"},{"name":"dimethylallyl pyrophosphate metabolism","type":"exact"}],"termid":"GO:0050993","terms_by_termid":{"GO:0050992":null}}


id: GO:0050184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (9Z)-octadecenoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = a (9Z,12Z)-octadecadienoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O.","definition_xrefs":["RHEA:46332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"acyl-lipid omega-6 desaturase (cytochrome b5) activity","secondary_identifiers":["EC:1.14.19.22","GO:0102855","GO:0102857","GO:0102860","GO:0102871","KEGG_REACTION:R03475","MetaCyc:RXN-9669","GO:0102861"],"synonyms":[{"name":"1-16:0-2-18:1-phosphatidylcholine desaturase activity","type":"narrow"},{"name":"1-18:1-2-18:2-phosphatidylcholine desaturase activity","type":"narrow"},{"name":"1-18:1-2-18:2-phosphatidylcholine synthase activity","type":"narrow"},{"name":"1-18:1-2-18:3-phosphatidylcholinedesaturase activity","type":"narrow"},{"name":"1-18:2-2-18:1-phosphatidylcholine desaturase activity (SN2-18:2 forming)","type":"narrow"},{"name":"1-acyl-2-oleoyl-sn-glycero-3-phosphocholine:NAD+ delta12-oxidoreductase activity","type":"related"},{"name":"linoleate synthase activity","type":"related"},{"name":"oleate desaturase activity","type":"related"},{"name":"oleoyl-CoA desaturase activity","type":"related"},{"name":"oleoylphosphatidylcholine desaturase activity","type":"related"},{"name":"phosphatidylcholine desaturase activity","type":"related"}],"termid":"GO:0050184"}


id: PBO:0044437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 2","termid":"PBO:0044437"}


id: PBO:0002070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase involved in sporulation","termid":"PBO:0002070"}


id: PBO:0075342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sortilin related receptor 1","termid":"PBO:0075342"}


id: GO:0050107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + a monoterpenol = CoA + a monoterpenol acetate ester.","definition_xrefs":["EC:2.3.1.69","MetaCyc:MONOTERPENOL-O-ACETYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"monoterpenol O-acetyltransferase activity","synonyms":[{"name":"acetyl-CoA:monoterpenol O-acetyltransferase activity","type":"related"},{"name":"menthol transacetylase activity","type":"narrow"}],"termid":"GO:0050107"}


id: GO:0017129
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a triester of glycerol.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid binding","termid":"GO:0008289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"triglyceride binding","synonyms":[{"name":"triacylglycerol binding","type":"exact"}],"termid":"GO:0017129"}


id: GO:0001570
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id: PBO:0085340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in the cytoplasm-to-vacuole targeting (CVT) pathway, autophagy, micronucleophagy and mitophagy; binds to several phosphoinositides including: PtdIns(3,5)P2, PI3P and PI4P; involved in PI3P-dependent recruitment and organization of both the Atg12-Atg5-Atg16 complex and Atg8p at the pre-autophagosomal structure; necessary for oxidant-induced cell death; WD-40 repeat containing PROPPIN family member","termid":"PBO:0085340"}


id: PBO:0051616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin like domain containing receptor 1","termid":"PBO:0051616"}


id: GO:0002476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["PMID:15928678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class Ib","termid":"GO:0002428"},{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen","termid":"GO:0002483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002476"}


id: GO:0006130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-phosphofructokinase reduction (obsolete GO:0006130)","synonyms":[{"name":"6-phosphofructokinase reduction","type":"exact"}],"termid":"GO:0006130"}


id: GO:1902148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to cytokinesis checkpoint signaling.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to cell cycle checkpoint signaling","termid":"GO:1902146"},{"relation_name":"is_a","term_name":"regulation of response to cytokinesis checkpoint signaling","termid":"GO:1902147"},{"relation_name":"positively_regulates","term_name":"response to cytokinesis checkpoint signaling","termid":"GO:0072399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to cytokinesis checkpoint signaling","secondary_identifiers":["GO:1902150"],"synonyms":[{"name":"activation of cytokinesis checkpoint effector process","type":"exact"},{"name":"activation of response to cytokinesis checkpoint signaling","type":"narrow"},{"name":"activation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"positive regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"positive regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up-regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up-regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up-regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"upregulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"upregulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"upregulation of response to signal involved in cytokinesis checkpoint","type":"exact"}],"termid":"GO:1902148"}


id: PBO:0031674
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_secretion","termid":"PBO:0031674"}


id: MONDO:0032485
data:
  {"annotated_genes":["SJAG_01778"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88513],"is_not":false,"summary":null,"term":"MONDO:0032485"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual developmental disorder 61","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18514","DOID:0061034","MEDGEN:1684867","UMLS:C5231400","OMIM:618009"],"synonyms":[{"name":"INTELLECTUAL DEVELOPMENTAL DISORDER 61","type":"related"},{"name":"MRD61","type":"related"},{"name":"Mental Retardation, Autosomal Dominant 61","type":"related"}],"termid":"MONDO:0032485","terms_by_termid":{"MONDO:0032485":null},"xrefs":{"Monarch":{"xref_id":"0032485"}}}


id: GO:0097219
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sieve plate that contains several specialized sieve areas in either a scalariform or reticulate arrangement.","definition_xrefs":["POC:curators","ISBN:0471738433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sieve plate","termid":"GO:0097218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"compound sieve plate","termid":"GO:0097219"}


id: PBO:0070998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21","termid":"PBO:0070998"}


id: GO:0004559
data:
  {"annotated_genes":["SJAG_05272","SJAG_04851","SJAG_02711","SJAG_03032","SJAG_04850","SJAG_01858","SJAG_01883","SJAG_00310"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90313],"is_not":false,"summary":null,"term":"GO:0004559"},{"annotations":[58256,57873,58487,98942,64331],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008496"},{"annotations":[80706,68399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004571"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides.","definition_xrefs":["EC:3.2.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosidase activity","termid":"GO:0015923"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00310":null,"SJAG_01858":null,"SJAG_01883":null,"SJAG_02711":null,"SJAG_03032":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_05272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"alpha-mannosidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.2.1.24-RXN","Reactome:R-HSA-6799545","Reactome:R-HSA-8853686","Reactome:R-HSA-9694656"],"synonyms":[{"name":"1,2-alpha-D-mannosidase activity","type":"narrow"},{"name":"1,2-alpha-mannosidase","type":"narrow"},{"name":"alpha-D-mannopyranosidase activity","type":"related"},{"name":"alpha-D-mannosidase activity","type":"related"},{"name":"alpha-D-mannoside mannohydrolase activity","type":"related"},{"name":"exo-alpha-mannosidase activity","type":"related"},{"name":"p-nitrophenyl-alpha-mannosidase activity","type":"narrow"}],"termid":"GO:0004559","terms_by_termid":{"GO:0004559":null,"GO:0004571":null,"GO:0008496":null}}


id: MONDO:0100145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A COVID-19 infection where individuals test positive for SARS-CoV-2 but have no symptoms when they first test positive, but develop symptoms later on.","gene_count":0,"genotype_count":0,"name":"obsolete presymptomatic COVID-19 infection (obsolete MONDO:0100145)","termid":"MONDO:0100145","xrefs":{"Monarch":{"xref_id":"0100145"}}}


id: SO:0000646
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. siRNAs trigger the cleavage of their target molecules.","definition_xrefs":["PMID:12592000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/SiRNA"],"synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:siRNA","type":"exact"},{"name":"small interfering RNA","type":"exact"}],"termid":"SO:0000646"}


id: GO:0007239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of Hog1 (obsolete GO:0007239)","synonyms":[{"name":"activation of Hog1","type":"exact"}],"termid":"GO:0007239"}


id: MONDO:0015269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symmetrical thalamic calcifications are clinically distinguished by a low Apgar score, spasticity or marked hypotonia, weak or absent cry, poor feeding, and facial diplegia or weakness.","definition_xrefs":["Orphanet:1314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symmetrical thalamic calcifications","secondary_identifiers":["SCTID:719164000","GARD:5070","MEDGEN:930583","UMLS:C4304914"],"synonyms":[{"name":"bilateral symmetrical thalamic gliosis","type":"exact"}],"termid":"MONDO:0015269","xrefs":{"Monarch":{"xref_id":"0015269"}}}


id: FYPO:0000144
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing is abnormal. Chromatin silencing is the observed effect of processes that repress transcription in a region of the genome that is normally assembled into heterochromatin or CENP-A-containing chromatin (the latter is found at the centromere central core).","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal gene silencing","termid":"FYPO:0000574"},{"relation_name":"is_a","term_name":"abnormal negative regulation of transcription during vegetative growth","termid":"FYPO:0000624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal chromatin silencing","synonyms":[{"name":"abnormal chromatin silencing during mitotic cell cycle","type":"related"},{"name":"abnormal chromatin silencing during vegetative growth","type":"exact"}],"termid":"FYPO:0000144"}


id: PBO:0085908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress","termid":"PBO:0085908"}


id: GO:0048853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the forebrain are generated and organized. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).","definition_xrefs":["GOC:dgh","GOC:cvs","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"forebrain development","termid":"GO:0030900"},{"relation_name":"part_of","term_name":"brain morphogenesis","termid":"GO:0048854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forebrain morphogenesis","synonyms":[{"name":"prosencephalon morphogenesis","type":"exact"}],"termid":"GO:0048853"}


id: MONDO:1010992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hydrocephalus that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocephalus, non-human animal","termid":"MONDO:1010233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalus, sheep","secondary_identifiers":["OMIA:000487-9940"],"termid":"MONDO:1010992","xrefs":{"Monarch":{"xref_id":"1010992"}}}


id: PBO:0035722
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_processing_during_vegetative_growth","termid":"PBO:0035722"}


id: GO:0031375
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity.","definition_xrefs":["ISBN:0471331309","ISBN:0716720094","PMID:12957385","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete type II fatty acid synthase complex (obsolete GO:0031375)","synonyms":[{"name":"type II FAS","type":"exact"},{"name":"type II FAS complex","type":"exact"},{"name":"type II fatty acid synthase","type":"exact"},{"name":"type II fatty acid synthase complex","type":"exact"}],"termid":"GO:0031375"}


id: PBO:0052639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 7","termid":"PBO:0052639"}


id: GO:0120537
data:
  {"annotated_genes":["SJAG_04642"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116931],"is_not":false,"summary":null,"term":"GO:0120537"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-demethylubiquinone + S-adenosyl-L-methionine = a ubiquinone + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:38425362","RHEA:81215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04642":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"3-demethylubiquinone 3-O-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120537","terms_by_termid":{"GO:0120537":null}}


id: GO:0047835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-tryptophan + acetyl-CoA = N-acetyl-D-tryptophan + CoA + H+.","definition_xrefs":["RHEA:10060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-amino-acid N-acetyltransferase activity","termid":"GO:0047812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"D-tryptophan N-acetyltransferase activity","secondary_identifiers":["EC:2.3.1.34","KEGG_REACTION:R02481","MetaCyc:D-TRYPTOPHAN-N-ACETYLTRANSFERASE-RXN"],"synonyms":[{"name":"D-tryptophan acetyltransferase activity","type":"related"},{"name":"acetyl-CoA-D-tryptophan-alpha-N-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:D-tryptophan N-acetyltransferase activity","type":"related"}],"termid":"GO:0047835"}


id: GO:0061825
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The F-actin-rich core of an adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell.","definition_xrefs":["PMID:23158496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"podosome","termid":"GO:0002102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0015629"],"is_obsolete":false,"name":"podosome core","termid":"GO:0061825"}


id: GO:0043168
data:
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id: SO:0001158
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id: PBO:0072468
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id: GO:0010919
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id: PBO:0026949
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id: PBO:0052876
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id: GO:0140841
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + RNA polymerase II large subunit CTD heptapeptide repeat (YSPTSPS) = UDP + RNA polymerase II large subunit CTD heptapeptide repeat 3-O-(N-acetyl-D-glucosaminyl)-L-serine.","definition_xrefs":["PMID:22605332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein O-acetylglucosaminyltransferase activity","termid":"GO:0097363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"RNA polymerase II C-terminal domain O-GlcNAc transferase activity","termid":"GO:0140841"}


id: PBO:0031734
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id: FYPO:0002873
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell has a septum in the normal orientation perpendicular the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal septum location","termid":"FYPO:0002253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal septum orientation","synonyms":[{"name":"normal septum orientation during mitotic cell cycle","type":"related"},{"name":"normal septum orientation during vegetative growth","type":"exact"},{"name":"normal septum position","type":"related"}],"termid":"FYPO:0002873"}


id: MONDO:0021301
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A adenoma that involves the nipple.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system benign neoplasm","termid":"MONDO:0000652"},{"relation_name":"is_a","term_name":"breast adenoma","termid":"MONDO:0002058"},{"relation_name":"is_a","term_name":"nipple neoplasm","termid":"MONDO:0002482"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenoma of nipple","secondary_identifiers":["ICDO:8506/0","SCTID:302829009","NCIT:C4192","MEDGEN:137752","UMLS:C0334378"],"synonyms":[{"name":"adenoma of the nipple","type":"exact"},{"name":"nipple adenoma","type":"exact"},{"name":"papillomatosis, subareolar duct","type":"exact"},{"name":"subareolar duct papillomatosis","type":"related"}],"termid":"MONDO:0021301","xrefs":{"Monarch":{"xref_id":"0021301"}}}


id: PBO:0002781
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id: GO:0008385
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id: GO:0043438
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetoacetic acid, 3-oxobutanoic acid; the empirical formula is C4H6O3 or CH3COCH2COOH.","definition_xrefs":["Wikipedia:Acetoacetic_acid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"},{"relation_name":"is_a","term_name":"ketone body metabolic process","termid":"GO:1902224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"acetoacetic acid metabolic process","synonyms":[{"name":"3-oxobutanoate metabolic process","type":"exact"},{"name":"3-oxobutanoate metabolism","type":"exact"},{"name":"3-oxobutanoic acid metabolic process","type":"exact"},{"name":"3-oxobutanoic acid metabolism","type":"exact"},{"name":"acetoacetate metabolic process","type":"exact"},{"name":"acetoacetate metabolism","type":"exact"},{"name":"acetoacetic acid metabolism","type":"exact"},{"name":"beta ketobutyric acid metabolic process","type":"exact"},{"name":"beta ketobutyric acid metabolism","type":"exact"},{"name":"beta-ketobutyric acid metabolic process","type":"exact"},{"name":"beta-ketobutyric acid metabolism","type":"exact"},{"name":"diacetic acid metabolic process","type":"exact"},{"name":"diacetic acid metabolism","type":"exact"}],"termid":"GO:0043438"}


id: PBO:0046733
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id: PBO:0069329
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id: PBO:0011997
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id: GO:0010895
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95893],"is_not":false,"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ergosterol biosynthetic process","termid":"GO:0032443"},{"relation_name":"is_a","term_name":"negative regulation of sterol biosynthetic process","termid":"GO:0106119"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"negatively_regulates","term_name":"ergosterol biosynthetic process","termid":"GO:0006696"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of ergosterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010895","terms_by_termid":{"GO:0010895":null}}


id: MONDO:0009665
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A late-onset form of multiple carboxylase deficiency, an inborn error of biotin metabolism that, if untreated, is characterized by seizures, breathing difficulties, hypotonia, skin rash, alopecia, hearing loss and delayed development.","definition_xrefs":["Orphanet:79241"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic epilepsy","termid":"MONDO:0100033"},{"relation_name":"is_a","term_name":"multiple carboxylase deficiency","termid":"MONDO:0015454"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005244","MONDO:0037792"],"is_obsolete":false,"name":"biotinidase deficiency","secondary_identifiers":["DOID:856","MedDRA:10071434","ICD9:277.6","MESH:D028921","NORD:857","OMIM:253260","NANDO:1200822","NCIT:C84598","MEDGEN:66323","ICD10CM:D81.810","SCTID:8808004","UMLS:C0220754","GARD:894"],"synonyms":[{"name":"BTD deficiency","type":"exact"},{"name":"biotin deficiency","type":"related"},{"name":"biotinidase deficiency","type":"exact"},{"name":"deficiency of biotinidase","type":"exact"},{"name":"juvenile-onset multiple carboxylase deficiency","type":"exact"},{"name":"late-onset biotin-responsive multiple carboxylase deficiency","type":"related"},{"name":"late-onset multiple carboxylase deficiency","type":"exact"},{"name":"multiple carboxylase deficiency, juvenile-onset","type":"related"},{"name":"multiple carboxylase deficiency, late-onset","type":"related"}],"termid":"MONDO:0009665","xrefs":{"Monarch":{"xref_id":"0009665"}}}


id: PBO:0056295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1B","termid":"PBO:0056295"}


id: GO:1902512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic DNA fragmentation.","definition_xrefs":["GOC:TermGenie","PMID:15572351","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic DNA fragmentation","termid":"GO:1902510"},{"relation_name":"is_a","term_name":"positive regulation of DNA catabolic process","termid":"GO:1903626"},{"relation_name":"positively_regulates","term_name":"apoptotic DNA fragmentation","termid":"GO:0006309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of apoptotic DNA fragmentation","synonyms":[{"name":"activation of DNA catabolic process during apoptosis","type":"narrow"},{"name":"activation of DNA catabolism during apoptosis","type":"narrow"},{"name":"activation of DNA fragmentation involved in apoptotic nuclear change","type":"narrow"},{"name":"activation of apoptotic DNA fragmentation","type":"narrow"},{"name":"activation of endonucleolytic DNA catabolic process involved in apoptosis","type":"narrow"},{"name":"positive regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"positive regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"positive regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"positive regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"up regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"up regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"up regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"up regulation of apoptotic DNA fragmentation","type":"exact"},{"name":"up regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"up-regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"up-regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"up-regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"up-regulation of apoptotic DNA fragmentation","type":"exact"},{"name":"up-regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"upregulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"upregulation of DNA catabolism during apoptosis","type":"exact"},{"name":"upregulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"upregulation of apoptotic DNA fragmentation","type":"exact"},{"name":"upregulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"}],"termid":"GO:1902512"}


id: MONDO:0002487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually benign neoplasm that arises from the breast. It presents as a single, firm, and painless mass. It is characterized by the presence of neoplastic cells with eosinophilic granular cytoplasm.","definition_xrefs":["NCIT:C40400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granular cell tumor","termid":"MONDO:0006235"},{"relation_name":"is_a","term_name":"breast neoplasm","termid":"MONDO:0021100"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast granular cell tumor","secondary_identifiers":["MEDGEN:307309","UMLS:C1511312","DOID:3011"],"synonyms":[{"name":"breast granular cell tumor","type":"exact"},{"name":"granular cell tumor of breast","type":"exact"},{"name":"granular cell tumour of breast","type":"exact"}],"termid":"MONDO:0002487","xrefs":{"Monarch":{"xref_id":"0002487"}}}


id: MONDO:0010700
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"optic atrophy--spastic paraplegia syndrome","secondary_identifiers":["MESH:C564084","OMIM:311100","UMLS:C1839565","MEDGEN:326914"],"synonyms":[{"name":"optic atrophy--spastic paraplegia syndrome","type":"exact"}],"termid":"MONDO:0010700","xrefs":{"Monarch":{"xref_id":"0010700"}}}


id: PBO:0042483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDH8 antisense RNA 1","termid":"PBO:0042483"}


id: PBO:0078699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 1-2","termid":"PBO:0078699"}


id: MONDO:0012205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant striatal degeneration is a neurologic disorder characterized by variable movement abnormalities due to dysfunction in the striatal part of the basal ganglia.","definition_xrefs":["OMIM:609161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striatal degeneration, autosomal dominant","termid":"MONDO:0000211"},{"relation_name":"is_a","term_name":"parkinsonian disorder","termid":"MONDO:0021095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005066","MONDO:0005559"],"is_obsolete":false,"name":"autosomal dominant striatal neurodegeneration type 1","secondary_identifiers":["MEDGEN:934775","SCTID:725392005","UMLS:C4310808"],"synonyms":[{"name":"ADSD","type":"related"},{"name":"ADSD1","type":"exact"},{"name":"PDE8B striatal degeneration, autosomal dominant","type":"exact"},{"name":"autosomal dominant striatal neurodegeneration","type":"related"},{"name":"striatal Degeneration, autosomal dominant 1","type":"exact"},{"name":"striatal degeneration, autosomal dominant","type":"related"},{"name":"striatal degeneration, autosomal dominant 1","type":"exact"},{"name":"striatal degeneration, autosomal dominant caused by mutation in PDE8B","type":"exact"}],"termid":"MONDO:0012205","xrefs":{"Monarch":{"xref_id":"0012205"}}}


id: PBO:0036122
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cytoplasmic_microtubule_nucleation_from_spindle_pole_body_during_mitotic_interphase","termid":"PBO:0036122"}


id: MONDO:0016564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"PSP-progressive non fluent aphasia (PSP-PNFA) is an atypical variant of progressive supranuclear palsy (PSP), a rare late-onset neurodegenerative disease. Unlike classic PSP (Richardson syndrome) patients present with an isolated speech production problem years before developing other motor features of PSP.","definition_xrefs":["Orphanet:240112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atypical progressive supranuclear palsy syndrome","termid":"MONDO:0020488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"progressive supranuclear palsy-progressive non-fluent aphasia syndrome","secondary_identifiers":["UMLS:C5679850","GARD:20649","MEDGEN:1842806"],"synonyms":[{"name":"PSP-AOS","type":"exact"},{"name":"PSP-PNFA","type":"exact"},{"name":"progressive supranuclear palsy-apraxia of speech syndrome","type":"exact"}],"termid":"MONDO:0016564","xrefs":{"Monarch":{"xref_id":"0016564"}}}


id: PBO:0001279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) polymerase Cid16 (predicted)","termid":"PBO:0001279"}


id: PR:O14138
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25A8.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25A8.03c","synonyms":[{"name":"Spom972h-SPAC25A8.03c","type":"exact"},{"name":"protein midA homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14138"}


id: PBO:0060774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B8","termid":"PBO:0060774"}


id: PR:Q10088
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"agmatinase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.09","synonyms":[{"name":"AUH 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC11D3.09","type":"exact"},{"name":"agmatine ureohydrolase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10088"}


id: PBO:0067744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 43","termid":"PBO:0067744"}


id: MONDO:0016734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade III neuroepithelial neoplasm composed of neoplastic, mature ganglion cells and anaplastic glial cells. The anaplastic changes in the glial component and high MIB-1 and TP53 labeling indices may indicate aggressive behavior. However, the correlation of histological anaplasia with clinical outcome is inconsistent. (Adapted from WHO)","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ganglioglioma","termid":"MONDO:0016733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaplastic ganglioglioma","secondary_identifiers":["NCIT:C4717","MEDGEN:140906","ONCOTREE:AGNG","Orphanet:251957","UMLS:C0431112","GARD:10639","ICDO:9505/3"],"synonyms":[{"name":"AGNG","type":"related"}],"termid":"MONDO:0016734","xrefs":{"Monarch":{"xref_id":"0016734"}}}


id: PBO:0028704
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_damage_during_vegetative_growth","termid":"PBO:0028704"}


id: PBO:0039178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 8 pseudogene 1","termid":"PBO:0039178"}


id: PBO:0063258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 4","termid":"PBO:0063258"}


id: GO:0001941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft).","definition_xrefs":["GOC:dph","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"postsynapse organization","termid":"GO:0099173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"postsynaptic membrane organization","synonyms":[{"name":"post-synaptic membrane organization","type":"exact"},{"name":"postsynaptic membrane organisation","type":"exact"}],"termid":"GO:0001941"}


id: GO:1903482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly (obsolete GO:1903482)","synonyms":[{"name":"activation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"narrow"},{"name":"activation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"activation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"positive regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"positive regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"up regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"up regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"up-regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up-regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"up-regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"upregulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"upregulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"upregulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903482"}


id: SO:0000570
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"D_gene_recombination_feature","termid":"SO:0000492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_D_recombination_signal_sequence","synonyms":[{"name":"3'D-RS","type":"exact"},{"name":"three prime D recombination signal sequence","type":"exact"},{"name":"three_prime_D-recombination_signal_sequence","type":"exact"}],"termid":"SO:0000570"}


id: GO:0039652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a virus initiates, promotes, or enhances an NF-kappaB signaling cascade in its host organism.","definition_xrefs":["PMID:11907233","PMID:7845680"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by virus of host NF-kappaB cascade (obsolete GO:0039652)","synonyms":[{"name":"activation by virus of host NF-kappaB transcription factor activity","type":"related"}],"termid":"GO:0039652"}


id: GO:0031845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 5 neuropeptide Y receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide Y receptor binding","termid":"GO:0031841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 5 neuropeptide Y receptor binding","synonyms":[{"name":"type 5 neuropeptide Y receptor ligand","type":"narrow"}],"termid":"GO:0031845"}


id: PBO:0041693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CALCRL and TFPI antisense RNA 1","termid":"PBO:0041693"}


id: GO:0075163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its G-protein beta subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of G-protein beta subunit-mediated signal transduction in response to host (obsolete GO:0075163)","synonyms":[{"name":"positive regulation of symbiont G-protein beta subunit-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075163"}


id: PBO:0002295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-glucoside transporter Sut1","termid":"PBO:0002295"}


id: GO:0051094
data:
  {"annotated_genes":["SJAG_04509","SJAG_01212","SJAG_03453","SJAG_02392","SJAG_02169","SJAG_04853","SJAG_00514","SJAG_01794","SJAG_03581","SJAG_02379"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91875,96589,97858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[104304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075296"},{"annotations":[92735],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"},{"annotations":[91879,89902,113420,92855,95485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902917"},{"annotations":[110921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"positively_regulates","term_name":"developmental process","termid":"GO:0032502"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01212":null,"SJAG_01794":null,"SJAG_02169":null,"SJAG_02379":null,"SJAG_02392":null,"SJAG_03453":null,"SJAG_03581":null,"SJAG_04509":null,"SJAG_04853":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of developmental process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of developmental process","type":"narrow"},{"name":"stimulation of developmental process","type":"narrow"},{"name":"up regulation of developmental process","type":"exact"},{"name":"up-regulation of developmental process","type":"exact"},{"name":"upregulation of developmental process","type":"exact"}],"termid":"GO:0051094","terms_by_termid":{"GO:0051519":null,"GO:0075296":null,"GO:0090141":null,"GO:1902917":null,"GO:1903024":null}}


id: PBO:0003748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA guanylyltransferase Ceg1","termid":"PBO:0003748"}


id: GO:0031354
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plastid outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of plastid outer membrane (obsolete GO:0031354)","synonyms":[{"name":"intrinsic to plastid outer membrane","type":"narrow"}],"termid":"GO:0031354"}


id: MOD:00797
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"a protein modification that effectively converts an L-cysteine residue to the PEP adduct, 2-(S-L-cysteinyl)pyruvic acid O-phosphothioketal","definition_xrefs":["PubMed:8664284","ChEBI:149496","PubMed:4696757","RESID:AA0391","PubMed:7999765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(S-L-cysteinyl)pyruvic acid O-phosphothioketal","synonyms":[{"name":"(2R)-2-amino-3-[1-carboxy-1-(phosphonooxy)ethyl]sulfanylpropanoic acid","type":"exact"},{"name":"2-(S-L-cysteinyl)pyruvic acid O-phosphothioketal","type":"exact"},{"name":"2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-2-(phosphonooxy)propanoic acid","type":"exact"},{"name":"2-([(2R)-2-azanyl-2-carboxyethyl]sulfanyl)-2-(phosphonooxy)propanoic acid","type":"exact"},{"name":"MOD_RES 2-(S-cysteinyl)pyruvic acid O-phosphothioketal","type":"exact"},{"name":"S-[1-carboxy-1-(phosphonooxy)ethyl]cysteine","type":"exact"},{"name":"SPEPCys","type":"exact"},{"name":"cysteinyl pyruvate O-phosphothioketal","type":"exact"},{"name":"phosphoenolpyruvate cysteine adduct","type":"exact"},{"name":"phospholactoyl cysteine adduct","type":"exact"}],"termid":"MOD:00797"}


id: RO:0001020
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"causes_or_contributes_to_condition","termid":"RO:0003302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_allergic_trigger_for","termid":"RO:0001020"}


id: PR:Q10087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C11D3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.08c","synonyms":[{"name":"Spom972h-SPAC11D3.08c","type":"exact"}],"termid":"PR:Q10087"}


id: SO:0001997
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A heterochromatic region of the chromosome, adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed.","definition_xrefs":["POMBE:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_structural_element","termid":"SO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subtelomere","termid":"SO:0001997"}


id: PBO:0108900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 13","termid":"PBO:0108900"}


id: PBO:0070057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 14, pseudogene","termid":"PBO:0070057"}


id: PBO:0087109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal protein P2 beta; a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; free (non-ribosomal) P2 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm","termid":"PBO:0087109"}


id: PBO:0079569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin B pseudogene 1","termid":"PBO:0079569"}


id: MONDO:0020078
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A group of acute myeloid leukemias characterized by recurrent genetic abnormalities, mainly balanced translocations. (WHO, 2001)","definition_xrefs":["NCIT:C7175"],"gene_count":0,"genotype_count":0,"name":"obsolete acute myeloid leukemia with recurrent genetic anomaly (obsolete MONDO:0020078)","secondary_identifiers":["ONCOTREE:AMLRGA","icd11.foundation:1430965006","Orphanet:98277"],"synonyms":[{"name":"AML with recurrent Genetic abnormalities","type":"exact"},{"name":"AML with recurrent genetic anomaly","type":"exact"},{"name":"acute myeloid Leukemia with balanced Translocations/Inversions","type":"exact"},{"name":"acute myeloid Leukemia with recurrent Genetic abnormalities","type":"exact"}],"termid":"MONDO:0020078","xrefs":{"Monarch":{"xref_id":"0020078"}}}


id: MONDO:0022448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete amyoplasia mandibulofacial dysostosis (obsolete MONDO:0022448)","termid":"MONDO:0022448","xrefs":{"Monarch":{"xref_id":"0022448"}}}


id: MONDO:0007867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited isolated nail anomaly","termid":"MONDO:0019284"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nonsyndromic congenital nail disorder 2","secondary_identifiers":["MEDGEN:75593","MESH:C537260","OMIM:149300","DOID:0080080","SCTID:66270006","UMLS:C0266000","ICD9:703.8"],"synonyms":[{"name":"Koilonychia with leukonychia","type":"related"},{"name":"Koilonychia, hereditary","type":"related"},{"name":"NDNC2","type":"related"},{"name":"congenital koilonychia","type":"related"},{"name":"familial koilonychia","type":"related"},{"name":"hereditary koilonychia","type":"related"},{"name":"nail disorder, nonsyndromic congenital, 2","type":"related"},{"name":"nonsyndromic congenital nail disorder type 2","type":"exact"},{"name":"spoon nails","type":"related"}],"termid":"MONDO:0007867","xrefs":{"Monarch":{"xref_id":"0007867"}}}


id: PBO:0091767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating type M-specific HMG-box DNA-binding transcription factor Mc at silenced MAT3 locus","termid":"PBO:0091767"}


id: MONDO:0007523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ehlers-Danlos syndrome, hypermobility type (HT-EDS) is the most frequent form of EDS, a group of hereditary connective tissue diseases, and is characterized by joint hyperlaxity, mild skin hyperextensibility, tissue fragility and extra-musculoskeletal manifestations.","definition_xrefs":["Orphanet:285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome, hypermobility type","secondary_identifiers":["SCTID:30652003","MEDGEN:75670","GARD:2081","NANDO:2201257","DOID:14757","UMLS:C0268337","OMIM:130020","MESH:C536196","NANDO:1200647","NCIT:C125698"],"synonyms":[{"name":"EDS 3","type":"related"},{"name":"EDS III","type":"exact"},{"name":"EDS3 (formerly)","type":"related"},{"name":"EDSHMB","type":"exact"},{"name":"Ehlers-Danlos syndrome type 3","type":"exact"},{"name":"Ehlers-Danlos syndrome type 3 (formerly)","type":"exact"},{"name":"Ehlers-Danlos syndrome, hypermobile type","type":"exact"},{"name":"Ehlers-Danlos syndrome, hypermobility type","type":"exact"},{"name":"Ehlers-Danlos syndrome, type 3","type":"exact"},{"name":"Ehlers-Danlos syndrome, type III","type":"exact"},{"name":"HT-EDS","type":"exact"},{"name":"benign hypermobility syndrome","type":"related"},{"name":"hEDS","type":"related"},{"name":"hypermobile EDS","type":"related"},{"name":"hypermobile Ehlers-Danlos syndrome","type":"related"}],"termid":"MONDO:0007523","xrefs":{"Monarch":{"xref_id":"0007523"}}}


id: GO:1900216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:yaf","GOC:TermGenie","PMID:17314325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in metanephric collecting duct development","termid":"GO:1900214"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in development","termid":"GO:1904747"},{"relation_name":"positively_regulates","term_name":"apoptotic process involved in metanephric collecting duct development","termid":"GO:1900204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic process involved in metanephric collecting duct development","synonyms":[{"name":"activation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"activation of apoptotic process involved in metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"activation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"activation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"activation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"activation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"positive regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"up regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"up regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"up regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"up-regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"upregulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"upregulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"upregulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"}],"termid":"GO:1900216"}


id: PBO:0042898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H related 2","termid":"PBO:0042898"}


id: MONDO:0008558
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune disorder in which the number of circulating platelets is reduced due to their antibody-mediated destruction. ITP is a diagnosis of exclusion and is heterogeneous in origin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited bleeding disorder, platelet-type","termid":"MONDO:0000009"},{"relation_name":"is_a","term_name":"primary thrombocytopenia","termid":"MONDO:0004680"},{"relation_name":"is_a","term_name":"autoimmune thrombocytopenia","termid":"MONDO:0019098"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"},{"relation_name":"is_a","term_name":"thrombocytopenic purpura","termid":"MONDO:0043768"},{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"autoimmune thrombocytopenic purpura","secondary_identifiers":["Orphanet:3002","UMLS:C0398650","DOID:8924","ICD9:287.31","NANDO:2200645","GARD:5194","icd11.foundation:364346400","MedDRA:10021245","MEDGEN:584986","NANDO:1200315","EFO:0007160","NCIT:C3446","OMIM:188030","ICD10CM:D69.3"],"synonyms":[{"name":"AITP","type":"related"},{"name":"ITP","type":"exact"},{"name":"Werlhof's disease","type":"related"},{"name":"autoimmune thrombocytopenic purpura","type":"exact"},{"name":"ideopath thrombocytopenic pur","type":"related"},{"name":"idiopathic purpura","type":"related"},{"name":"idiopathic thrombocytopenia","type":"exact"},{"name":"idiopathic thrombocytopenia purpura","type":"exact"},{"name":"idiopathic thrombocytopenic purpura","type":"exact"},{"name":"immune thrombocytopenia","type":"broad"},{"name":"immune thrombocytopenic purpura","type":"related"},{"name":"primary thrombocytopenic purpura","type":"exact"},{"name":"thrombocytopenic purpura autoimmune","type":"related"},{"name":"thrombocytopenic purpura, autoimmune","type":"exact"}],"termid":"MONDO:0008558","xrefs":{"Monarch":{"xref_id":"0008558"}}}


id: MONDO:0030997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 37","secondary_identifiers":["MEDGEN:1783339","OMIM:619272","GARD:16440","UMLS:C5543281"],"synonyms":[{"name":"MC1DN37","type":"exact"},{"name":"mitochondrial complex 1 deficiency, nuclear type 37","type":"exact"},{"name":"mitochondrial complex I deficiency, nuclear type 37","type":"exact"}],"termid":"MONDO:0030997","xrefs":{"Monarch":{"xref_id":"0030997"}}}


id: GO:0062208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of a pattern recognition receptor signaling pathway.","definition_xrefs":["PMID:30610168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"positive regulation of innate immune response","termid":"GO:0045089"},{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"positively_regulates","term_name":"pattern recognition receptor signaling pathway","termid":"GO:0002221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"}


id: GO:0009542
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Distinct stack of lamellae seen within chloroplasts. Grana contain the pigments, electron transfer compounds, and enzymes essential to the light-dependent reactions of photosynthesis.","definition_xrefs":["ISBN:0140514031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"chloroplast","termid":"GO:0009507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"granum","termid":"GO:0009542"}


id: PBO:0002550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7","termid":"PBO:0002550"}


id: PBO:0051593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL21 antisense RNA 1","termid":"PBO:0051593"}


id: GO:0048548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of pinocytosis. Pinocytosis is the process in which cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"regulates","term_name":"pinocytosis","termid":"GO:0006907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of pinocytosis","termid":"GO:0048548"}


id: GO:1904925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of autophagy of the mitochondrion in response to mitochondrial depolarization.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:TermGenie","PMID:22020285","GOC:pad"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization (obsolete GO:1904925)","termid":"GO:1904925"}


id: PBO:0034278
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_end_sequence","termid":"PBO:0034278"}


id: GO:0006483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The hydroxylation of peptidyl-aspartic acid or asparagine.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-aspartic acid/asparagine hydroxylation (obsolete GO:0006483)","synonyms":[{"name":"aspartic acid/asparagine hydroxylation","type":"exact"},{"name":"peptidyl-aspartic acid/asparagine hydroxylation","type":"exact"}],"termid":"GO:0006483"}


id: PBO:0028810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_autophosphorylation_during_vegetative_growth","termid":"PBO:0028810"}


id: PR:Q9HE05
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin conjugation factor E4 B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13931:SF2","OMA:SCHPO00878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugation factor E4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.10","secondary_identifiers":["UniProtKB:Q9HE05"],"synonyms":[{"name":"Spom972h-UBE4B","type":"exact"},{"name":"UB fusion protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin fusion degradation protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HE05"}


id: PBO:0003980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase DHRS family (predicted)","termid":"PBO:0003980"}


id: FYPO:0004763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome does not occur during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during meiosis","termid":"FYPO:0004762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to kinetochore during meiosis I","synonyms":[{"name":"abolished protein localisation to kinetochore during meiosis I","type":"exact"},{"name":"abolished protein localization to kinetochore during first meiotic nuclear division","type":"exact"},{"name":"abolished protein localization to meiotic kinetochore during meiosis I","type":"exact"},{"name":"protein localization to kinetochore during meiosis I abolished","type":"exact"}],"termid":"FYPO:0004763"}


id: MONDO:0004428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, well circumscribed lung neoplasm morphologically characterized by the presence of cystic spaces resembling alveoli, lined by a simple cuboidal epithelium. The cystic spaces are surrounded by a spindle cell stroma which may show myxoid changes. It is a solitary, usually peripheral lung lesion. Patients are usually asymptomatic and its discovery is an incidental finding during chest X-ray examination. Surgical excision is curative.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung adenoma","termid":"MONDO:0003422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alveoli adenoma","secondary_identifiers":["ICDO:8251/0","UMLS:C0334303","MEDGEN:137740","NCIT:C4140","DOID:8003"],"synonyms":[{"name":"adenoma of alveoli","type":"exact"},{"name":"adenoma of the alveoli","type":"exact"},{"name":"adenoma, bronchioloalveolar, benign","type":"exact"},{"name":"alveolar adenoma","type":"exact"},{"name":"alveolar adenoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0004428","xrefs":{"Monarch":{"xref_id":"0004428"}}}


id: GO:0047061
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-fructose + D-glucose = D-glucitol + D-glucono-1,5-lactone.","definition_xrefs":["EC:1.1.99.28","RHEA:20637"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glucose-fructose oxidoreductase activity","secondary_identifiers":["MetaCyc:1.1.99.28-RXN","KEGG_REACTION:R00874"],"synonyms":[{"name":"D-glucose:D-fructose oxidoreductase activity","type":"related"}],"termid":"GO:0047061"}


id: PBO:0052663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 31","termid":"PBO:0052663"}


id: GO:0036302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle.","definition_xrefs":["GOC:gr","GOC:BHF","UBERON:0002087","ZFA:0001315","PMID:14701881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrioventricular canal development","termid":"GO:0036302"}


id: GO:0044541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the proteolytic processing of an inactive enzyme to an active form in another organism.","definition_xrefs":["GOC:fj","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete zymogen activation in another organism (obsolete GO:0044541)","synonyms":[{"name":"zymogen activation in other organism","type":"exact"}],"termid":"GO:0044541"}


id: PBO:0012296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 implicated in transcription (predicted)","termid":"PBO:0012296"}


id: FYPO:0005461
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule-based movement is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal microtubule-based movement","termid":"FYPO:0007163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal microtubule-based movement during vegetative growth","synonyms":[{"name":"abnormal microtubule-based movement during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005461"}


id: PBO:0001972
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.2.15","termid":"PBO:0001972"}


id: GO:0072573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction directed at lipopolysaccharide antigens.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction","termid":"GO:0002507"},{"relation_name":"is_a","term_name":"negative regulation of lipopolysaccharide-mediated signaling pathway","termid":"GO:0031665"},{"relation_name":"part_of","term_name":"cellular response to lipopolysaccharide","termid":"GO:0071222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"tolerance induction to lipopolysaccharide","synonyms":[{"name":"tolerance induction to LPS","type":"exact"},{"name":"tolerance induction to endotoxin","type":"broad"}],"termid":"GO:0072573"}


id: GO:0090527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of actin filaments.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete actin filament reorganization (obsolete GO:0090527)","termid":"GO:0090527"}


id: PBO:0088177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zeta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER","termid":"PBO:0088177"}


id: GO:0140235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A polyadenylation event (the enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule) that takes place at a postsynapse.","definition_xrefs":["PMID:22727665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA processing","termid":"GO:0006396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"RNA polyadenylation at postsynapse","termid":"GO:0140235"}


id: MONDO:0006268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare diffuse large B-cell lymphoma that arises from the liver and the bulk of the tumor is located in the liver.","definition_xrefs":["NCIT:C96843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"liver lymphoma","termid":"MONDO:0004695"},{"relation_name":"is_a","term_name":"hepatocellular carcinoma","termid":"MONDO:0007256"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004335","MONDO:0004992","MONDO:0005046","MONDO:0002515"],"is_obsolete":false,"name":"liver diffuse large B-cell lymphoma","secondary_identifiers":["UMLS:C2184126","EFO:1000323","MEDGEN:473542"],"synonyms":[{"name":"diffuse large B-cell lymphoma of liver","type":"exact"},{"name":"hepatic diffuse large B-cell lymphoma","type":"exact"},{"name":"liver diffuse large B-cell lymphoma","type":"exact"},{"name":"primary hepatic diffuse large B-cell lymphoma","type":"exact"},{"name":"primary liver diffuse large B-cell lymphoma","type":"exact"}],"termid":"MONDO:0006268","xrefs":{"Monarch":{"xref_id":"0006268"}}}


id: PBO:0074115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 30 member 1","termid":"PBO:0074115"}


id: PBO:0072455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 19","termid":"PBO:0072455"}


id: PBO:0028517
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cytoplasmic_microtubules_present_during_mitosis","termid":"PBO:0028517"}


id: PBO:0082730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the RNA polymerase II mediator complex; mediator is required for transcriptional activation and also has a role in basal transcription","termid":"PBO:0082730"}


id: MOD:00254
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-tyrosine residue and the 5'-end of RNA through a phosphodiester to form O4'-(phospho-5'-RNA)-L-tyrosine.","definition_xrefs":["RESID:AA0249","PubMed:209034","PubMed:1702164","PubMed:217003","PubMed:6264310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleic acid linked residue","termid":"MOD:00751"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O4'-(phospho-5'-RNA)-L-tyrosine","synonyms":[{"name":"(S)-2-amino-3-[4-(5'-ribonucleic acid phosphonoxy)phenyl]propanoic acid","type":"exact"},{"name":"MOD_RES O-(5'-phospho-RNA)-tyrosine","type":"exact"},{"name":"O4'-(phospho-5'-RNA)-L-tyrosine","type":"exact"},{"name":"O4'-L-tyrosine 5'-RNA phosphodiester","type":"exact"}],"termid":"MOD:00254"}


id: GO:0047368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + UDP-N-acetyl-D-galactosamine 4-sulfate = adenosine 3',5'-diphosphate + H+ + UDP-N-acetyl-D-galactosamine 4,6-disulfate.","definition_xrefs":["RHEA:14337","EC:2.8.2.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016782","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine-4-sulfate sulfotransferase activity","secondary_identifiers":["KEGG_REACTION:R04476","MetaCyc:2.8.2.7-RXN"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:UDP-N-acetyl-D-galactosamine-4-sulfate 6-sulfotransferase activity","type":"related"},{"name":"UDP-N-acetylgalactosamine-4-sulphate sulphotransferase activity","type":"exact"},{"name":"uridine diphospho-N-acetylgalactosamine 4-sulfate sulfotransferase activity","type":"related"},{"name":"uridine diphosphoacetylgalactosamine 4-sulfate sulfotransferase activity","type":"related"}],"termid":"GO:0047368"}


id: MONDO:0035112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia with BCR-ABL1","secondary_identifiers":["NCIT:C129785","UMLS:C4329268","GARD:22340","Orphanet:585867","DOID:0080976","MEDGEN:1377153"],"synonyms":[{"name":"AML with BCR-ABL1","type":"exact"},{"name":"AML with t(9;22)(q34.1;q11.2)","type":"exact"},{"name":"acute myeloid leukaemia with t(9;22)(q34.1;q11.2)","type":"exact"},{"name":"acute myeloid leukemia with t(9;22)(q34.1;q11.2)","type":"exact"}],"termid":"MONDO:0035112","xrefs":{"Monarch":{"xref_id":"0035112"}}}


id: PBO:0108507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cruciform-cutting endonuclease Cce1","termid":"PBO:0108507"}


id: PBO:0066728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 25","termid":"PBO:0066728"}


id: GO:0005795
data:
  {"annotated_genes":["SJAG_03555","SJAG_00567","SJAG_04770","SJAG_04548","SJAG_04112","SJAG_00816","SJAG_01276","SJAG_01516","SJAG_02666","SJAG_03347","SJAG_01633","SJAG_04095","SJAG_02902","SJAG_03278","SJAG_01025","SJAG_03634","SJAG_04739","SJAG_00330"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58420,62978,70092,72140,72402],"is_not":false,"summary":null,"term":"GO:0005795"},{"annotations":[77664,98065],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000137"},{"annotations":[79535],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031985"},{"annotations":[80595,73359,78497,100101],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005797"},{"annotations":[73358,98066,78496,101520,80594],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000138"},{"annotations":[72010],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000136"},{"annotations":[71705,89503,60237,120120],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi apparatus subcompartment","termid":"GO:0098791"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00330":null,"SJAG_00567":null,"SJAG_00816":null,"SJAG_01025":null,"SJAG_01276":null,"SJAG_01516":null,"SJAG_01633":null,"SJAG_02666":null,"SJAG_02902":null,"SJAG_03278":null,"SJAG_03347":null,"SJAG_03555":null,"SJAG_03634":null,"SJAG_04095":null,"SJAG_04112":null,"SJAG_04548":null,"SJAG_04739":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005794","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"Golgi stack","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0016940"],"synonyms":[{"name":"Golgi cisternae","type":"exact"},{"name":"dictyosome","type":"narrow"}],"termid":"GO:0005795","terms_by_termid":{"GO:0000136":null,"GO:0000137":null,"GO:0000138":null,"GO:0005795":null,"GO:0005797":null,"GO:0031985":null,"GO:0140497":null}}


id: PBO:0057322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 519b","termid":"PBO:0057322"}


id: PBO:0080894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YTH N6-methyladenosine RNA binding protein F3","termid":"PBO:0080894"}


id: PBO:0030168
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_lysis","termid":"PBO:0030168"}


id: PBO:0055442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2873","termid":"PBO:0055442"}


id: MOD:01063
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to a monomethylated phenylalanine.","definition_xrefs":["DeltaMass:198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"methylated phenylalanine","termid":"MOD:00717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"monomethylated phenylalanine","synonyms":[{"name":"NMePhe","type":"exact"}],"termid":"MOD:01063"}


id: MONDO:0014412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial hyperlipidemia in which the cause of the disease is a mutation in the GPIHBP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial hyperlipidemia","termid":"MONDO:0001336"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"syndromic dyslipidemia","termid":"MONDO:0015905"},{"relation_name":"is_a","term_name":"familial chylomicronemia syndrome","termid":"MONDO:0018637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0006025","MONDO:0002525"],"is_obsolete":false,"name":"hyperlipoproteinemia, type 1D","secondary_identifiers":["MEDGEN:863204","GARD:17973","UMLS:C4014767","Orphanet:535458","DOID:0111420","OMIM:615947"],"synonyms":[{"name":"GPIHBP1 familial hyperlipidemia","type":"exact"},{"name":"familial hyperlipidemia caused by mutation in GPIHBP1","type":"exact"},{"name":"hyperlipoproteinemia, type 1D","type":"exact"},{"name":"hyperlipoproteinemia, type ID","type":"related"}],"termid":"MONDO:0014412","xrefs":{"Monarch":{"xref_id":"0014412"}}}


id: PBO:0046353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 11","termid":"PBO:0046353"}


id: GO:0030243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucan metabolic process","termid":"GO:0051273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"cellulose metabolic process","secondary_identifiers":["GO:0016177"],"synonyms":[{"name":"cellulose metabolism","type":"exact"}],"termid":"GO:0030243"}


id: PBO:0078986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA suppressor (anticodon CTA) 2-1","termid":"PBO:0078986"}


id: GO:1901229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of non-canonical Wnt signaling pathway via JNK cascade.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of non-canonical Wnt signaling pathway via JNK cascade (obsolete GO:1901229)","synonyms":[{"name":"regulation of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"exact"},{"name":"regulation of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"exact"},{"name":"regulation of non-canonical Wnt-activated signaling pathway via JNK cascade","type":"exact"}],"termid":"GO:1901229"}


id: MONDO:1010857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Krabbe disease that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Krabbe disease, non-human animal","termid":"MONDO:1010170"},{"relation_name":"is_a","term_name":"leukodystrophy, sheep","termid":"MONDO:1011006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Krabbe disease, sheep","secondary_identifiers":["OMIA:000578-9940"],"termid":"MONDO:1010857","xrefs":{"Monarch":{"xref_id":"1010857"}}}


id: MONDO:0007433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dementia/parkinsonism with non-Alzheimer amyloid plaques","secondary_identifiers":["MESH:C565115","MEDGEN:338883","OMIM:125320","UMLS:C1852223"],"synonyms":[{"name":"dementia/parkinsonism with non-Alzheimer amyloid plaques","type":"exact"}],"termid":"MONDO:0007433","xrefs":{"Monarch":{"xref_id":"0007433"}}}


id: PBO:0045612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 23 (pseudogene)","termid":"PBO:0045612"}


id: PBO:0030740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_cell_during_nitrogen_starvation","termid":"PBO:0030740"}


id: PBO:0003778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA R39b (predicted)","termid":"PBO:0003778"}


id: PBO:0063871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class C","termid":"PBO:0063871"}


id: PBO:0027880
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_H4-K20_monomethylation","termid":"PBO:0027880"}


id: PBO:0048824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 10","termid":"PBO:0048824"}


id: PBO:0077931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPTE2 pseudogene 4","termid":"PBO:0077931"}


id: PBO:0018031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint protein Mad2","termid":"PBO:0018031"}


id: GO:0120082
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A subcompartment of the smooth endoplasmic reticulum consisting of lumenal expansion into a flattened, disc-shaped cavity.","definition_xrefs":["PMID:12112448","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"smooth endoplasmic reticulum","termid":"GO:0005790"},{"relation_name":"part_of","term_name":"endoplasmic reticulum cisternal network","termid":"GO:0071781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005783","GO:0005737"],"is_obsolete":false,"name":"smooth endoplasmic reticulum cisterna","termid":"GO:0120082"}


id: PBO:0070582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 48","termid":"PBO:0070582"}


id: PBO:0039465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 13B","termid":"PBO:0039465"}


id: GO:0006158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete deoxyadenosine deaminase reaction (obsolete GO:0006158)","synonyms":[{"name":"deoxyadenosine deaminase reaction","type":"exact"}],"termid":"GO:0006158"}


id: GO:7770006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cholate + L-phenylalanine = L-phenylalanocholate + H2O.","definition_xrefs":["RHEA:79123","PMID:38326608"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid conjugated cholate hydrolase activity","termid":"GO:7770003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"L-phenylalanine conjugated cholate hydrolase activity","termid":"GO:7770006"}


id: PBO:0114090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase peripheral stalk subunit OSCP Atp5","termid":"PBO:0114090"}


id: PBO:0087424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit A of the V1 peripheral membrane domain of V-ATPase; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner","termid":"PBO:0087424"}


id: MONDO:0013411
data:
  {"annotated_genes":["SJAG_04567","SJAG_02919","SJAG_03815"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88909,88910,88911],"is_not":false,"summary":null,"term":"MONDO:0013411"}]},"cv_name":"mondo","definition":"Any early-onset non-syndromic cataract in which the cause of the disease is a mutation in the CRYAB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset zonular cataract","termid":"MONDO:0020379"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02919":null,"SJAG_03815":null,"SJAG_04567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 16 multiple types","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:613763","DOID:0110250","MESH:C565134","MEDGEN:814707","UMLS:C3808377"],"synonyms":[{"name":"CRYAB early-onset non-syndromic cataract","type":"exact"},{"name":"CTPP2","type":"narrow"},{"name":"CTRCT16","type":"exact"},{"name":"cataract 16, multiple types","type":"related"},{"name":"cataract, congenital lamellar","type":"related"},{"name":"cataract, posterior polar, 2","type":"related"},{"name":"early-onset non-syndromic cataract caused by mutation in CRYAB","type":"exact"},{"name":"posterior polar cataract 2","type":"narrow"}],"termid":"MONDO:0013411","terms_by_termid":{"MONDO:0013411":null},"xrefs":{"Monarch":{"xref_id":"0013411"}}}


id: GO:0075027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of symbiont appressorium initiation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of appressorium initiation (obsolete GO:0075027)","synonyms":[{"name":"positive regulation of appressorium initiation on or near host","type":"related"},{"name":"positive regulation of initiation of appressorium on or near host","type":"exact"}],"termid":"GO:0075027"}


id: MONDO:0859191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biliary, renal, neurologic, and skeletal syndrome","secondary_identifiers":["UMLS:C5561990","MEDGEN:1794200","OMIM:619534"],"termid":"MONDO:0859191","xrefs":{"Monarch":{"xref_id":"0859191"}}}


id: PBO:0052428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIT ligand","termid":"PBO:0052428"}


id: PBO:0082221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha aminoadipate reductase; catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p","termid":"PBO:0082221"}


id: GO:0046873
data:
  {"annotated_genes":["SJAG_04616","SJAG_04260","SJAG_01803","SJAG_04698","SJAG_04167","SJAG_04028","SJAG_02968","SJAG_04675","SJAG_05229","SJAG_01400","SJAG_04111","SJAG_04185","SJAG_01007","SJAG_02532","SJAG_03850","SJAG_01493","SJAG_04830","SJAG_03401","SJAG_01639","SJAG_03516","SJAG_02322","SJAG_04246","SJAG_00211","SJAG_01119","SJAG_02877","SJAG_00328","SJAG_02883","SJAG_04668","SJAG_04737","SJAG_00222","SJAG_03528","SJAG_02019","SJAG_04471","SJAG_04867","SJAG_02578","SJAG_04096","SJAG_01990","SJAG_01090","SJAG_01353","SJAG_02399","SJAG_03079","SJAG_01541","SJAG_02473","SJAG_02484","SJAG_01078"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015410"},{"annotations":[74370,79210,116497],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[111418],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015085"},{"annotations":[72072,80354,93212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015369"},{"annotations":[58537,103507,63260,63224],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005375"},{"annotations":[72221,105810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015093"},{"annotations":[76403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[94459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061840"},{"annotations":[81865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044750"},{"annotations":[72620,74171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140107"},{"annotations":[106193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000006"},{"annotations":[67780,115853,115270],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005381"},{"annotations":[57295,77538,119039,76440,72256,79388],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015095"},{"annotations":[75646,77702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005384"},{"annotations":[93213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010486"},{"annotations":[73388,82171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005388"},{"annotations":[79778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043682"},{"annotations":[109893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140581"},{"annotations":[114407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008900"},{"annotations":[75540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008554"},{"annotations":[75366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015379"},{"annotations":[81990],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015386"},{"annotations":[80042,81989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015385"},{"annotations":[94358,115984,94416,101644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[106334,116404,76691,79140,80249,77856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005385"}]},"cv_name":"molecular_function","definition":"Enables the transfer of metal ions from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transporter activity","termid":"GO:0008324"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transporter 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ion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"heavy metal ion porter activity","type":"narrow"},{"name":"heavy metal ion transporter activity","type":"narrow"},{"name":"heavy metal ion:hydrogen symporter activity","type":"narrow"},{"name":"heavy metal-exporting ATPase activity","type":"narrow"},{"name":"high affinity metal ion uptake transporter activity","type":"narrow"},{"name":"low affinity metal ion uptake transporter activity","type":"narrow"}],"termid":"GO:0046873","terms_by_termid":{"GO:0000006":null,"GO:0005262":null,"GO:0005375":null,"GO:0005381":null,"GO:0005384":null,"GO:0005385":null,"GO:0005388":null,"GO:0008331":null,"GO:0008554":null,"GO:0008900":null,"GO:0010486":null,"GO:0015085":null,"GO:0015093":null,"GO:0015095":null,"GO:0015275":null,"GO:0015369":null,"GO:0015379":null,"GO:0015385":null,"GO:0015386":null,"GO:0015410":null,"GO:0043682":null,"GO:0044750":null,"GO:0061840":null,"GO:0140107":null,"GO:0140581":null}}


id: MONDO:0021161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An prostatitis (disease) caused by infection with Neisseria gonorrhoeae.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gonorrhea","termid":"MONDO:0004277"},{"relation_name":"is_a","term_name":"prostatitis","termid":"MONDO:0005280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gonococcal prostatitis","secondary_identifiers":["UMLS:C0341755","ICD10CM:A54.22","icd11.foundation:1032655599","SCTID:197967000","MEDGEN:574622"],"synonyms":[{"name":"Neisseria gonorrhoeae caused prostatitis (disease)","type":"exact"},{"name":"Neisseria gonorrhoeae prostatitis (disease)","type":"exact"}],"termid":"MONDO:0021161","xrefs":{"Monarch":{"xref_id":"0021161"}}}


id: GO:2001025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to drug","termid":"GO:2001023"},{"relation_name":"positively_regulates","term_name":"response to xenobiotic stimulus","termid":"GO:0009410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to drug","synonyms":[{"name":"positive regulation of drug resistance","type":"related"},{"name":"positive regulation of drug susceptibility/resistance","type":"related"}],"termid":"GO:2001025"}


id: SO:0001756
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SL2_acceptor_site","termid":"SO:0000709"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SL11_acceptor_site","synonyms":[{"name":"SL11 acceptor site","type":"exact"}],"termid":"SO:0001756"}


id: GO:0102394
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S,3R,4S)-4-hydroxy-L-isoleucine + NAD = (2S,3R)-2-amino-3-methyl-4-ketopentanoate + NADH + H+.","definition_xrefs":["GOC:pz","PMID:21069315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"4-hydroxy-L-isoleucine dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-13637"],"termid":"GO:0102394"}


id: GO:0160229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a peroxisome and an ER membrane, either via membrane lipid binding or by interacting with a membrane protein.","definition_xrefs":["PMID:39271061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum-organelle membrane tether activity","termid":"GO:0170009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0003674","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"peroxisome-endoplasmic reticulum membrane tether activity","termid":"GO:0160229"}


id: PBO:0005148
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.1.17","termid":"PBO:0005148"}


id: GO:0031474
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A myosin complex containing one or more class IV myosin heavy chains and associated light chains; myosin IV is relatively uncharacterized, but is predicted to have a single motor domain, one IQ motif and a tail with a Myosin Tail Homology (myTH4) domain homologous to that in the tails of myosins VII and XV.","definition_xrefs":["Wikipedia:Myosin"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unconventional myosin complex","termid":"GO:0016461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015629"],"is_obsolete":false,"name":"myosin IV complex","termid":"GO:0031474"}


id: GO:0052167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host immune response","termid":"GO:0052553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host innate immune response","secondary_identifiers":["GO:0052306"],"synonyms":[{"name":"modulation by organism of innate immune response in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of host innate immunity","type":"exact"},{"name":"modulation of host innate immune response","type":"exact"},{"name":"perturbation of host innate immune response","type":"exact"}],"termid":"GO:0052167"}


id: PR:O36014
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aspartyl aminopeptidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10761:SF2","PRO:DNx","OMA:SCHPO02005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartyl aminopeptidase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.02","secondary_identifiers":["UniProtKB:O36014"],"synonyms":[{"name":"Spom972h-DNPEP","type":"exact"}],"termid":"PR:O36014"}


id: PBO:0087214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine synthetase; catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; comparative analysis suggests that a mitochondrially targeted form may result from translation starting at a non-canonical codon upstream of the annotated start codon","termid":"PBO:0087214"}


