# terms

id: MOD:00847
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes two (18)O atom for two (16)O atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(18)O substituted residue","termid":"MOD:00845"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O disubstituted residue","termid":"MOD:00847"}


id: GO:0015381
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the secondary active high affinity transfer of sulfate from one side of a membrane to the other. Secondary active transport is the transfer of a solute across a membrane, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. In high-affinity transport the transporter is able to bind thesolute even if it is only present at very low concentrations.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active sulfate transmembrane transporter activity","termid":"GO:0008271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"high-affinity sulfate transmembrane transporter activity","synonyms":[{"name":"high affinity sulfate permease activity","type":"related"},{"name":"high affinity sulfate transmembrane transporter activity","type":"exact"},{"name":"high affinity sulphate permease activity","type":"exact"}],"termid":"GO:0015381"}


id: PBO:0057003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 96","termid":"PBO:0057003"}


id: PBO:0059566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1I, pseudogene","termid":"PBO:0059566"}


id: PBO:0086867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative serine/threonine protein kinase; regulates spermine uptake; involved in polyamine transport; possible mitochondrial protein; PTK1 has a paralog, PTK2, that arose from the whole genome duplication","termid":"PBO:0086867"}


id: GO:0042065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Growth of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system.","definition_xrefs":["GOC:jid","GOC:dph","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"gliogenesis","termid":"GO:0042063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glial cell growth","termid":"GO:0042065"}


id: MONDO:0032584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia 14, hair/tooth type with or without hypohidrosis","secondary_identifiers":["MEDGEN:1648329","UMLS:C4748560","OMIM:618180","DOID:0111662","Orphanet:685067"],"synonyms":[{"name":"ECTD14","type":"related"},{"name":"ECTODERMAL DYSPLASIA 14, HAIR/TOOTH TYPE WITH OR WITHOUT HYPOHIDROSIS","type":"related"}],"termid":"MONDO:0032584","xrefs":{"Monarch":{"xref_id":"0032584"}}}


id: PBO:0061306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropeptide FF-amide peptide precursor","termid":"PBO:0061306"}


id: MONDO:0014807
data:
  {"annotated_genes":["SJAG_03106"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87782],"is_not":false,"summary":null,"term":"MONDO:0014807"}]},"cv_name":"mondo","definition":"Any prenatal-onset spinal muscular atrophy with congenital bone fractures in which the cause of the disease is a mutation in the ASCC1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenatal-onset spinal muscular atrophy with congenital bone fractures","termid":"MONDO:0000209"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03106":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002320"],"is_obsolete":false,"name":"spinal muscular atrophy with congenital bone fractures 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4225176","MEDGEN:907910","OMIM:616867","GARD:18495"],"synonyms":[{"name":"ASCC1 prenatal-onset spinal muscular atrophy with congenital bone fractures","type":"exact"},{"name":"SMABF2","type":"exact"},{"name":"prenatal-onset spinal muscular atrophy with congenital bone fractures caused by mutation in ASCC1","type":"exact"},{"name":"spinal muscular atrophy with congenital bone fractures 2","type":"exact"},{"name":"spinal muscular atrophy with congenital bone fractures type 2","type":"exact"}],"termid":"MONDO:0014807","terms_by_termid":{"MONDO:0014807":null},"xrefs":{"Monarch":{"xref_id":"0014807"}}}


id: GO:1903902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of viral life cycle.","definition_xrefs":["GO_REF:0000058","PMID:18005716","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of viral process","termid":"GO:0048524"},{"relation_name":"is_a","term_name":"regulation of viral life cycle","termid":"GO:1903900"},{"relation_name":"positively_regulates","term_name":"viral life cycle","termid":"GO:0019058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of viral life cycle","synonyms":[{"name":"activation of lytic viral life cycle","type":"related"},{"name":"activation of viral assembly, maturation, egress, and release","type":"narrow"},{"name":"activation of viral infectious cycle","type":"related"},{"name":"activation of viral life cycle","type":"narrow"},{"name":"activation of viral replication","type":"related"},{"name":"positive regulation of lytic viral life cycle","type":"related"},{"name":"positive regulation of viral assembly, maturation, egress, and release","type":"narrow"},{"name":"positive regulation of viral infectious cycle","type":"related"},{"name":"positive regulation of viral replication","type":"related"},{"name":"up regulation of lytic viral life cycle","type":"related"},{"name":"up regulation of viral assembly, maturation, egress, and release","type":"narrow"},{"name":"up regulation of viral infectious cycle","type":"related"},{"name":"up regulation of viral life cycle","type":"exact"},{"name":"up regulation of viral replication","type":"related"},{"name":"up-regulation of lytic viral life cycle","type":"related"},{"name":"up-regulation of viral assembly, maturation, egress, and release","type":"narrow"},{"name":"up-regulation of viral infectious cycle","type":"related"},{"name":"up-regulation of viral life cycle","type":"exact"},{"name":"up-regulation of viral replication","type":"related"},{"name":"upregulation of lytic viral life cycle","type":"related"},{"name":"upregulation of viral assembly, maturation, egress, and release","type":"narrow"},{"name":"upregulation of viral infectious cycle","type":"related"},{"name":"upregulation of viral life cycle","type":"exact"},{"name":"upregulation of viral replication","type":"related"}],"termid":"GO:1903902"}


id: GO:0140715
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric enzyme complex that catalyzes the ligation of serine to tRNA(Ser), forming L-seryl-tRNA(Ser).","definition_xrefs":["PMID:30943413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"serine-tRNA ligase complex","termid":"GO:0140715"}


id: PBO:0049562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B.K variant histone 1","termid":"PBO:0049562"}


id: PBO:0080927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 5","termid":"PBO:0080927"}


id: PBO:0089466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane sensing transcription coactivator, ankyrin repeat containing Mga2","termid":"PBO:0089466"}


id: PBO:0042001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 54","termid":"PBO:0042001"}


id: PBO:0000554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Glutamic acid","termid":"PBO:0000554"}


id: PATO:0000637
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000637 structure value (obsolete PATO:0000637)","termid":"PATO:0000637"}


id: GO:0070222
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A sulfide oxidation process that proceeds via the reaction catalyzed by sulfide dehydrogenase.","definition_xrefs":["MetaCyc:PWY-5274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfide oxidation","termid":"GO:0019418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"sulfide oxidation, using sulfide dehydrogenase","synonyms":[{"name":"sulphide oxidation, using sulfide dehydrogenase","type":"exact"}],"termid":"GO:0070222"}


id: PBO:0074223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 45 member 2","termid":"PBO:0074223"}


id: PBO:0071522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 25","termid":"PBO:0071522"}


id: GO:0098505
data:
  {"annotated_genes":["SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79000],"is_not":false,"summary":null,"term":"GO:0098505"}]},"cv_name":"molecular_function","definition":"Binding to G-rich, single-stranded, telomere-associated DNA.","definition_xrefs":["PMID:11349150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-stranded telomeric DNA binding","termid":"GO:0043047"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"G-rich strand telomeric DNA binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0098505","terms_by_termid":{"GO:0098505":null}}


id: PBO:0070184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 102 pseudogene","termid":"PBO:0070184"}


id: GO:0047331
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycerol + diphosphate = glycerol 1-phosphate + H+ + phosphate.","definition_xrefs":["RHEA:13689","EC:2.7.1.79"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"diphosphate-glycerol phosphotransferase activity","secondary_identifiers":["MetaCyc:2.7.1.79-RXN","KEGG_REACTION:R01044"],"synonyms":[{"name":"PPi-glycerol phosphotransferase activity","type":"related"},{"name":"diphosphate:glycerol 1-phosphotransferase activity","type":"related"},{"name":"pyrophosphate--glycerol phosphotransferase activity","type":"related"}],"termid":"GO:0047331"}


id: PBO:0090494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rix1 complex WD repeat subunit Crb3","termid":"PBO:0090494"}


id: GO:0071709
data:
  {"annotated_genes":["SJAG_00900","SJAG_00663","SJAG_04489","SJAG_02241","SJAG_02529","SJAG_00114","SJAG_03536","SJAG_03688","SJAG_04275","SJAG_04615","SJAG_00826","SJAG_01050","SJAG_02169","SJAG_01467","SJAG_02248","SJAG_03891","SJAG_04781","SJAG_04080","SJAG_04010","SJAG_01242","SJAG_01769","SJAG_00971","SJAG_03892","SJAG_02320","SJAG_02736","SJAG_03783","SJAG_04470","SJAG_03915","SJAG_00416","SJAG_03746","SJAG_04922","SJAG_05207","SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97385,115988,101921,109420,120616,120917,121100,99563,93300,99600,100842,112162,107315,103729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032120"},{"annotations":[121414,99968,121413,97976,121412,108594,121411,93353,105163,102912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007084"},{"annotations":[74066],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031468"},{"annotations":[92735],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[118994],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903023"},{"annotations":[102140,101852,101853,96516,108042,118031],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"membrane biogenesis","termid":"GO:0044091"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00416":null,"SJAG_00663":null,"SJAG_00826":null,"SJAG_00900":null,"SJAG_00971":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01467":null,"SJAG_01745":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02529":null,"SJAG_02736":null,"SJAG_03536":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03783":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04489":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04922":null,"SJAG_05207":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0044085"],"is_obsolete":false,"name":"membrane assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:32243490":null},"termid":"GO:0071709","terms_by_termid":{"GO:0007084":null,"GO:0031468":null,"GO:0032120":null,"GO:0070583":null,"GO:1903023":null,"GO:1903024":null}}


id: PBO:0031456
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_staurosporine","termid":"PBO:0031456"}


id: GO:0031027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that in yeast consists of a large and a small subunit. Possesses glutamate synthase (NADH) activity.","definition_xrefs":["GOC:jl","PMID:7047525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate synthase complex","termid":"GO:0031026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"glutamate synthase complex (NADH)","termid":"GO:0031027"}


id: PBO:0073608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid acetylesterase","termid":"PBO:0073608"}


id: MONDO:0013413
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the CNGB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"},{"relation_name":"is_a","term_name":"CNGB1-related retinopathy","termid":"MONDO:0800403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 45","secondary_identifiers":["ICD10CM:H35.5","GARD:15704","DOID:0110402","MEDGEN:462416","OMIM:613767","UMLS:C3151066"],"synonyms":[{"name":"CNGB1 retinitis pigmentosa","type":"exact"},{"name":"RP45","type":"exact"},{"name":"retinitis pigmentosa 45","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in CNGB1","type":"exact"},{"name":"retinitis pigmentosa type 45","type":"exact"}],"termid":"MONDO:0013413","xrefs":{"Monarch":{"xref_id":"0013413"}}}


id: PR:Q9P7G9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenylyl-sulfate kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl-sulfate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.11","secondary_identifiers":["UniProtKB:Q9P7G9"],"synonyms":[{"name":"APS kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ATP adenosine-5'-phosphosulfate 3'-phosphotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cysC","type":"exact"},{"name":"adenosine-5'-phosphosulfate kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7G9"}


id: PBO:0091300
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retention of intron IV leads to production of tandem hydrolase/cardiolipin fusion protein","termid":"PBO:0091300"}


id: PBO:0060769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B5","termid":"PBO:0060769"}


id: GO:1904881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen sulfide stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:24012591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to hydrogen sulfide","termid":"GO:1904880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to hydrogen sulfide","synonyms":[{"name":"cellular response to dihydridosulfur","type":"exact"},{"name":"cellular response to sulfane","type":"exact"}],"termid":"GO:1904881"}


id: PBO:0066200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 17 pseudogene 1","termid":"PBO:0066200"}


id: GO:0038179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by neurotrophin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. Neurotrophins are a family of secreted growth factors that induce the survival, development, and function of neurons.","definition_xrefs":["Wikipedia:Neurotrophin","GOC:jc","GOC:signaling","GOC:bf","PMID:17466268"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"},{"relation_name":"part_of","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"neurotrophin signaling pathway","synonyms":[{"name":"neurotrophin receptor signaling pathway","type":"exact"}],"termid":"GO:0038179"}


id: GO:0051790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.","definition_xrefs":["Wikipedia:Fatty_acid_metabolism"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid biosynthetic process","termid":"GO:0006633"},{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"short-chain fatty acid biosynthetic process","synonyms":[{"name":"short chain fatty acid biosynthesis","type":"exact"},{"name":"short chain fatty acid biosynthetic process","type":"exact"},{"name":"short-chain fatty acid anabolism","type":"exact"},{"name":"short-chain fatty acid biosynthesis","type":"exact"},{"name":"short-chain fatty acid formation","type":"exact"},{"name":"short-chain fatty acid synthesis","type":"exact"}],"termid":"GO:0051790"}


id: FYPO:0004104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, and shaped in the form of a sphere.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"inviable spheroid vegetative cell","termid":"FYPO:0002482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"inviable spherical vegetative cell","synonyms":[{"name":"inviable spherical cell","type":"exact"},{"name":"inviable spherical cell during vegetative growth","type":"exact"},{"name":"inviable spherical vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; spherical vegetative cell","type":"exact"},{"name":"spherical inviable cell","type":"exact"}],"termid":"FYPO:0004104"}


id: FYPO:0002678
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121285,121293],"is_not":false,"summary":null,"term":"FYPO:0002678"},{"annotations":[121292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation","termid":"FYPO:0002677"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_04551":null},"genotype_count":2,"genotypes_by_uniquename":{"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein phosphorylation","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_00610"],"single_locus_genotype_uniquenames":["pck2delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"protein phosphorylation abolished","type":"exact"}],"termid":"FYPO:0002678","terms_by_termid":{"FYECO:0000207":null,"FYPO:0002033":null,"FYPO:0002678":null}}


id: GO:0031582
data:
  {"annotated_genes":["SJAG_03997","SJAG_00247","SJAG_04671","SJAG_04855"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101374,104291,117084],"is_not":false,"summary":null,"term":"GO:0031582"},{"annotations":[105244],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"}]},"cv_name":"biological_process","definition":"A process that impedes the progress of the DNA replication fork at natural replication fork pausing sites within the eukaryotic rDNA repeat spacer.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of rDNA","termid":"GO:0043007"},{"relation_name":"is_a","term_name":"replication fork arrest","termid":"GO:0043111"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_03997":null,"SJAG_04671":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"replication fork arrest at rDNA repeats","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"replication fork arrest at ribosomal DNA repeats","type":"exact"},{"name":"replication fork blocking at rDNA repeats","type":"exact"}],"termid":"GO:0031582","terms_by_termid":{"GO:0031582":null,"GO:1902681":null}}


id: GO:1904924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of mitophagy in response to mitochondrial depolarization.","definition_xrefs":["PMID:22020285"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mitophagy in response to mitochondrial depolarization (obsolete GO:1904924)","termid":"GO:1904924"}


id: PBO:0068827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 65, pseudogene","termid":"PBO:0068827"}


id: PBO:0064225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLCE1 antisense RNA 2","termid":"PBO:0064225"}


id: MONDO:0003068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the postauricular lymph nodes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphadenitis","termid":"MONDO:0002052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"postauricular lymphadenitis","secondary_identifiers":["NCIT:C27332","DOID:4638","MEDGEN:183076","UMLS:C0919638"],"synonyms":[{"name":"lymphadenitis (disease) of mastoid lymph node","type":"exact"},{"name":"mastoid lymph node lymphadenitis (disease)","type":"exact"}],"termid":"MONDO:0003068","xrefs":{"Monarch":{"xref_id":"0003068"}}}


id: FYPO:0003778
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum tubular network is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to endoplasmic reticulum tubular network","synonyms":[{"name":"decreased protein localisation to endoplasmic reticulum tubular network","type":"exact"},{"name":"decreased protein localization to ER tubular network","type":"exact"},{"name":"decreased protein localization to endoplasmic reticulum tubular network during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to endoplasmic reticulum tubular network during vegetative growth","type":"exact"},{"name":"decreased protein localization to tubular ER","type":"exact"},{"name":"reduced protein localization to endoplasmic reticulum tubular network","type":"exact"}],"termid":"FYPO:0003778"}


id: GO:0072385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an organelle towards the minus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an organelle to a microtubule, and ends when the organelle reaches its final destination.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle transport along microtubule","termid":"GO:0072384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"minus-end-directed organelle transport along microtubule","synonyms":[{"name":"microtubule minus-end-directed organelle distribution","type":"narrow"},{"name":"microtubule minus-end-directed organelle localization","type":"exact"}],"termid":"GO:0072385"}


id: PBO:0056186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin associated glycoprotein","termid":"PBO:0056186"}


id: PBO:0074012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 6 pseudogene 3","termid":"PBO:0074012"}


id: PBO:0089254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siroheme synthase Met8","termid":"PBO:0089254"}


id: MONDO:0011648
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radiation-induced meningioma","secondary_identifiers":["MEDGEN:381204","GARD:8491","MESH:C536266","OMIM:606190","UMLS:C1853554"],"synonyms":[{"name":"Mnri","type":"related"},{"name":"meningioma, radiation-induced","type":"related"},{"name":"radiation induced meningioma","type":"related"}],"termid":"MONDO:0011648","xrefs":{"Monarch":{"xref_id":"0011648"}}}


id: FYPO:0008349
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 5'-nucleotidase activity is abnormal.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"abnormal 5'-nucleotidase activity","termid":"FYPO:0008349"}


id: PBO:0013791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymidylate synthase/ flavoprotein fusion protein Hal3","termid":"PBO:0013791"}


id: PBO:0074591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 5C","termid":"PBO:0074591"}


id: PBO:0045759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin converting enzyme like 1 pseudogene 3","termid":"PBO:0045759"}


id: GO:0036239
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: taxusin + [reduced NADPH-hemoprotein reductase] + O2 = 7beta-hydroxytaxusin + [oxidized NADPH-hemoprotein reductase] + H2O. Also converts 2alpha-hydroxytaxusin to 2alpha,7beta-dihydroxytaxusin.","definition_xrefs":["PMID:15178487","PMID:15157877","EC:1.14.14.182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"taxoid 7beta-hydroxylase activity","secondary_identifiers":["KEGG_REACTION:R09868"],"termid":"GO:0036239"}


id: GO:0097067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroid hormone stimulus.","definition_xrefs":["PMID:9916872","GOC:sjw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to thyroid hormone","termid":"GO:0097066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to thyroid hormone stimulus","termid":"GO:0097067"}


id: PBO:0034686
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nucleosome_occupancy_in_euchromatin","termid":"PBO:0034686"}


id: PATO:0000074
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000074 shattering (obsolete PATO:0000074)","termid":"PATO:0000074"}


id: MONDO:0100520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The NKX2-1 gene is located on chromosome 14 at 14q13.3 and encodes the NK2 homeobox 1 protein, a transcription factor that binds and activates thyroid specific genes. NKX2-1 was first reported in relation to autosomal dominant NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction in 1998.","definition_xrefs":["PMID:9565498"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction","termid":"MONDO:0100520","xrefs":{"Monarch":{"xref_id":"0100520"}}}


id: PBO:0036298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein Atg101","termid":"PBO:0036298"}


id: GO:0047174
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: caffeoyl-CoA + putrescine = N-caffeoylputrescine + CoA + H+.","definition_xrefs":["RHEA:12436","EC:2.3.1.138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"},{"relation_name":"is_a","term_name":"hydroxycinnamoyltransferase activity","termid":"GO:0050734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"putrescine N-hydroxycinnamoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01944","MetaCyc:2.3.1.138-RXN"],"synonyms":[{"name":"PHT","type":"related"},{"name":"caffeoyl-CoA putrescine N-caffeoyl transferase activity","type":"related"},{"name":"caffeoyl-CoA:putrescine N-(3,4-dihydroxycinnamoyl)transferase activity","type":"related"},{"name":"hydroxycinnamoyl-CoA:putrescine hydroxycinnamoyltransferase activity","type":"related"},{"name":"putrescine hydroxycinnamoyl transferase activity","type":"related"},{"name":"putrescine hydroxycinnamoyltransferase activity","type":"related"}],"termid":"GO:0047174"}


id: PBO:0045335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DOCK9 antisense RNA 1","termid":"PBO:0045335"}


id: PBO:0086425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene","termid":"PBO:0086425"}


id: PBO:0062660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily D member 1","termid":"PBO:0062660"}


id: GO:1990310
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type-III dockerin domain of a protein. Type-III dockerin domain is the binding partner of type-III cohesin domain.","definition_xrefs":["PMID:24080387","PMID:23195689","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"type-III dockerin domain binding","termid":"GO:1990310"}


id: PBO:0059606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 18","termid":"PBO:0059606"}


id: PBO:0045505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dentin sialophosphoprotein","termid":"PBO:0045505"}


id: FYPO:0007876
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the plasma membrane is smoother than normal at the shmoo tip. Normally, the plasma membrane of one of a pair of mating cells is slack shmoo tip, forming waves instead of a smooth arc.","definition_xrefs":["PomBase:mah","PMID:34382996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased plasma membrane waviness at shmoo tip","synonyms":[{"name":"abnormally smooth plasma membrane at shmoo tip","type":"related"},{"name":"decreased plasma membrane waviness at mating projection tip","type":"exact"},{"name":"decreased plasma membrane waviness at shmoo projection","type":"exact"},{"name":"reduced plasma membrane waviness at shmoo tip","type":"exact"}],"termid":"FYPO:0007876"}


id: PBO:0119345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quiescence-related, ribosome-interacting, mRNA-binding non-coding RNA Aal1","termid":"PBO:0119345"}


id: MONDO:0005212
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859046"}]},"cv_name":"mondo","definition":"A rare aggressive malignant mesenchymal neoplasm arising from skeletal muscle. It usually occurs in children and young adults. Only a small percentage of tumors arise in the skeletal muscle of the extremities. The majority arise in other anatomical sites.","definition_xrefs":["NCIT:C3359"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skeletal muscle cancer","termid":"MONDO:0002847"},{"relation_name":"excluded_subClassOf","term_name":"obsolete muscular tumor (obsolete MONDO:0016123)","termid":"MONDO:0016123"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"rhabdomyosarcoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["HP:0002859","MedDRA:10039022","EFO:0002918","MEDGEN:20561","MESH:D012208","UMLS:C0035412","NANDO:2200056","DOID:3247","Orphanet:780","ONCOTREE:RMS","ICD9:171.9","SCTID:302847003","ICDO:8900/3","GARD:11951"],"synonyms":[{"name":"rhabdomyosarcoma","type":"exact"},{"name":"rhabdomyosarcoma (disease)","type":"exact"},{"name":"rhabdomyosarcoma, malignant","type":"exact"}],"termid":"MONDO:0005212","terms_by_termid":{"MONDO:0859046":null},"xrefs":{"Monarch":{"xref_id":"0005212"}}}


id: PBO:0053964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1273","termid":"PBO:0053964"}


id: MONDO:1012895
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inherited macrothrombocytopenia that occurs in dogs due to a mutation in the TUBB1 gene.","definition_xrefs":["PMID:18466252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thrombocytopenia, dog","termid":"MONDO:1010659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombocytopenia, TUBB1-related, dog","secondary_identifiers":["OMIA:002434-9615"],"termid":"MONDO:1012895","xrefs":{"Monarch":{"xref_id":"1012895"}}}


id: MONDO:0011863
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer aggressiveness quantitative trait locus on chromosome 19","secondary_identifiers":["OMIM:607592","MEDGEN:334432","UMLS:C1843533"],"synonyms":[{"name":"HPCqtl19","type":"related"},{"name":"prostate cancer aggressiveness QTL","type":"exact"},{"name":"prostate cancer aggressiveness quantitative trait locus on chromosome 19","type":"exact"},{"name":"prostate cancer aggressiveness quantitative trait locus on chromosome type 19","type":"exact"}],"termid":"MONDO:0011863","xrefs":{"Monarch":{"xref_id":"0011863"}}}


id: PBO:0066065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor associated protein of the synapse","termid":"PBO:0066065"}


id: PBO:0048656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein epsilon 1","termid":"PBO:0048656"}


id: MONDO:0009922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudouridinuria and mental defect","secondary_identifiers":["MEDGEN:376629","UMLS:C1849648","OMIM:264500","MESH:C564864"],"synonyms":[{"name":"Pseudouridinuria and mental defect","type":"exact"}],"termid":"MONDO:0009922","xrefs":{"Monarch":{"xref_id":"0009922"}}}


id: FYPO:0007943
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of chromatin organization is abnormal during the meiotic cell cycle. Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization","termid":"FYPO:0000642"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome organization","termid":"FYPO:0006759"},{"relation_name":"is_a","term_name":"abnormal cellular process during meiotic cell cycle","termid":"FYPO:0007260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000641","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal chromatin organization during meiotic cell cycle","termid":"FYPO:0007943"}


id: PBO:0088953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane adaptor for ubiquitin ligase Rcr1","termid":"PBO:0088953"}


id: MONDO:1012805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cerebellar ataxia that occurs in dogs due to a mutation in the SCN8A gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar ataxia, dog","termid":"MONDO:1012957"},{"relation_name":"is_a","term_name":"hereditary cerebellar ataxia, non-human animal","termid":"MONDO:1012960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinocerebellar ataxia, SCN8A-related, dog","secondary_identifiers":["OMIA:002194-9615"],"synonyms":[{"name":"ataxia, spinocerebellar, SCN8A-related, dog","type":"exact"}],"termid":"MONDO:1012805","xrefs":{"Monarch":{"xref_id":"1012805"}}}


id: PBO:0081380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 221","termid":"PBO:0081380"}


id: PBO:0070930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 38","termid":"PBO:0070930"}


id: PR:G2TRP3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ymr31 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRP3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein YMR-31, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.14","synonyms":[{"name":"Spom972h-ymr31","type":"exact"}],"termid":"PR:G2TRP3"}


id: FYPO:0005314
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at promoters that contain MCB sites is decreased.","definition_xrefs":["PMID:26912660","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin at promoter","termid":"FYPO:0007505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to chromatin at MCB promoters during vegetative growth","synonyms":[{"name":"decreased protein localisation to chromatin at MCB promoters during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromatin at MCB promoters during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at MCB target genes during vegetative growth","type":"related"},{"name":"decreased protein localization to chromatin at MCB-containing promoters during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at MCB promoters during vegetative growth","type":"exact"}],"termid":"FYPO:0005314"}


id: MONDO:0021086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the upper or lower gingiva.","definition_xrefs":["NCIT:C3057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gingival disorder","termid":"MONDO:0002021"},{"relation_name":"is_a","term_name":"odontogenic neoplasm","termid":"MONDO:0021192"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gingival neoplasm","secondary_identifiers":["MEDGEN:6605","SCTID:126792007","UMLS:C0017570"],"synonyms":[{"name":"gingiva neoplasm","type":"exact"},{"name":"gingiva neoplasm (disease)","type":"exact"},{"name":"gingiva tumor","type":"exact"},{"name":"gingiva tumour","type":"exact"},{"name":"gingival neoplasm","type":"exact"},{"name":"gingival tumor","type":"exact"},{"name":"gingival tumour","type":"exact"},{"name":"gum neoplasm","type":"exact"},{"name":"gum tumor","type":"exact"},{"name":"gum tumour","type":"exact"},{"name":"neoplasm of gingiva","type":"exact"},{"name":"neoplasm of gum","type":"exact"},{"name":"neoplasm of the gingiva","type":"exact"},{"name":"neoplasm of the gum","type":"exact"},{"name":"tumor of gingiva","type":"exact"},{"name":"tumor of gum","type":"exact"},{"name":"tumor of the gingiva","type":"exact"},{"name":"tumor of the gum","type":"exact"},{"name":"tumour of gingiva","type":"exact"},{"name":"tumour of gum","type":"exact"},{"name":"tumour of the gingiva","type":"exact"},{"name":"tumour of the gum","type":"exact"}],"termid":"MONDO:0021086","xrefs":{"Monarch":{"xref_id":"0021086"}}}


id: FYPO:0005745
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype in which the export of protein from the nucleus is abnormal. Export of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear transport","termid":"FYPO:0005573"},{"relation_name":"is_a","term_name":"abnormal protein transport","termid":"FYPO:0005744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein export from nucleus","termid":"FYPO:0005745"}


id: PBO:0044122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 8","termid":"PBO:0044122"}


id: PBO:0036429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding metalloprotease involved in DNA-protein crosslink removal (predicted)","termid":"PBO:0036429"}


id: PBO:0116787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP69B divergent transcript","termid":"PBO:0116787"}


id: PBO:0071831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 26","termid":"PBO:0071831"}


id: GO:0098659
data:
  {"annotated_genes":["SJAG_01493","SJAG_02883","SJAG_01090","SJAG_04185","SJAG_04830","SJAG_01353","SJAG_05229","SJAG_00296","SJAG_02968","SJAG_03631","SJAG_04731","SJAG_04551","SJAG_02877","SJAG_04246","SJAG_04136","SJAG_04668"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101264,121086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140157"},{"annotations":[76405,68441,94409,116496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[116647,89948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098705"},{"annotations":[115268],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098711"},{"annotations":[93227,115419],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[81866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098716"},{"annotations":[104162],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905665"},{"annotations":[74173,72622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990573"},{"annotations":[106192,115269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071578"}]},"cv_name":"biological_process","definition":"The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"},{"relation_name":"is_a","term_name":"inorganic ion import across plasma membrane","termid":"GO:0099587"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_01090":null,"SJAG_01353":null,"SJAG_01493":null,"SJAG_02877":null,"SJAG_02883":null,"SJAG_02968":null,"SJAG_03631":null,"SJAG_04136":null,"SJAG_04185":null,"SJAG_04246":null,"SJAG_04551":null,"SJAG_04668":null,"SJAG_04731":null,"SJAG_04830":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"inorganic cation import across plasma membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"inorganic cation import into cell","type":"exact"}],"termid":"GO:0098659","terms_by_termid":{"GO:0071578":null,"GO:0098703":null,"GO:0098705":null,"GO:0098711":null,"GO:0098716":null,"GO:0140157":null,"GO:1905665":null,"GO:1905949":null,"GO:1990573":null}}


id: PBO:0038429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha 1,4-galactosyltransferase (P blood group)","termid":"PBO:0038429"}


id: MONDO:1011144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Choanal atresia that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choanal atresia, non-human animal","termid":"MONDO:1010289"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choanal atresia, sheep","secondary_identifiers":["OMIA:001764-9940"],"termid":"MONDO:1011144","xrefs":{"Monarch":{"xref_id":"1011144"}}}


id: PBO:0087545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RNAPII-associated chromatin remodeling Paf1 complex; regulates gene expression by directing cotranscriptional histone modification, influences transcription and chromatin structure through several independent functional domains; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay","termid":"PBO:0087545"}


id: PBO:0002897
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains UAS","termid":"PBO:0002897"}


id: PBO:0062080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 11 pseudogene","termid":"PBO:0062080"}


id: PBO:0051602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 25","termid":"PBO:0051602"}


id: PBO:0012002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family transmembrane transporter Mfs1","termid":"PBO:0012002"}


id: PBO:0053859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1132","termid":"PBO:0053859"}


id: PBO:0000498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CwfJ family protein, splicing factor (predicted)","termid":"PBO:0000498"}


id: PR:Q9USZ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongation factor G, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02754","PANTHER:PTHR23115:SF13","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor G, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1306.01c","secondary_identifiers":["UniProtKB:Q9USZ1"],"synonyms":[{"name":"EF-Gmt (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GFM1","type":"exact"},{"name":"elongation factor G 1, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"elongation factor G1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mEF-G 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USZ1"}


id: PBO:0091919
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe Frataxin Homolog","termid":"PBO:0091919"}


id: GO:1902320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA duplex unwinding that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear DNA replication DNA duplex unwinding (obsolete GO:1902320)","synonyms":[{"name":"DNA duplex unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA duplex unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA duplex unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA duplex unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"DNA unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"duplex DNA melting involved in DNA replication during S phase","type":"related"},{"name":"duplex DNA melting involved in DNA replication involved in S phase","type":"exact"},{"name":"duplex DNA melting involved in DNA replication involved in S-phase","type":"exact"}],"termid":"GO:1902320"}


id: PBO:0044566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAZ associated protein 2 pseudogene 1","termid":"PBO:0044566"}


id: PBO:0086691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation","termid":"PBO:0086691"}


id: MONDO:0001730
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urethral disorder","termid":"MONDO:0004184"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urethral syndrome","secondary_identifiers":["SCTID:31273004","DOID:13498","MEDGEN:510225","ICD9:597.81","UMLS:C0156279"],"termid":"MONDO:0001730","xrefs":{"Monarch":{"xref_id":"0001730"}}}


id: FYPO:0002545
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of serine residues three positions C-terminal to arginine residues (i.e. in Arg-X-X-Ser, or RxxS, sequences) does not occur during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished protein serine phosphorylation at RxxS site during cellular response to hydroxyurea (obsolete FYPO:0002545)","synonyms":[{"name":"abolished protein serine phosphorylation at Arg-X-X-Ser site during cellular response to hydroxyurea","type":"exact"},{"name":"abolished protein serine phosphorylation at PAS site during cellular response to hydroxyurea","type":"exact"},{"name":"abolished protein serine phosphorylation at RxxS site during cellular response to HU","type":"exact"},{"name":"abolished protein serine phosphorylation at RxxS site during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"abolished protein serine phosphorylation at RxxS site during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"abolished protein serine phosphorylation at arginine-X-X-serine site during cellular response to hydroxyurea","type":"exact"},{"name":"abolished protein serine phosphorylation at phospho-Akt site during cellular response to hydroxyurea","type":"exact"},{"name":"protein serine phosphorylation abolished at RxxS site during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0002545"}


id: PBO:0004380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase Ypt7","termid":"PBO:0004380"}


id: PBO:0003899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of mRNA decapping Edc3 (predicted)","termid":"PBO:0003899"}


id: PBO:0058447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5047","termid":"PBO:0058447"}


id: PBO:0070948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a pseudogene 3","termid":"PBO:0070948"}


id: MONDO:1012168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lower motor neuron disease, non-human animal","termid":"MONDO:1011848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lower motor neuron disease, horse","secondary_identifiers":["OMIA:000662-9796"],"termid":"MONDO:1012168","xrefs":{"Monarch":{"xref_id":"1012168"}}}


id: GO:0061317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin and contributing to cardiac muscle cell fate commitment. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.","definition_xrefs":["GOC:mtg_heart","PMID:17576928"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment (obsolete GO:0061317)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment","type":"exact"}],"termid":"GO:0061317"}


id: GO:0090112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which COPII vesicle coat proteins are disassembled, and released.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle uncoating","termid":"GO:0072319"},{"relation_name":"part_of","term_name":"endoplasmic reticulum to Golgi vesicle-mediated transport","termid":"GO:0006888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"COPII vesicle uncoating","termid":"GO:0090112"}


id: PBO:0057086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 182","termid":"PBO:0057086"}


id: MONDO:0003145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A central nervous system embryonal tumor, not otherwise specified arising from the supratentorial region.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supratentorial cancer","termid":"MONDO:0002071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"supratentorial primitive neuroectodermal tumor","secondary_identifiers":["UMLS:C1336538","DOID:4791","NCIT:C6968","SCTID:699318007","ICD9:209.30","MEDGEN:234914"],"synonyms":[{"name":"CNS/supratentorial PNET","type":"exact"},{"name":"supratent. primitive neuro. tumor","type":"exact"},{"name":"supratent. primitive neuro. tumour","type":"exact"},{"name":"supratentorial PNET","type":"exact"},{"name":"supratentorial primitive neuroectodermal tumor","type":"exact"}],"termid":"MONDO:0003145","xrefs":{"Monarch":{"xref_id":"0003145"}}}


id: PBO:0081014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB46 antisense RNA 2","termid":"PBO:0081014"}


id: MONDO:0019999
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete intestinal malformation (obsolete MONDO:0019999)","secondary_identifiers":["Orphanet:97945"],"termid":"MONDO:0019999","xrefs":{"Monarch":{"xref_id":"0019999"}}}


id: GO:0097071
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of two interferon regulatory proteins (IRFs); may be homodimeric or heterodimeric. The activation of a latent closed conformation of IRF in the cytoplasm is triggered by phosphorylation of Ser/Thr residues in a C-terminal region. Phosphorylation stimulates the C-terminal autoinhibitory domain to attain a highly extended conformation triggering dimerization through extensive contacts to a second subunit.","definition_xrefs":["PMID:20043992","GOC:cna"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"interferon regulatory factor complex","synonyms":[{"name":"IRF complex","type":"exact"}],"termid":"GO:0097071"}


id: PBO:0083269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 88% of ORF overlaps the verified gene RPL39; diploid mutant displays a weak budding pattern phenotype in a systematic assay","termid":"PBO:0083269"}


id: PBO:0047098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 151 member A","termid":"PBO:0047098"}


id: GO:0042851
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042852"},{"annotations":[70426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.","definition_xrefs":["GOC:jl","GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine metabolic process","termid":"GO:0006522"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"L-alanine metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-alanine metabolism","type":"exact"}],"termid":"GO:0042851","terms_by_termid":{"GO:0042852":null,"GO:0042853":null}}


id: PBO:0055029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2444","termid":"PBO:0055029"}


id: GO:0099738
data:
  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id: PBO:0036042
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_trimethylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036042"}


id: FYPO:0001744
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of biotin into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal biotin import","synonyms":[{"name":"abnormal biotin import across plasma membrane","type":"exact"},{"name":"abnormal biotin import during mitotic cell cycle","type":"related"},{"name":"abnormal biotin import during vegetative growth","type":"exact"},{"name":"abnormal biotin import into cell","type":"exact"},{"name":"abnormal biotin uptake","type":"exact"}],"termid":"FYPO:0001744"}


id: PBO:0048296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gigaxonin","termid":"PBO:0048296"}


id: GO:0052447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the ethylene-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont ethylene-mediated defense response (obsolete GO:0052447)","synonyms":[{"name":"modulation by organism of symbiont ethylene-mediated defense response","type":"exact"}],"termid":"GO:0052447"}


id: PBO:0109456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 Meu34, human ZNRF3 homolog","termid":"PBO:0109456"}


id: MONDO:0036483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 18 with polydactyly","secondary_identifiers":["UMLS:C4693420","OMIM:617866","MEDGEN:1632904","DOID:0080293"],"synonyms":[{"name":"SRTD18","type":"related"},{"name":"short-rib thoracic dysplasia 18 with polydactyly","type":"exact"}],"termid":"MONDO:0036483","xrefs":{"Monarch":{"xref_id":"0036483"}}}


id: GO:0050285
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-sinapoylcholine + H2O = choline + H+ + sinapate.","definition_xrefs":["RHEA:10016","EC:3.1.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"sinapine esterase activity","secondary_identifiers":["KEGG_REACTION:R02381","MetaCyc:SINAPINE-ESTERASE-RXN"],"synonyms":[{"name":"aromatic choline esterase activity","type":"related"},{"name":"sinapoylcholine sinapohydrolase activity","type":"related"}],"termid":"GO:0050285"}


id: MONDO:0018589
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"amyloidosis","termid":"MONDO:0019065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005066"],"is_obsolete":false,"name":"AApoAIV amyloidosis","secondary_identifiers":["UMLS:C5568805","icd11.foundation:1235542353","MEDGEN:1800228","GARD:21828","DOID:0080927","Orphanet:439232"],"synonyms":[{"name":"apolipoprotein A-IV amyloidosis","type":"exact"}],"termid":"MONDO:0018589","xrefs":{"Monarch":{"xref_id":"0018589"}}}


id: PBO:0005222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex subunit Ccr4 (predicted)","termid":"PBO:0005222"}


id: PBO:0074120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 30 member 5","termid":"PBO:0074120"}


id: MONDO:0100008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eosinophilic gastrointestinal disorder triggered by food that is non-IgE-mediated.","definition_xrefs":["PMID:25746969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enterocolitis","termid":"MONDO:0009172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"food protein-induced enterocolitis syndrome","secondary_identifiers":["icd11.foundation:1729235847","UMLS:C4268599","ICD10CM:K52.21","MEDGEN:1623554"],"synonyms":[{"name":"FPIES","type":"exact"},{"name":"delayed food allergy","type":"exact"}],"termid":"MONDO:0100008","xrefs":{"Monarch":{"xref_id":"0100008"}}}


id: MONDO:0012712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystonia with cerebellar atrophy","secondary_identifiers":["MEDGEN:392987","MESH:C567131","OMIM:611694","UMLS:C2673697"],"synonyms":[{"name":"DYTCA","type":"exact"},{"name":"dystonia with cerebellar atrophy","type":"exact"}],"termid":"MONDO:0012712","xrefs":{"Monarch":{"xref_id":"0012712"}}}


id: GO:0016051
data:
  {"annotated_genes":["SJAG_03705","SJAG_00129","SJAG_02446","SJAG_03587","SJAG_00182","SJAG_04878","SJAG_04659","SJAG_04483","SJAG_01255","SJAG_01427","SJAG_01531","SJAG_02590","SJAG_00424","SJAG_00183","SJAG_04666","SJAG_03057","SJAG_00876","SJAG_00409","SJAG_01012","SJAG_01453","SJAG_04668","SJAG_04462","SJAG_04771","SJAG_04509","SJAG_03123","SJAG_01290","SJAG_02916","SJAG_02222","SJAG_01209","SJAG_00610","SJAG_00218","SJAG_01963","SJAG_01426","SJAG_01787","SJAG_01862","SJAG_01288","SJAG_04236","SJAG_01028","SJAG_05285","SJAG_01835","SJAG_02278","SJAG_01646","SJAG_04073","SJAG_00963","SJAG_04184","SJAG_01376"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78752,64537,77132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006078"},{"annotations":[102641,81401,95342,97264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051072"},{"annotations":[96475],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[74951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[75479,73372,75307,72587,80713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[76469,115220,74954,77812,93610,117880,73015,108132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[104657,80162],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[64101,71040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006114"},{"annotations":[79044,80963],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045719"},{"annotations":[94430,89519],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[89903],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032951"},{"annotations":[94414,119972,92779,107371,69629,107942,120105],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"},{"annotations":[94436,91448,104864,96953],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"},{"annotations":[70191,62802,110941,65811,70989,63543,69612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005992"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate metabolic process","termid":"GO:0005975"},{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_00183":null,"SJAG_00218":null,"SJAG_00409":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_00963":null,"SJAG_01012":null,"SJAG_01028":null,"SJAG_01209":null,"SJAG_01255":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01376":null,"SJAG_01426":null,"SJAG_01427":null,"SJAG_01453":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_01862":null,"SJAG_01963":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02446":null,"SJAG_02590":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03705":null,"SJAG_04073":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_04878":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"carbohydrate biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0006093"],"synonyms":[{"name":"anabolic carbohydrate metabolic process","type":"exact"},{"name":"anabolic carbohydrate metabolism","type":"exact"},{"name":"carbohydrate anabolism","type":"exact"},{"name":"carbohydrate biosynthesis","type":"exact"},{"name":"carbohydrate formation","type":"exact"},{"name":"carbohydrate synthesis","type":"exact"}],"termid":"GO:0016051","terms_by_termid":{"GO:0005992":null,"GO:0006078":null,"GO:0006114":null,"GO:0032951":null,"GO:0034412":null,"GO:0034413":null,"GO:0045719":null,"GO:0051072":null,"GO:0070600":null,"GO:0070610":null,"GO:0070880":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: GO:0006757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group into ADP, adenosine diphosphate, to produce ATP.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP generation from ADP (obsolete GO:0006757)","synonyms":[{"name":"ADP phosphorylation","type":"exact"}],"termid":"GO:0006757"}


id: MONDO:1011886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroaxonal dystrophy with cerebellar abiotrophy, non-human animal","secondary_identifiers":["OMIA:001606"],"termid":"MONDO:1011886","xrefs":{"Monarch":{"xref_id":"1011886"}}}


id: MONDO:0005834
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection with the organism Mycobacterium.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlamydia trachomatis infectious disease","termid":"MONDO:0005701"},{"relation_name":"is_a","term_name":"granuloma inguinale","termid":"MONDO:0005777"},{"relation_name":"is_a","term_name":"lymphatic system disorder","termid":"MONDO:0005833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymphogranuloma venereum","secondary_identifiers":["ICD10CM:A55","MEDGEN:44221","DOID:13819","EFO:0007353","UMLS:C0024286","ICD9:099.1","MESH:D008219","NCIT:C26822","SCTID:186946009"],"synonyms":[{"name":"Durand-Nicolas-Favre disease","type":"exact"},{"name":"LGV","type":"related"},{"name":"Poradenitis inguinale","type":"exact"},{"name":"climatic or tropical bubo","type":"exact"},{"name":"lymph granuloma inguinale","type":"exact"},{"name":"lymphogranuloma inguinale","type":"exact"},{"name":"strumous bubo","type":"exact"}],"termid":"MONDO:0005834","xrefs":{"Monarch":{"xref_id":"0005834"}}}


id: MONDO:0015439
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ring chromosome 4 syndrome is an autosomal anomaly characterized by variable clinical features, most commonly including significant intrauterine and postnatal growth retardation, developmental delay, intellectual disability, microcephaly, and dysmorphic facial features. Some less frequent features are cleft lip and/or cleft palate, congenital cardiovascular, gastrointestinal and genitourinary system anomalies.","definition_xrefs":["Orphanet:1447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 4 disorder","termid":"MONDO:0700011"},{"relation_name":"is_a","term_name":"ring chromosome disorder","termid":"MONDO:0700091"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring chromosome 4","secondary_identifiers":["GARD:1339","MESH:C537636","NCIT:C121983","SCTID:81678004","NORD:1671","MEDGEN:75571","UMLS:C0265407"],"synonyms":[{"name":"R4","type":"related"},{"name":"Ring 4","type":"related"},{"name":"Ring chromosome 4 syndrome","type":"related"},{"name":"Ring chromosome type 4","type":"exact"},{"name":"chromosome 4 ring","type":"related"},{"name":"r(4) syndrome","type":"exact"},{"name":"rose cluster 4","type":"exact"},{"name":"syndrome r(4)","type":"exact"}],"termid":"MONDO:0015439","xrefs":{"Monarch":{"xref_id":"0015439"}}}


id: GO:0003998
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate.","definition_xrefs":["EC:3.6.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"acylphosphatase activity","secondary_identifiers":["MetaCyc:ACYLPHOSPHATASE-RXN","RHEA:14965"],"synonyms":[{"name":"1,3-diphosphoglycerate phosphatase activity","type":"related"},{"name":"GP 1-3","type":"related"},{"name":"Ho 1-3","type":"related"},{"name":"acetic phosphatase activity","type":"related"},{"name":"acetylphosphatase activity","type":"related"},{"name":"acylphosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0003998"}


id: MONDO:0020059
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gonosome number anomaly (obsolete MONDO:0020059)","secondary_identifiers":["Orphanet:98156"],"synonyms":[{"name":"Sex-chromosome number anomaly","type":"exact"}],"termid":"MONDO:0020059","xrefs":{"Monarch":{"xref_id":"0020059"}}}


id: GO:0033763
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-proline + 2-oxoglutarate + O2 = cis-3-hydroxy-L-proline + succinate + CO2.","definition_xrefs":["EC:1.14.11.28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"proline 3-hydroxylase activity","secondary_identifiers":["MetaCyc:1.14.11.28-RXN","RHEA:20265"],"synonyms":[{"name":"L-proline,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity","type":"related"},{"name":"P-3-H","type":"related"}],"termid":"GO:0033763"}


id: FYPO:0000364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the plasma membrane is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal plasma membrane morphology during vegetative growth","synonyms":[{"name":"abnormal plasma membrane morphology during mitotic cell cycle","type":"related"},{"name":"plasma membrane morphology: abnormal","type":"related"}],"termid":"FYPO:0000364"}


id: GO:0002571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of variable numbers of random nucleotides by terminal deoxytransferase in the N regions of T cell receptor genes. N regions are found at the V-D, D-D, V-J, and D-J recombinational junctions, depending on the T cell receptor gene.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of T cell receptor genes","termid":"GO:0002568"},{"relation_name":"is_a","term_name":"somatic diversification of immune receptors by N region addition","termid":"GO:0002569"},{"relation_name":"part_of","term_name":"somatic recombination of T cell receptor gene segments","termid":"GO:0002681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006310","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"somatic diversification of T cell receptor genes by N region addition","synonyms":[{"name":"somatic diversification of TCR genes by N region addition","type":"exact"}],"termid":"GO:0002571"}


id: PBO:0074335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1","termid":"PBO:0074335"}


id: PBO:0082143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Activator of meiotic anaphase promoting complex (APC/C); Cdc20p family member; required for initiation of spore wall assembly; required for Clb1p degradation during meiosis; prevents premature assembly of the meiosis I spindle, required for DSB induced prophase I arrest","termid":"PBO:0082143"}


id: GO:0070880
data:
  {"annotated_genes":["SJAG_04483","SJAG_00876","SJAG_00218","SJAG_01288","SJAG_04666","SJAG_02222","SJAG_03123","SJAG_01453","SJAG_03587","SJAG_05285","SJAG_04771","SJAG_01835","SJAG_01290"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80162,104657],"is_not":false,"summary":null,"term":"GO:0070880"},{"annotations":[96475],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[74951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[74954,77812,115220,76469,117880,93610,108132,73015],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[94430,89519],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall beta-glucan biosynthetic process","termid":"GO:0034410"},{"relation_name":"is_a","term_name":"fungal-type cell wall polysaccharide biosynthetic process","termid":"GO:0051278"},{"relation_name":"is_a","term_name":"fungal-type cell wall beta-glucan metabolic process","termid":"GO:0070879"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00876":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01835":null,"SJAG_02222":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_04483":null,"SJAG_04666":null,"SJAG_04771":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"fungal-type cell wall beta-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall beta-glucan anabolism","type":"exact"},{"name":"fungal-type cell wall beta-glucan biosynthesis","type":"exact"},{"name":"fungal-type cell wall beta-glucan formation","type":"exact"},{"name":"fungal-type cell wall beta-glucan synthesis","type":"exact"}],"termid":"GO:0070880","terms_by_termid":{"GO:0034412":null,"GO:0034413":null,"GO:0070880":null,"GO:0071970":null,"GO:0140748":null}}


id: PBO:0064318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase 7 (inactive)","termid":"PBO:0064318"}


id: GO:0090629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the synthesis of DNA from a template strand in a net 3' to 5' direction is started.","definition_xrefs":["GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"lagging strand elongation","termid":"GO:0006273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"lagging strand initiation","termid":"GO:0090629"}


id: MOD:01712
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with one of the Applied Biosystems iTRAQ8plex reagent reporter+balance groups.","definition_xrefs":["Unimod:214#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent alpha-amino acylated residue","termid":"MOD:01708"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent N-acylated residue","termid":"MOD:01710"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01712"}


id: MONDO:0003713
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"angiokeratoma","termid":"MONDO:0003143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"angiokeratoma circumscriptum","secondary_identifiers":["SCTID:21848000","NCIT:C7751","UMLS:C0263638","icd11.foundation:225334653","DOID:5949","MEDGEN:120485"],"termid":"MONDO:0003713","xrefs":{"Monarch":{"xref_id":"0003713"}}}


id: PBO:0072548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory associated protein of MTOR complex 1","termid":"PBO:0072548"}


id: MOD:00372
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-tyrosine residues with a carbon-carbon bond to form 3'-(3'-L-tyrosinyl)-L-tyrosine.","definition_xrefs":["PubMed:637884","RESID:AA0367","PubMed:8937563","PubMed:8702710","PubMed:14249161","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-(3'-L-tyrosinyl)-L-tyrosine","synonyms":[{"name":"(2S,2'S)-3,3'-(6,6'-dihydroxybiphenyl-3,3'-diyl)bis(2-aminopropanoic acid)","type":"exact"},{"name":"3'-(L-tyros-3'-yl)-L-tyrosine","type":"exact"},{"name":"3,3'-BiTyr (Crosslink)","type":"exact"},{"name":"6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-bis(2-aminopropanoic acid)","type":"exact"},{"name":"alpha,alpha'-diamino-6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-dipropanoic acid","type":"exact"},{"name":"bityrosine","type":"exact"},{"name":"o,o-dityrosine","type":"exact"}],"termid":"MOD:00372"}


id: PBO:0034605
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_G2_DNA_damage_checkpoint_during_cellular_response_to_UV_during_mitotic_S_phase","termid":"PBO:0034605"}


id: MONDO:0010696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"omphalocele","termid":"MONDO:0019015"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"omphalocele, X-linked","secondary_identifiers":["GARD:18587","UMLS:C3275625","OMIM:310980","MEDGEN:477256"],"synonyms":[{"name":"omphalocele, X-linked","type":"exact"}],"termid":"MONDO:0010696","xrefs":{"Monarch":{"xref_id":"0010696"}}}


id: PBO:0083500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YOR083W","termid":"PBO:0083500"}


id: GO:0048283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of determinate inflorescences are generated and organized. A determinate inflorescence is one that can produce an undefined number of floral meristems.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflorescence morphogenesis","termid":"GO:0048281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"indeterminate inflorescence morphogenesis","termid":"GO:0048283"}


id: MONDO:1010300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteopetrosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia, non-human animal","termid":"MONDO:1012973"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteopetrosis, non-human animal","secondary_identifiers":["OMIA:000755"],"termid":"MONDO:1010300","xrefs":{"Monarch":{"xref_id":"1010300"}}}


id: PR:Q9Y7L2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC2A9.10 gene.","definition_xrefs":["UniProtKB:Q9Y7L2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA methyltransferase C2A9.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2A9.10","synonyms":[{"name":"Spom972h-SPBC2A9.10","type":"exact"}],"termid":"PR:Q9Y7L2"}


id: PBO:0063464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet derived growth factor receptor beta","termid":"PBO:0063464"}


id: PBO:0055153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2572","termid":"PBO:0055153"}


id: GO:1990946
data:
  {"annotated_genes":["SJAG_01515"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100703],"is_not":false,"summary":null,"term":"GO:1990946"}]},"cv_name":"biological_process","definition":"The cell cycle process in which a cell progresses from meiosis I to meiosis II.","definition_xrefs":["PMID:21389117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle phase transition","termid":"GO:0044771"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01515":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"meiosis I/meiosis II transition","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990946","terms_by_termid":{"GO:1990946":null}}


id: MONDO:0010664
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Snyder-Robinson syndrome (SRS) is an X-linked intellectual disability syndrome, including also hypotonia, an unsteady gait, osteoporosis, kyphoscoliosis and facial asymmetry. Severe generalized psychomotor evolving to moderate to profound global intellectual disability is also observed.","definition_xrefs":["Orphanet:3063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"disorder of polyamine metabolism","termid":"MONDO:0800159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"syndromic X-linked intellectual disability Snyder type","secondary_identifiers":["GARD:5615","ICD9:758.89","DOID:0060802","SCTID:702416008","UMLS:C0796160","MEDGEN:162918","NORD:1890","MESH:C536678","OMIM:309583"],"synonyms":[{"name":"MRXSSR","type":"related"},{"name":"SRS","type":"exact"},{"name":"Snyder-Robinson Syndrome","type":"exact"},{"name":"Snyder-Robinson intellectual disability syndrome","type":"exact"},{"name":"Snyder-Robinson mental retardation syndrome","type":"exact"},{"name":"Snyder-Robinson syndrome","type":"exact"},{"name":"X-linked intellectual disability Snyder-Robinson type","type":"related"},{"name":"X-linked intellectual disability, Snyder type","type":"related"},{"name":"X-linked mental retardation Snyder-Robinson type","type":"related"},{"name":"intellectual developmental disorder, X-linked syndromic, Snyder-Robinson type, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked, Snyder-Robinson type","type":"exact"},{"name":"intellectual disability, X-linked, syndromic, Snyder-Robinson type","type":"related"},{"name":"mental retardation, X-linked, Snyder-Robinson type","type":"exact"},{"name":"mental retardation, X-linked, syndromic, Snyder-Robinson type","type":"related"},{"name":"spermine synthase deficiency","type":"exact"},{"name":"syndromic X-linked intellectual disability Snyder type","type":"exact"}],"termid":"MONDO:0010664","xrefs":{"Monarch":{"xref_id":"0010664"}}}


id: GO:0009974
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: zeinoxanthin + NADPH + O2 + H+ = lutein + NADP+ + H2O. Adds a hydroxyl group to the epsilon ring of the alpha-carotene.","definition_xrefs":["PMID:8837513"],"gene_count":0,"genotype_count":0,"name":"obsolete zeinoxanthin epsilon hydroxylase activity (obsolete GO:0009974)","termid":"GO:0009974"}


id: GO:0044831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host cytokine production (obsolete GO:0044831)","termid":"GO:0044831"}


id: PBO:0065272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR34 long non-coding RNA","termid":"PBO:0065272"}


id: GO:1900679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ferricrocin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ferricrocin biosynthetic process","termid":"GO:1900678"},{"relation_name":"is_a","term_name":"negative regulation of ferrichrome biosynthetic process","termid":"GO:1905569"},{"relation_name":"negatively_regulates","term_name":"ferricrocin biosynthetic process","termid":"GO:0031171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ferricrocin biosynthetic process","synonyms":[{"name":"down regulation of ferricrocin anabolism","type":"exact"},{"name":"down regulation of ferricrocin biosynthesis","type":"exact"},{"name":"down regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"down regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"down regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"down regulation of ferricrocin formation","type":"exact"},{"name":"down regulation of ferricrocin synthesis","type":"exact"},{"name":"down-regulation of ferricrocin anabolism","type":"exact"},{"name":"down-regulation of ferricrocin biosynthesis","type":"exact"},{"name":"down-regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"down-regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"down-regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"down-regulation of ferricrocin formation","type":"exact"},{"name":"down-regulation of ferricrocin synthesis","type":"exact"},{"name":"downregulation of ferricrocin anabolism","type":"exact"},{"name":"downregulation of ferricrocin biosynthesis","type":"exact"},{"name":"downregulation of ferricrocin biosynthetic process","type":"exact"},{"name":"downregulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"downregulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"downregulation of ferricrocin formation","type":"exact"},{"name":"downregulation of ferricrocin synthesis","type":"exact"},{"name":"inhibition of ferricrocin anabolism","type":"exact"},{"name":"inhibition of ferricrocin biosynthesis","type":"exact"},{"name":"inhibition of ferricrocin biosynthetic process","type":"narrow"},{"name":"inhibition of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"inhibition of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"inhibition of ferricrocin formation","type":"exact"},{"name":"inhibition of ferricrocin synthesis","type":"exact"},{"name":"negative regulation of ferricrocin anabolism","type":"exact"},{"name":"negative regulation of ferricrocin biosynthesis","type":"exact"},{"name":"negative regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"negative regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"negative regulation of ferricrocin formation","type":"exact"},{"name":"negative regulation of ferricrocin synthesis","type":"exact"}],"termid":"GO:1900679"}


id: PBO:0046001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF1AX pseudogene 1","termid":"PBO:0046001"}


id: MONDO:0006510
data:
  {"annotated_genes":["SJAG_04335","SJAG_00516","SJAG_03375","SJAG_01183"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011422"},{"annotations":[89049],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010359"},{"annotations":[88662],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013782"},{"annotations":[88119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011268"}]},"cv_name":"mondo","definition":"Genetic defects in the selective or non-selective transport functions of the kidney tubules.","definition_xrefs":["MESH:D015499"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00516":null,"SJAG_01183":null,"SJAG_03375":null,"SJAG_04335":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"renal tubular transport disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:1000647","MEDGEN:19728","DOID:447","UMLS:C0035091"],"synonyms":[{"name":"disorder of renal absorption","type":"exact"},{"name":"inborn renal tubular transport disorder","type":"exact"},{"name":"kidney tubular transport, inborn error","type":"related"},{"name":"kidney tubular transport, inborn errors","type":"related"},{"name":"renal absorption disease","type":"exact"},{"name":"renal tubular transport errors","type":"related"},{"name":"renal tubular transport, inborn error","type":"related"}],"termid":"MONDO:0006510","terms_by_termid":{"MONDO:0010359":null,"MONDO:0011268":null,"MONDO:0011422":null,"MONDO:0013782":null},"xrefs":{"Monarch":{"xref_id":"0006510"}}}


id: PBO:0113581
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in fungi eukaryotes","termid":"PBO:0113581"}


id: GO:0043217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of preserving the structure and function of mature myelin. This includes maintaining the compact structure of myelin necessary for its electrical insulating characteristics as well as the structure of non-compact regions such as Schmidt-Lantermann clefts and paranodal loops. This does not include processes responsible for maintaining the nodes of Ranvier, which are not part of the myelin sheath.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"part_of","term_name":"myelination","termid":"GO:0042552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"myelin maintenance","synonyms":[{"name":"myelin sheath maintenance","type":"exact"}],"termid":"GO:0043217"}


id: GO:0051963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.","definition_xrefs":["GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"regulates","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of synapse assembly","synonyms":[{"name":"regulation of synapse biogenesis","type":"exact"},{"name":"regulation of synaptogenesis","type":"exact"}],"termid":"GO:0051963"}


id: GO:0120529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-secoisolariciresinol + 2 NAD+ = (-)-matairesinol + 2 H(+) + 2 NADH.","definition_xrefs":["RHEA:33887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"secoisolariciresinol dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-13433","EC:1.1.1.331","KEGG_REACTION:R10129"],"termid":"GO:0120529"}


id: GO:0010045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel cation stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to nickel cation","synonyms":[{"name":"response to nickel","type":"exact"}],"termid":"GO:0010045"}


id: MONDO:1010062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital adrenal hyperplasia due to 11-beta hydroxylase deficiency that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital adrenal hyperplasia, non-human animal","termid":"MONDO:1010050"},{"relation_name":"is_a","term_name":"reproductive system disorder, non-human animal","termid":"MONDO:1011354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital adrenal hyperplasia due to 11-beta hydroxylase deficiency, non-human animal","secondary_identifiers":["OMIA:001661"],"termid":"MONDO:1010062","xrefs":{"Monarch":{"xref_id":"1010062"}}}


id: GO:2000271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of fibroblast apoptotic process.","definition_xrefs":["GOC:yaf","GOC:obol","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic process","termid":"GO:0043065"},{"relation_name":"is_a","term_name":"regulation of fibroblast apoptotic process","termid":"GO:2000269"},{"relation_name":"positively_regulates","term_name":"fibroblast apoptotic process","termid":"GO:0044346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fibroblast apoptotic process","synonyms":[{"name":"positive regulation of fibroblast apoptosis","type":"narrow"}],"termid":"GO:2000271"}


id: PBO:0060709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6","termid":"PBO:0060709"}


id: PBO:0053030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal protein transmembrane 4 beta pseudogene 1","termid":"PBO:0053030"}


id: MONDO:0003521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete VIPoma (obsolete MONDO:0003521)","termid":"MONDO:0003521","xrefs":{"Monarch":{"xref_id":"0003521"}}}


id: MONDO:1011509
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gaucher disease that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Gaucher disease, non-human animal","termid":"MONDO:1011431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gaucher disease, sheep","secondary_identifiers":["OMIA:000405-9940"],"termid":"MONDO:1011509","xrefs":{"Monarch":{"xref_id":"1011509"}}}


id: PBO:0060788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit C2","termid":"PBO:0060788"}


id: SO:0001380
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_isopentenylaminomethyl_uridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_isopentenylaminomethyl_uridine","secondary_identifiers":["RNAMOD:103"],"synonyms":[{"name":"5-(isopentenylaminomethyl)uridine","type":"exact"},{"name":"five isopentenylaminomethyl uridine","type":"exact"},{"name":"inm5U","type":"exact"}],"termid":"SO:0001380"}


id: PBO:0084058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein (GAP) for Rho1p; regulator of a Tor2p-mediated, Rho1p GTPase switch that controls organization of the actin cytoskeleton; negative regulator of the RHO1-PKC1-MAPK cell integrity (CWI) and membrane fluidity homeostasis signaling pathways; potential Cdc28p substrate; SAC7 has a paralog, BAG7, that arose from the whole genome duplication","termid":"PBO:0084058"}


id: PR:Q09827
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein transport protein Sec61 subunit gamma that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein Sec61 subunit gamma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G8.02c","secondary_identifiers":["UniProtKB:Q09827"],"synonyms":[{"name":"Spom972h-SEC61G","type":"exact"}],"termid":"PR:Q09827"}


id: PBO:0056219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member C2","termid":"PBO:0056219"}


id: GO:2000909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sterol import.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sterol transport","termid":"GO:0032371"},{"relation_name":"regulates","term_name":"sterol import","termid":"GO:0035376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of sterol import","synonyms":[{"name":"regulation of sterol influx","type":"exact"},{"name":"regulation of sterol uptake","type":"exact"}],"termid":"GO:2000909"}


id: GO:2000964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellooligosaccharide catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of cellooligosaccharide catabolic process","termid":"GO:2000963"},{"relation_name":"negatively_regulates","term_name":"cellooligosaccharide catabolic process","termid":"GO:2000903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of cellooligosaccharide catabolic process","synonyms":[{"name":"negative regulation of cellooligosaccharide catabolism","type":"exact"}],"termid":"GO:2000964"}


id: GO:0008750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+(in) + NAD+ + NADPH = H+(out) + NADH + NADP+.","definition_xrefs":["RHEA:47992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"proton-translocating NAD(P)+ transhydrogenase activity","secondary_identifiers":["EC:7.1.1.1"],"synonyms":[{"name":"NAD(P)+ transhydrogenase (AB-specific) activity","type":"related"}],"termid":"GO:0008750"}


id: PBO:0074730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 88","termid":"PBO:0074730"}


id: PR:O74907
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A BRCA2 and CDKN1A-interacting protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04180","PANTHER:PTHR13261:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein bcp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC613.08","secondary_identifiers":["UniProtKB:O74907"],"synonyms":[{"name":"Spom972h-BCCIP","type":"exact"}],"termid":"PR:O74907"}


id: GO:0106150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of zearalenone, a mycotoxin produced by several Fusarium species, is most commonly found as a contaminant in stored grain and has chronic estrogenic effects on mammals.","definition_xrefs":["PMID:20578001","GOC:ach","PMID:16517624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macrolide biosynthetic process","termid":"GO:0033068"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"zearalenone biosynthetic process","termid":"GO:0106150"}


id: GO:1904307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desipramine stimulus.","definition_xrefs":["PMID:20549303","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to desipramine","termid":"GO:1904307"}


id: GO:0075037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of symbiont appressorium maturation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of appressorium maturation (obsolete GO:0075037)","synonyms":[{"name":"positive regulation maturation of appressorium on or near host","type":"exact"},{"name":"positive regulation of appressorium maturation on or near host","type":"related"}],"termid":"GO:0075037"}


id: MOD:00715
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to a methylated isoleucine residue, such as N-methyl-L-isoleucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-isoleucine residue","termid":"MOD:00910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated isoleucine","synonyms":[{"name":"MeIle","type":"exact"}],"termid":"MOD:00715"}


id: FYPO:0001305
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of any long-chain fatty acid-CoA ligase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0005447","FYPO:0001985","FYPO:0000707","FYPO:0000002","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abnormal long-chain fatty acid-CoA ligase activity","synonyms":[{"name":"abnormal lcfa-ligase activity","type":"exact"}],"termid":"FYPO:0001305"}


id: GO:2000337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endothelial microparticle formation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of blood microparticle formation","termid":"GO:2000334"},{"relation_name":"is_a","term_name":"regulation of endothelial microparticle formation","termid":"GO:2000335"},{"relation_name":"positively_regulates","term_name":"endothelial microparticle formation","termid":"GO:0072565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endothelial microparticle formation","synonyms":[{"name":"positive regulation of endothelial microparticle generation","type":"exact"},{"name":"positive regulation of endothelial microparticle release","type":"exact"}],"termid":"GO:2000337"}


id: PBO:0004420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid permease, predicted Meu22","termid":"PBO:0004420"}


id: MONDO:0019873
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"4p16.3 microduplication syndrome is a rare genetic syndrome that results from the partial duplication of the short arm of chromosome 4. It has a highly variable phenotype, principally characterized by psychomotor and language delay, seizures and dysmorphic features such as high forehead with frontal bossing, hypertelorism, prominent glabella, long narrow palpebral fissures, low set ears and short neck. Eye abnormalities (glaucoma, irregular iris pigmentation, hyperopia) have also been reported.","definition_xrefs":["Orphanet:96072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 4","termid":"MONDO:0016941"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4p16.3 microduplication syndrome","secondary_identifiers":["SCTID:726706008","MEDGEN:1387521","UMLS:C4512053","GARD:19306"],"synonyms":[{"name":"distal duplication 4p","type":"exact"},{"name":"distal trisomy 4p","type":"exact"},{"name":"telomeric duplication 4p","type":"exact"},{"name":"trisomy 4pter","type":"exact"}],"termid":"MONDO:0019873","xrefs":{"Monarch":{"xref_id":"0019873"}}}


id: MONDO:0006815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the jejunum.","direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine cancer","termid":"MONDO:0000956"},{"relation_name":"is_a","term_name":"jejunal neoplasm","termid":"MONDO:0002564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"jejunal cancer","secondary_identifiers":["ICD9:152.1","MEDGEN:56302","DOID:13499","EFO:1000998","UMLS:C0153427","MedDRA:10023166","SCTID:363404008","NCIT:C170919","ICD10CM:C17.1"],"synonyms":[{"name":"cancer of jejunum","type":"exact"},{"name":"jejunum cancer","type":"exact"},{"name":"malignant jejunum neoplasm","type":"exact"},{"name":"malignant neoplasm of jejunum","type":"exact"},{"name":"malignant tumor of jejunum","type":"exact"},{"name":"malignant tumour of jejunum","type":"exact"}],"termid":"MONDO:0006815","xrefs":{"Monarch":{"xref_id":"0006815"}}}


id: MONDO:0010510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-syndromic X-linked intellectual disability in which the cause of the disease is a mutation in the USP27X gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 105","secondary_identifiers":["OMIM:300984","DOID:0112036","UMLS:C4310816","GARD:22697","MEDGEN:934783"],"synonyms":[{"name":"MRX105","type":"exact"},{"name":"USP27X non-syndromic X-linked intellectual disability","type":"exact"},{"name":"intellectual developmental disorder, X-linked 105, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked 105","type":"exact"},{"name":"intellectual disability, X-linked type 105","type":"exact"},{"name":"mental retardation, X-linked 105","type":"exact"},{"name":"mental retardation, X-linked type 105","type":"exact"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in USP27X","type":"exact"}],"termid":"MONDO:0010510","xrefs":{"Monarch":{"xref_id":"0010510"}}}


id: PBO:0046632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 13","termid":"PBO:0046632"}


id: MONDO:0043576
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the arterial intima.","definition_xrefs":["NCIT:C34581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arteritis","termid":"MONDO:0043494"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endarteritis","secondary_identifiers":["SCTID:33806008","MESH:D004692","MEDGEN:41777","UMLS:C0014100"],"synonyms":[{"name":"Endarteritides","type":"related"},{"name":"endarteritis","type":"exact"},{"name":"inflammation of tunica intima of artery","type":"exact"},{"name":"tunica intima of artery inflammation","type":"exact"}],"termid":"MONDO:0043576","xrefs":{"Monarch":{"xref_id":"0043576"}}}


id: GO:0008164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete organophosphorus resistance (obsolete GO:0008164)","synonyms":[{"name":"organophosphorus resistance","type":"exact"}],"termid":"GO:0008164"}


id: GO:0043998
data:
  {"annotated_genes":["SJAG_03537"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75982],"is_not":false,"summary":null,"term":"GO:0043998"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H2A L-lysine = CoA + histone H2A N6-acetyl-L-lysine.","definition_xrefs":["PMID:19056256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone acetyltransferase activity","termid":"GO:0004402"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0034212"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0034212","GO:0016746","GO:0140096"],"is_obsolete":false,"name":"histone H2A acetyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"H2A histone acetylase activity","type":"exact"},{"name":"H2A histone acetyltransferase activity","type":"exact"},{"name":"H2A histone lysine N-acetyltransferase activity","type":"exact"}],"termid":"GO:0043998","terms_by_termid":{"GO:0043998":null}}


id: PBO:0061885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer mitochondrial membrane lipid metabolism regulator OPA3","termid":"PBO:0061885"}


id: PBO:0067605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 771, pseudogene","termid":"PBO:0067605"}


id: PBO:0073149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC24 homolog B, COPII coat complex component","termid":"PBO:0073149"}


id: GO:0045190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic recombination of immunoglobulin genes involved in immune response","termid":"GO:0002204"},{"relation_name":"is_a","term_name":"B cell activation involved in immune response","termid":"GO:0002312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006310","GO:0010467","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"isotype switching","secondary_identifiers":["Wikipedia:Immunoglobulin_class_switching"],"synonyms":[{"name":"class switch recombination","type":"exact"},{"name":"class switching","type":"exact"},{"name":"isotype switch recombination","type":"exact"}],"termid":"GO:0045190"}


id: GO:0016320
data:
  {"annotated_genes":["SJAG_02595"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80329],"is_not":false,"summary":null,"term":"GO:0016320"}]},"cv_name":"biological_process","definition":"The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum.","definition_xrefs":["GOC:elh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"},{"relation_name":"is_a","term_name":"endoplasmic reticulum membrane organization","termid":"GO:0090158"},{"relation_name":"is_a","term_name":"organelle membrane fusion","termid":"GO:0090174"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02595":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum membrane fusion","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"ER membrane fusion","type":"exact"}],"termid":"GO:0016320","terms_by_termid":{"GO:0016320":null}}


id: SO:0001286
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5-formylcytidine is a modified cytidine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytidine","termid":"SO:0001275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_formylcytidine","secondary_identifiers":["RNAMOD:025"],"synonyms":[{"name":"5-formylcytidine","type":"exact"},{"name":"f5C","type":"exact"},{"name":"five formylcytidine","type":"exact"}],"termid":"SO:0001286"}


id: PBO:0065866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB23, member RAS oncogene family","termid":"PBO:0065866"}


id: FYPO:0004118
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that has one or more septa with normal size, shape, or structure, and that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PMID:15116432","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal septum morphology","termid":"FYPO:0006213"},{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"},{"relation_name":"is_a","term_name":"normal septum morphology","termid":"FYPO:0006213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, normal septum morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, normal septum morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, normal septum morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, normal septum morphology","type":"exact"}],"termid":"FYPO:0004118"}


id: GO:0008889
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.","definition_xrefs":["EC:3.1.4.46"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"glycerophosphodiester phosphodiesterase activity","secondary_identifiers":["MetaCyc:GLYCPDIESTER-RXN","RHEA:12969","Reactome:R-HSA-1483107","Reactome:R-HSA-1483116"],"synonyms":[{"name":"IgD-binding protein D","type":"related"},{"name":"gene hpd protein","type":"related"},{"name":"glycerophosphodiester glycerophosphohydrolase activity","type":"related"},{"name":"glycerophosphoryl diester phosphodiesterase activity","type":"related"}],"termid":"GO:0008889"}


id: PBO:0081877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 821","termid":"PBO:0081877"}


id: PBO:0027042
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_allyl_alcohol","termid":"PBO:0027042"}


id: MONDO:0000633
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"}]},"cv_name":"mondo","definition":"A benign neoplasm that involves the sense organ.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system benign neoplasm","termid":"MONDO:0000648"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"is_obsolete":false,"name":"sensory organ benign neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060096"],"synonyms":[{"name":"sense organ benign neoplasm","type":"exact"}],"termid":"MONDO:0000633","terms_by_termid":{"MONDO:0008097":null},"xrefs":{"Monarch":{"xref_id":"0000633"}}}


id: MONDO:0020046
data:
  {"annotated_genes":["SJAG_01286","SJAG_03862"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011402"},{"annotations":[87522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100340"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01286":null,"SJAG_03862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"autosomal recessive degenerative and progressive cerebellar ataxia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5681515","GARD:19415","MEDGEN:1842627","Orphanet:98098"],"termid":"MONDO:0020046","terms_by_termid":{"MONDO:0011402":null,"MONDO:0100340":null},"xrefs":{"Monarch":{"xref_id":"0020046"}}}


id: GO:1901568
data:
  {"annotated_genes":["SJAG_03909","SJAG_04007","SJAG_03471"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[80814,79224],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving fatty acid derivative.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid metabolic process","termid":"GO:0006629"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03471":null,"SJAG_03909":null,"SJAG_04007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"fatty acid derivative metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"fatty acid derivative metabolism","type":"exact"}],"termid":"GO:1901568","terms_by_termid":{"GO:0035336":null,"GO:0035338":null}}


id: GO:0031443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within fast-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fast-twitch skeletal muscle is characterized by fast time parameters, high force development and fatiguability.","definition_xrefs":["GOC:mtg_muscle","GOC:ef","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"twitch skeletal muscle contraction","termid":"GO:0014721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fast-twitch skeletal muscle fiber contraction","synonyms":[{"name":"fast-twitch skeletal fiber contraction","type":"exact"},{"name":"fast-twitch skeletal fibre contraction","type":"exact"},{"name":"fast-twitch skeletal muscle fibre contraction","type":"exact"},{"name":"fast-twitch skeletal myofiber contraction","type":"exact"},{"name":"fast-twitch skeletal myofibre contraction","type":"exact"}],"termid":"GO:0031443"}


id: FYPO:0000862
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere during vegetative growth","termid":"FYPO:0008070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at centromere during vegetative growth","synonyms":[{"name":"normal centromeric histone H3-K9 dimethylation","type":"exact"},{"name":"normal histone H3-K9 dimethylation at centromere during mitotic cell cycle","type":"related"},{"name":"normal histone H3K9me2 at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0000862"}


id: PBO:0053480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 454","termid":"PBO:0053480"}


id: PBO:0090495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DNA branch migration helicase Irc3","termid":"PBO:0090495"}


id: GO:0035279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An RNA interference pathway in which microRNAs (miRNAs) direct the cleavage of target mRNAs. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA base pairing with near-perfect complementarity to the target mRNA will typically direct targeted endonucleolytic cleavage of the mRNA. Many plant miRNAs downregulate gene expression through this mechanism.","definition_xrefs":["GOC:dph","PMID:15196554","PMID:23209154","GOC:mtg_lung","PMID:14744438","PMID:21118121"],"direct_ancestors":[{"relation_name":"is_a","term_name":"miRNA-mediated post-transcriptional gene silencing","termid":"GO:0035195"},{"relation_name":"is_a","term_name":"mRNA destabilization","termid":"GO:0061157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"miRNA-mediated gene silencing by mRNA destabilization","synonyms":[{"name":"deadenylation involved in gene silencing by miRNA","type":"related"},{"name":"gene silencing by mRNA cleavage","type":"broad"},{"name":"gene silencing by miRNA, mRNA cleavage","type":"exact"},{"name":"mRNA cleavage involved in gene silencing by miRNA","type":"exact"},{"name":"mRNA cleavage involved in gene silencing by microRNA","type":"exact"},{"name":"mRNA deadenylation-mediated gene silencing by miRNA","type":"related"},{"name":"mRNA destabilization-mediated gene silencing by miRNA","type":"exact"},{"name":"miRNA-mediated gene silencing by mRNA deadenylation","type":"related"},{"name":"miRNA-mediated gene silencing, mRNA cleavage","type":"exact"}],"termid":"GO:0035279"}


id: GO:0002473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a non-professional antigen presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. Non-professional antigen presenting cells include all cell types but dendritic cells, B cells, T cells, monocytes, macrophages, and neutrophils.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"non-professional antigen presenting cell antigen processing and presentation","termid":"GO:0002473"}


id: PBO:0002921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Hsp9","termid":"PBO:0002921"}


id: PBO:0086144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for normal metabolism of the rRNA primary transcript; nucleolar protein; proposed to be involved in ribosome biogenesis","termid":"PBO:0086144"}


id: PBO:0047100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 151 member B","termid":"PBO:0047100"}


id: MONDO:0014593
data:
  {"annotated_genes":["SJAG_01797"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87235],"is_not":false,"summary":null,"term":"MONDO:0014593"}]},"cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the AARS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"},{"relation_name":"is_a","term_name":"AARS1-related leukoencephalopathy","termid":"MONDO:1010132"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005027","MONDO:0005066","MONDO:0700092","MONDO:0004736"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 29","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080451","MEDGEN:908570","OMIM:616339","GARD:16092","UMLS:C4225361"],"synonyms":[{"name":"AARS early infantile epileptic encephalopathy","type":"exact"},{"name":"DEE29","type":"exact"},{"name":"EIEE29","type":"exact"},{"name":"developmental and epileptic encephalopathy 29","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in AARS","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 29","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 29","type":"exact"}],"termid":"MONDO:0014593","terms_by_termid":{"MONDO:0014593":null},"xrefs":{"Monarch":{"xref_id":"0014593"}}}


id: PBO:0042973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 1","termid":"PBO:0042973"}


id: PBO:0014291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, predicted GPI anchor","termid":"PBO:0014291"}


id: MONDO:0009258
data:
  {"annotated_genes":["SJAG_02954"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87938],"is_not":false,"summary":null,"term":"MONDO:0009258"}]},"cv_name":"mondo","definition":"Classic galactosemia is a life-threatening metabolic disease with onset in the neonatal period. Infants usually develop feeding difficulties, lethargy, and severe liver disease.","definition_xrefs":["Orphanet:79239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosemia","termid":"MONDO:0018116"},{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"},{"relation_name":"is_a","term_name":"disorder of galactose and fructose metabolism","termid":"MONDO:0800152"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005047"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005047","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"classic galactosemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:13639","icd11.foundation:2011000259","OMIM:230400","MEDGEN:82777","UMLS:C0268151","SCTID:10899004","DOID:0111459","NANDO:2200532","NANDO:1200851"],"synonyms":[{"name":"GALT deficiency","type":"exact"},{"name":"Galt deficiency","type":"related"},{"name":"classic galactosemia","type":"exact"},{"name":"classical galactosemia, homozygous duarte-type","type":"narrow"},{"name":"galactose-1-phosphate uridyltransferase deficiency","type":"exact"},{"name":"galactose-1-phosphate uridylyltransferase deficiency","type":"related"},{"name":"galactosemia","type":"related"},{"name":"galactosemia type 1","type":"exact"},{"name":"galactosemia, Duarte variant","type":"related"},{"name":"galactosemia, classic","type":"related"},{"name":"transferase deficiency","type":"related"}],"termid":"MONDO:0009258","terms_by_termid":{"MONDO:0009258":null},"xrefs":{"Monarch":{"xref_id":"0009258"}}}


id: GO:0020016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Invagination of the plasma membrane from which a cilium (also called flagellum) protrudes.","definition_xrefs":["GOC:mb","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary pocket","synonyms":[{"name":"cilial pocket","type":"exact"},{"name":"cilium pocket","type":"exact"},{"name":"flagellar pocket","type":"exact"}],"termid":"GO:0020016"}


id: PBO:0092002
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this gene is located in the silent mating type region mat2 and is therefore not expressed. It is only transcribed when at the mat1 locus, which is the mating type configuration of h+ cells. The S. pombe reference strain is h- mating type and express h- specific mating genes from the mat1 locus. The silenced mat2 genes are therefore annotated with mat1 h+ specific information","termid":"PBO:0092002"}


id: MONDO:0000175
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ataxia-telangiectasia-like disorder (obsolete MONDO:0000175)","termid":"MONDO:0000175","xrefs":{"Monarch":{"xref_id":"0000175"}}}


id: MONDO:0100171
data:
  {"annotated_genes":["SJAG_00379"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014494"}]},"cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing psoriasis.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00379":null},"genotype_count":0,"is_obsolete":false,"name":"psoriasis, susceptibility to","references_by_uniquename":{"PB_REF:0000006":null},"termid":"MONDO:0100171","terms_by_termid":{"MONDO:0014494":null},"xrefs":{"Monarch":{"xref_id":"0100171"}}}


id: PBO:0054278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1668","termid":"PBO:0054278"}


id: PBO:0065934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1 pseudogene 8","termid":"PBO:0065934"}


id: GO:0044860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a plasma membrane raft.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to membrane raft","termid":"GO:1903044"},{"relation_name":"is_a","term_name":"protein localization to cell periphery","termid":"GO:1990778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to plasma membrane raft","termid":"GO:0044860"}


id: PBO:0069182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 436, pseudogene","termid":"PBO:0069182"}


id: GO:0048597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the eye are generated and organized during post-embryonic development.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic eye morphogenesis","termid":"GO:0048050"},{"relation_name":"part_of","term_name":"post-embryonic camera-type eye development","termid":"GO:0031077"},{"relation_name":"part_of","term_name":"camera-type eye morphogenesis","termid":"GO:0048593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic camera-type eye morphogenesis","synonyms":[{"name":"post-embryonic camera-style eye morphogenesis","type":"exact"},{"name":"post-embryonic eye morphogenesis","type":"broad"}],"termid":"GO:0048597"}


id: GO:0039670
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A turret-like appendage formed at the vertices of an icosahedral capsid.","definition_xrefs":["PMID:20592081","GOC:jh2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral capsid, decoration","termid":"GO:0098021"},{"relation_name":"part_of","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral capsid, turret","termid":"GO:0039670"}


id: PBO:0058070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4289","termid":"PBO:0058070"}


id: PBO:0078150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 28 (pseudogene)","termid":"PBO:0078150"}


id: PBO:0066520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repulsive guidance molecule BMP co-receptor a","termid":"PBO:0066520"}


id: MONDO:0001547
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tympanic membrane disorder","termid":"MONDO:0003648"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrophic nonflaccid tympanic membrane","secondary_identifiers":["ICD9:384.82","UMLS:C0155471","DOID:12546","SCTID:72052003","ICD10CM:H73.82","MEDGEN:509983"],"termid":"MONDO:0001547","xrefs":{"Monarch":{"xref_id":"0001547"}}}


id: GO:0080081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of glucosidic link in 4-methylumbelliferyl-beta-D-glucopyranoside.","definition_xrefs":["PMID:15604686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity","termid":"GO:0080081"}


id: GO:0070703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer of two mucus layers secreted by epithelial cells in the colon; the outer mucus layer is loosely packed and can be colonized by bacteria.","definition_xrefs":["PMID:18806221","GOC:mah","PMID:19432394","GOC:mm2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucus layer","termid":"GO:0070701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"outer mucus layer","termid":"GO:0070703"}


id: PBO:0087581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition","termid":"PBO:0087581"}


id: FYPO:0007874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which exocytosis occurs to a lower extent than normal at the shmoo tip.","definition_xrefs":["PomBase:mah","PMID:34382996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal exocytosis","termid":"FYPO:0007873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased exocytosis at shmoo tip","synonyms":[{"name":"decreased exocytosis at mating projection tip","type":"exact"},{"name":"decreased exocytosis at shmoo projection","type":"exact"},{"name":"reduced exocytosis at shmoo tip","type":"exact"}],"termid":"FYPO:0007874"}


id: PBO:0031837
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitochondrial_morphology","termid":"PBO:0031837"}


id: GO:0016082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that converts synaptic vesicles to a state of competence for calcium triggered fusion with the active zone membrane by bringing the two membranes into very close proximity. Priming typically (but not always) occurs after docking (Jahn and Fasshauer, 2012). Primed vesicles are also capable of spontaneously fusing with the active zone membrane.","definition_xrefs":["PMID:15217342","GOC:mah","PMID:23060190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006810","GO:0023052","GO:0016192","GO:0065003"],"is_obsolete":false,"name":"synaptic vesicle priming","termid":"GO:0016082"}


id: GO:0003796
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.","definition_xrefs":["PMID:22748813","EC:3.2.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"},{"relation_name":"is_a","term_name":"peptidoglycan muralytic activity","termid":"GO:0061783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"lysozyme activity","secondary_identifiers":["MetaCyc:3.2.1.17-RXN","Reactome:R-HSA-8862320"],"synonyms":[{"name":"1,4-N-acetylmuramidase activity","type":"exact"},{"name":"L-7001","type":"related"},{"name":"N,O-diacetylmuramidase activity","type":"exact"},{"name":"PR1-lysozyme","type":"related"},{"name":"globulin G","type":"related"},{"name":"globulin G1","type":"related"},{"name":"lysozyme g","type":"related"},{"name":"mucopeptide N-acetylmuramoylhydrolase activity","type":"exact"},{"name":"mucopeptide glucohydrolase activity","type":"exact"},{"name":"muramidase activity","type":"exact"},{"name":"peptidoglycan N-acetylmuramoylhydrolase activity","type":"related"}],"termid":"GO:0003796"}


id: GO:0010431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination.","definition_xrefs":["PMID:16096971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"developmental maturation","termid":"GO:0021700"},{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seed maturation","termid":"GO:0010431"}


id: MONDO:1010299
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteochondrosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondrosis, non-human animal","secondary_identifiers":["OMIA:000750"],"termid":"MONDO:1010299","xrefs":{"Monarch":{"xref_id":"1010299"}}}


id: PBO:0069308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 564, pseudogene","termid":"PBO:0069308"}


id: PBO:0032713
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_error-prone_translesion_synthesis","termid":"PBO:0032713"}


id: FYPO:0007947
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_04551:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04551","name":"pmk1delta","uniquename":"SJAG_04551:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121267,121282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000079"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to echinocandin. Cells stop growing (and may die) at a concentration of echinocandin that allows wild type cells to grow.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_04551":null},"genotype_count":2,"genotypes_by_uniquename":{"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to echinocandin","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_00610"],"single_locus_genotype_uniquenames":["pck2delta","pmk1delta"],"termid":"FYPO:0007947","terms_by_termid":{"FYPO:0000079":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0067083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 118, pseudogene","termid":"PBO:0067083"}


id: GO:0042079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete GPI/GSI anchor metabolic process (obsolete GO:0042079)","synonyms":[{"name":"GPI/GSI anchor metabolic process","type":"exact"}],"termid":"GO:0042079"}


id: GO:0047595
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,4,5,6-tetrahydro-6-oxonicotinate + oxidized ferredoxin = 6-hydroxynicotinate + reduced ferredoxin.","definition_xrefs":["MetaCyc:6-HYDROXYNICOTINATE-REDUCTASE-RXN","EC:1.3.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor","termid":"GO:0016636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"6-hydroxynicotinate reductase activity","secondary_identifiers":["RHEA:17225"],"synonyms":[{"name":"1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase activity","type":"related"},{"name":"6-hydroxynicotinic reductase activity","type":"related"},{"name":"6-oxo-1,4,5,6-tetrahydronicotinate:ferredoxin oxidoreductase activity","type":"related"},{"name":"6-oxotetrahydro-nicotinate dehydrogenase activity","type":"related"},{"name":"6-oxotetrahydronicotinate dehydrogenase activity","type":"related"},{"name":"HNA reductase activity","type":"related"}],"termid":"GO:0047595"}


id: FYPO:0002097
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0002097"}


id: GO:2000434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein neddylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification by small protein conjugation or removal","termid":"GO:1903320"},{"relation_name":"regulates","term_name":"protein neddylation","termid":"GO:0045116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"regulation of protein neddylation","synonyms":[{"name":"regulation of RUB1-protein conjugation","type":"exact"}],"termid":"GO:2000434"}


id: PBO:0002940
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.3.1.76","termid":"PBO:0002940"}


id: SO:0000125
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An inducer molecule is required for transcription to occur.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptionally_regulated","termid":"SO:0000123"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally_induced","synonyms":[{"name":"transcriptionally induced","type":"exact"}],"termid":"SO:0000125"}


id: GO:0097611
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell surface furrow that wraps around a dinoflagellate cell; the transverse flagellum lies in it.","definition_xrefs":["GOC:at","PMID:7002229","Wikipedia:Dinoflagellate#Morphology"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface furrow","termid":"GO:0097610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0009986"}],"interesting_parent_ids":["GO:0009986","GO:0005575"],"is_obsolete":false,"name":"dinoflagellate cingulum","synonyms":[{"name":"cingulum","type":"broad"},{"name":"girdle","type":"related"},{"name":"transverse groove","type":"related"}],"termid":"GO:0097611"}


id: MONDO:0015719
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe hemophilia A is a form of hemophilia A characterized by a large deficiency of factor VIII leading to frequent spontaneous hemorrhage and abnormal bleeding as a result of minor injuries, or following surgery or tooth extraction.","definition_xrefs":["Orphanet:169802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemophilia A","termid":"MONDO:0010602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"severe hemophilia A","secondary_identifiers":["MEDGEN:543973","GARD:17059","SCTID:16872008","UMLS:C0272322"],"synonyms":[{"name":"severe factor VIII deficiency","type":"exact"},{"name":"severe haemophilia type A","type":"exact"},{"name":"severe hemophilia type A","type":"exact"}],"termid":"MONDO:0015719","xrefs":{"Monarch":{"xref_id":"0015719"}}}


id: PBO:0085137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; 18S rRNA biogenesis defect of the null mutant is functionally complemented by human EIF4A3","termid":"PBO:0085137"}


id: GO:0060329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the rear of the cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic actin-based contraction involved in rearward cell motility","synonyms":[{"name":"cytoplasmic actin-based contraction involved in rearward cell locomotion","type":"related"}],"termid":"GO:0060329"}


id: FYPO:0007514
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to manumycin A. Cells stop growing (and may die) at a concentration of manumycin A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to manumycin A","synonyms":[{"name":"hypersensitive to manumycin A","type":"exact"},{"name":"sensitive to manu-A","type":"exact"},{"name":"sensitive to manumycin A during mitotic cell cycle","type":"related"},{"name":"sensitive to manumycin A during vegetative growth","type":"exact"}],"termid":"FYPO:0007514"}


id: GO:0140533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont inhibits or disrupts the host's RNAi-mediated antiviral immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:17693253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host innate immune response","termid":"GO:0052170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host RNAi-mediated antiviral immune response","synonyms":[{"name":"suppression of host RNAi-mediated antiviral immune response","type":"exact"},{"name":"suppression of host RNAi-mediated antiviral immunity","type":"exact"},{"name":"suppression of host RNAi-mediated gene silencing","type":"exact"}],"termid":"GO:0140533"}


id: PBO:0050583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate 6-O-sulfotransferase 1","termid":"PBO:0050583"}


id: PBO:0018158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-galactose transmembrane transporter Gms1","termid":"PBO:0018158"}


id: PBO:0089821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I general transcription initiation factor subunit Rrn7","termid":"PBO:0089821"}


id: GO:0006441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete binding to mRNA cap (obsolete GO:0006441)","synonyms":[{"name":"binding to mRNA cap","type":"exact"}],"termid":"GO:0006441"}


id: GO:0045429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"regulation of nitric oxide biosynthetic process","termid":"GO:0045428"},{"relation_name":"is_a","term_name":"positive regulation of nitric oxide metabolic process","termid":"GO:1904407"},{"relation_name":"positively_regulates","term_name":"nitric oxide biosynthetic process","termid":"GO:0006809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nitric oxide biosynthetic process","synonyms":[{"name":"activation of nitric oxide biosynthetic process","type":"narrow"},{"name":"positive regulation of nitric oxide anabolism","type":"exact"},{"name":"positive regulation of nitric oxide biosynthesis","type":"exact"},{"name":"positive regulation of nitric oxide formation","type":"exact"},{"name":"positive regulation of nitric oxide synthesis","type":"exact"},{"name":"stimulation of nitric oxide biosynthetic process","type":"narrow"},{"name":"up regulation of nitric oxide biosynthetic process","type":"exact"},{"name":"up-regulation of nitric oxide biosynthetic process","type":"exact"},{"name":"upregulation of nitric oxide biosynthetic process","type":"exact"}],"termid":"GO:0045429"}


id: PBO:0052506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 20","termid":"PBO:0052506"}


id: FYPO:0002923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which ubiquitination of lysine at position 119 of histone H2B is normal (i.e. indistinguishable from wild type). Lysine 119 corresponds to the conserved C-terminal lysine of H2B.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone modification during vegetative growth","termid":"FYPO:0002600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H2B-K119 ubiquitination during vegetative growth","synonyms":[{"name":"normal histone H2B conserved C-terminal lysine ubiquitination during vegetative growth","type":"exact"},{"name":"normal histone H2B-K119 ubiquitination during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002923"}


id: PBO:0012569
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae YPT1","termid":"PBO:0012569"}


id: GO:0033932
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->3) linkages between alpha-L-fucose and N-acetylglucosamine residues in glycoproteins.","definition_xrefs":["EC:3.2.1.111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-L-fucosidase activity","termid":"GO:0004560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"1,3-alpha-L-fucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.111-RXN"],"synonyms":[{"name":"3-alpha-L-fucosyl-N-acetylglucosaminyl-glycoprotein fucohydrolase activity","type":"related"},{"name":"almond emulsin fucosidase I activity","type":"related"}],"termid":"GO:0033932"}


id: PBO:0078708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 1-3","termid":"PBO:0078708"}


id: MONDO:0005351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder most often seen in adolescent females characterized by a refusal to maintain a minimally normal body weight, an intense fear of gaining weight, a disturbance in body image, and, in postmenarcheal females, the development of amenorrhea.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating disorder","termid":"MONDO:0005451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anorexia nervosa","secondary_identifiers":["ICD9:307.1","ICD10CM:F50.0","MESH:D000856","DOID:8689","icd11.foundation:263852475","Orphanet:36297","MEDGEN:316","UMLS:C0003125","SCTID:56882008","NCIT:C34387"],"termid":"MONDO:0005351","xrefs":{"Monarch":{"xref_id":"0005351"}}}


id: PBO:0000107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase, pseudogene","termid":"PBO:0000107"}


id: PBO:0002553
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.51","termid":"PBO:0002553"}


id: PBO:0089875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone (ATP-dependent) Abo1","termid":"PBO:0089875"}


id: MONDO:0003975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma involving a male urethral gland.","definition_xrefs":["MONDO:patterns/carcinoma"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"},{"relation_name":"is_a","term_name":"male urethral cancer","termid":"MONDO:0004197"},{"relation_name":"is_a","term_name":"carcinoma of urethra","termid":"MONDO:0021327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"Littre gland carcinoma","secondary_identifiers":["MEDGEN:273092","DOID:6721","UMLS:C1516285","NCIT:C39865"],"synonyms":[{"name":"carcinoma of LittrC) glands","type":"exact"},{"name":"carcinoma of Littre glands","type":"exact"},{"name":"carcinoma of Littré glands","type":"exact"},{"name":"carcinoma of male urethral gland","type":"exact"},{"name":"male urethral gland carcinoma","type":"exact"}],"termid":"MONDO:0003975","xrefs":{"Monarch":{"xref_id":"0003975"}}}


id: PBO:0070117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 31 pseudogene","termid":"PBO:0070117"}


id: GO:0047543
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + palmitaldehyde = trans-hexadec-2-enal + H+ + NADPH.","definition_xrefs":["EC:1.3.1.27","RHEA:12444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-hexadecenal reductase activity","secondary_identifiers":["KEGG_REACTION:R02463","MetaCyc:2-HEXADECENAL-REDUCTASE-RXN"],"synonyms":[{"name":"hexadecanal: NADP+ oxidoreductase activity","type":"related"},{"name":"hexadecanal:NADP+ delta2-oxidoreductase activity","type":"related"}],"termid":"GO:0047543"}


id: PBO:0067072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 101, pseudogene","termid":"PBO:0067072"}


id: PBO:0042373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200 receptor 1","termid":"PBO:0042373"}


id: PBO:0079469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"twinfilin 1 pseudogene 1","termid":"PBO:0079469"}


id: GO:1901749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of leukotriene D4.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene catabolic process","termid":"GO:0036100"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"},{"relation_name":"is_a","term_name":"leukotriene D4 metabolic process","termid":"GO:1901748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629","GO:0006790"],"is_obsolete":false,"name":"leukotriene D4 catabolic process","synonyms":[{"name":"leukotriene D4 breakdown","type":"exact"},{"name":"leukotriene D4 catabolism","type":"exact"},{"name":"leukotriene D4 degradation","type":"exact"}],"termid":"GO:1901749"}


id: MONDO:0100238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of Fanconi renotubular syndrome that is inherited.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi renotubular syndrome","termid":"MONDO:0001083"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"inherited Fanconi renotubular syndrome","secondary_identifiers":["OMIMPS:134600"],"synonyms":[{"name":"hereditary Fanconi renotubular syndrome","type":"exact"}],"termid":"MONDO:0100238","xrefs":{"Monarch":{"xref_id":"0100238"}}}


id: GO:0061116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenesis process in which the ductus venosus changes to no longer permit blood flow after birth.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venous blood vessel morphogenesis","termid":"GO:0048845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ductus venosus closure","termid":"GO:0061116"}


id: GO:0007106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cytokinesis, protein recruitment (obsolete GO:0007106)","synonyms":[{"name":"cytokinesis, protein recruitment","type":"exact"}],"termid":"GO:0007106"}


id: PBO:0083936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Galactokinase; phosphorylates alpha-D-galactose to alpha-D-galactose-1-phosphate in the first step of galactose catabolism; expression regulated by Gal4p; human homolog GALK2 complements yeast null mutant; GAL1 has a paralog, GAL3, that arose from the whole genome duplication","termid":"PBO:0083936"}


id: PBO:0079312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 6","termid":"PBO:0079312"}


id: MONDO:0009964
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An asphyxiating thoracic dystrophy that has material basis in homozygous or compound heterozygous mutation in the IFT140 gene on chromosome 16p13.","definition_xrefs":["PMID:22503633","DOID:0110097"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"familial cystic renal disease","termid":"MONDO:0019741"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic retinitis pigmentosa (obsolete MONDO:0020240)","termid":"MONDO:0020240"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"},{"relation_name":"is_a","term_name":"IFT140-related recessive ciliopathy","termid":"MONDO:0100509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 9 with or without polydactyly","secondary_identifiers":["ICD9:759.89","MEDGEN:341455","UMLS:C1849437","SCTID:254092004","OMIM:266920","Orphanet:140969","GARD:15227"],"synonyms":[{"name":"Conorenal syndrome","type":"exact"},{"name":"Mainzer Saldino syndrome","type":"exact"},{"name":"Mainzer-Saldino syndrome","type":"exact"},{"name":"SRTD9","type":"exact"},{"name":"Saldino-Mainzer syndrome","type":"exact"},{"name":"renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia and skeletal dysplasia","type":"exact"},{"name":"renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia, and skeletal dysplasia","type":"related"},{"name":"renal dysplasia-retinal pigmentary dystrophy-cerebellar ataxia-skeletal dysplasia syndrome","type":"exact"},{"name":"short-rib thoracic dysplasia 9 with or without polydactyly","type":"exact"}],"termid":"MONDO:0009964","xrefs":{"Monarch":{"xref_id":"0009964"}}}


id: MOD:00941
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:488","PubMed:12175151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"dehydropyrrolizidine alkaloid (dehydroretronecine) derivatized cysteine","synonyms":[{"name":"DHP","type":"related"},{"name":"Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines","type":"related"}],"termid":"MOD:00941"}


id: PBO:0030440
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_tRNA_modification","termid":"PBO:0030440"}


id: FYPO:0000870
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation occurs to a lower extent than normal. All histone methylation may be affected, or methylation of specific sites on specific histones may be decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation during vegetative growth","termid":"FYPO:0000457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased histone methylation during vegetative growth","synonyms":[{"name":"decreased histone methylation during mitotic cell cycle","type":"related"},{"name":"reduced histone methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000870"}


id: PBO:0075684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid receptor associated and regulated protein","termid":"PBO:0075684"}


id: PBO:0017097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin family Schizosaccharomyces specific protein Mug170","termid":"PBO:0017097"}


id: MONDO:0007701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive familial heart block","termid":"MONDO:0019490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"progressive familial heart block type II","secondary_identifiers":["MEDGEN:333884","DOID:0111075","GARD:4879","ICD9:426.6","MESH:C564202","OMIM:140400","UMLS:C1841658","SCTID:698251009"],"synonyms":[{"name":"PFHB2","type":"exact"},{"name":"PFHBII","type":"related"},{"name":"heart block progressive familial type 2","type":"related"},{"name":"progressive familial heart block type 2","type":"related"},{"name":"progressive familial heart block, type II","type":"related"}],"termid":"MONDO:0007701","xrefs":{"Monarch":{"xref_id":"0007701"}}}


id: PBO:0038866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADARB2 antisense RNA 1","termid":"PBO:0038866"}


id: MONDO:0044880
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic exocrine neoplasm","termid":"MONDO:0021076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"cystic tumor of the pancreas","secondary_identifiers":["NCIT:C200227","ONCOTREE:PACT"],"termid":"MONDO:0044880","xrefs":{"Monarch":{"xref_id":"0044880"}}}


id: MONDO:0011142
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ehlers-Danlos syndrome, musculocontractural type is a congenital form of Ehlers-Danlos syndrome characterized by distinct craniofacial features, multiple contractures, progressive joint and skin laxity, adduction-flexion contractures of the thumbs, talipes equinovarus, bruisability and multisystem fragility-related manifestations.","definition_xrefs":["Orphanet:2953"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322","MONDO:0005267"],"is_obsolete":false,"name":"Ehlers-Danlos syndrome, musculocontractural type","secondary_identifiers":["NANDO:1200652","NANDO:2201262","SCTID:720860004","GARD:8486","UMLS:C1866294","MESH:C000600608","MEDGEN:356497"],"synonyms":[{"name":"ATCS","type":"exact"},{"name":"CHST14-related EDS","type":"exact"},{"name":"CHST14-related Ehlers-Danlos syndrome","type":"exact"},{"name":"D4ST1-deficient EDS","type":"exact"},{"name":"D4ST1-deficient Ehlers-Danlos syndrome","type":"exact"},{"name":"Dundar syndrome","type":"related"},{"name":"EDS, Kosho type","type":"exact"},{"name":"EDS, arthrogryposic type","type":"exact"},{"name":"EDS, musculocontractural type","type":"exact"},{"name":"EDS6B, formerly","type":"related"},{"name":"EDSMC","type":"related"},{"name":"EDSMC1","type":"related"},{"name":"EDSmc","type":"related"},{"name":"Ehlers-Danlos syndrome, Kosho type","type":"exact"},{"name":"Ehlers-Danlos syndrome, arthrogryposic type","type":"exact"},{"name":"Ehlers-Danlos syndrome, musculocontractural type 1","type":"related"},{"name":"Ehlers-Danlos syndrome, musculocontractural type, 1","type":"related"},{"name":"Ehlers-Danlos syndrome, type VIB, formerly","type":"related"},{"name":"Ehlers-Danlos syndrome, type Vib","type":"related"},{"name":"Ehlers-Danlos syndrome, type Vib, formerly","type":"related"},{"name":"MCEDS","type":"exact"},{"name":"adducted thumb clubfoot syndrome","type":"related"},{"name":"adducted thumb, clubfoot, and progressive joint and skin laxity syndrome","type":"related"},{"name":"adducted thumb-club foot syndrome","type":"related"},{"name":"adducted thumb-clubfoot syndrome","type":"exact"},{"name":"adducted thumbs Dundar type","type":"related"},{"name":"adducted thumbs-arthrogryposis syndrome, Dundar type","type":"exact"},{"name":"arthrogryposis, distal, with peculiar facies and hydronephrosis","type":"related"},{"name":"autosomal recessive adducted thumb-club foot syndrome","type":"related"},{"name":"musculocontractural EDS","type":"related"},{"name":"musculocontractural Ehlers-Danlos syndrome","type":"exact"}],"termid":"MONDO:0011142","xrefs":{"Monarch":{"xref_id":"0011142"}}}


id: PBO:0012544
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ApsixA hydrolase","termid":"PBO:0012544"}


id: PBO:0003552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial 3'-tRNA processing endonuclease Trz2","termid":"PBO:0003552"}


id: GO:0160231
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An actin-based cell projection extending laterally from the basolateral membrane of tuft cells in epithelial tissues, including the intestinal epithelium. These thin projections, typically 3-4 per cell and up to 3 micron long, directly contact the nuclei of adjacent epithelial cells, potentially facilitating intercellular communication and molecular exchange.","definition_xrefs":["PMID:28490731","PMID:37863104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-based cell projection","termid":"GO:0098858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cytospinule","termid":"GO:0160231"}


id: PBO:0062180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily N member 1 pseudogene","termid":"PBO:0062180"}


id: PBO:0080873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YME1L1 pseudogene 1","termid":"PBO:0080873"}


id: MONDO:0006801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the wall of the ileum. Representative examples include adenoma, carcinoma, and lymphoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine neoplasm","termid":"MONDO:0004251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"ileal neoplasm","secondary_identifiers":["MEDGEN:43825","MONDO:0021376","DOID:10156","EFO:1000981","SCTID:126835002","UMLS:C0020876","MESH:D007078","NCIT:C3130"],"synonyms":[{"name":"ileal tumor","type":"exact"},{"name":"ileal tumour","type":"exact"},{"name":"ileum neoplasm","type":"exact"},{"name":"ileum neoplasm (disease)","type":"exact"},{"name":"ileum tumor","type":"exact"},{"name":"ileum tumour","type":"exact"},{"name":"neoplasm of ileum","type":"exact"},{"name":"neoplasm of the ileum","type":"exact"},{"name":"tumor of ileum","type":"exact"},{"name":"tumor of the ileum","type":"exact"},{"name":"tumour of ileum","type":"exact"},{"name":"tumour of the ileum","type":"exact"}],"termid":"MONDO:0006801","xrefs":{"Monarch":{"xref_id":"0006801"}}}


id: RO:0002485
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"connected_to","termid":"RO:0002170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receives_input_from","termid":"RO:0002485"}


id: PBO:0057211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 378a","termid":"PBO:0057211"}


id: PBO:0005352
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.4.-","termid":"PBO:0005352"}


id: PBO:0060257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC target 1","termid":"PBO:0060257"}


id: GO:0015812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transport","termid":"GO:0006865"},{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyric acid transport","synonyms":[{"name":"4-aminobutanoate transport","type":"exact"},{"name":"4-aminobutyrate transport","type":"exact"},{"name":"GABA transport","type":"exact"}],"termid":"GO:0015812"}


id: PBO:0042937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroadherin","termid":"PBO:0042937"}


id: PBO:0038358
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-over-expressed_in","termid":"PBO:0038358"}


id: MOD:00471
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:93"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDT-maleimide-PEO-biotin","synonyms":[{"name":"EDT-maleimide-PEO-biotin","type":"related"}],"termid":"MOD:00471"}


id: MONDO:0022338
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"histiocytosis","termid":"MONDO:0002637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"ALK+ histiocytosis","synonyms":[{"name":"anaplastic lymphoma kinase positive histiocytosis","type":"related"}],"termid":"MONDO:0022338","xrefs":{"Monarch":{"xref_id":"0022338"}}}


id: GO:0000334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + O2 = cis,cis-2-amino-3-(3-oxoprop-1-enyl)but-2-enedioate + H+.","definition_xrefs":["RHEA:17953","EC:1.13.11.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"3-hydroxyanthranilate 3,4-dioxygenase activity","secondary_identifiers":["KEGG_REACTION:R02665","Reactome:R-HSA-71218","UM-BBD_reactionID:r1027","MetaCyc:1.13.11.6-RXN"],"synonyms":[{"name":"3-hydroxyanthranilate oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilate:oxygen 3,4-oxidoreductase (decyclizing)","type":"related"},{"name":"3-hydroxyanthranilic acid dioxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic acid oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic oxygenase activity","type":"related"},{"name":"3HAO","type":"related"}],"termid":"GO:0000334"}


id: PBO:0080495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor C and EGF domains","termid":"PBO:0080495"}


id: GO:0005893
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-2; comprises alpha, beta, and gamma subunits.","definition_xrefs":["PMID:3116143","GOC:mah","PMID:8266078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"interleukin-2 receptor complex","synonyms":[{"name":"IL-2 receptor complex","type":"exact"}],"termid":"GO:0005893"}


id: GO:0106165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay.","definition_xrefs":["PMID:30601114","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of exonucleolytic catabolism of deadenylated mRNA (obsolete GO:0106165)","termid":"GO:0106165"}


id: PBO:0002882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) polymerase Cid1","termid":"PBO:0002882"}


id: MONDO:0019281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete isolated genetic hair shaft abnormality (obsolete MONDO:0019281)","secondary_identifiers":["Orphanet:79366"],"synonyms":[{"name":"isolated hair shaft abnormality","type":"related"}],"termid":"MONDO:0019281","xrefs":{"Monarch":{"xref_id":"0019281"}}}


id: MONDO:0014060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"progressive retinal dystrophy due to retinol transport defect","secondary_identifiers":["OMIM:615147","ICD10CM:H35.5","GARD:17529","Orphanet:352718","UMLS:C3554593","MEDGEN:767507"],"synonyms":[{"name":"RDCCAS","type":"related"},{"name":"retinal dystrophy, iris coloboma, and comedogenic acne syndrome","type":"related"},{"name":"retinol dystrophy-iris coloboma-comedogenic acne syndrome","type":"exact"}],"termid":"MONDO:0014060","xrefs":{"Monarch":{"xref_id":"0014060"}}}


id: FYPO:0002509
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the palmitoylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification","termid":"FYPO:0002499"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation","termid":"FYPO:0002503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"increased protein palmitoylation","termid":"FYPO:0002509"}


id: PBO:0077738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tenascin XA (pseudogene)","termid":"PBO:0077738"}


id: PBO:0077699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNKS2 divergent transcript","termid":"PBO:0077699"}


id: PBO:0030359
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_hypoxia","termid":"PBO:0030359"}


id: MONDO:0001590
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paralysis of all four limbs.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"central nervous system disorder","termid":"MONDO:0002602"},{"relation_name":"is_a","term_name":"palsy","termid":"MONDO:0006496"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quadriplegia","secondary_identifiers":["ICD9:344.09","SCTID:11538006","ICD9:344.00","MEDGEN:19617","ICD10CM:G82.5","MESH:D011782","UMLS:C0034372","DOID:12835","NCIT:C50721","EFO:0009684"],"synonyms":[{"name":"bilateral diplegia","type":"exact"},{"name":"tetraplegia","type":"exact"}],"termid":"MONDO:0001590","xrefs":{"Monarch":{"xref_id":"0001590"}}}


id: MONDO:1011159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteoarthritis that occurs in koala.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteoarthritis, non-human animal","termid":"MONDO:1010297"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoarthritis, koala","secondary_identifiers":["OMIA:000747-38626"],"termid":"MONDO:1011159","xrefs":{"Monarch":{"xref_id":"1011159"}}}


id: MONDO:0006830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A precancerous condition characterized by the presence of abnormal whitish areas on the glans or prepuce of the penis. Risk factors include chronic irritation, inflammation, and infection of the penis, and poor genital hygiene.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"penile disorder","termid":"MONDO:0002036"},{"relation_name":"is_a","term_name":"leukoplakia","termid":"MONDO:0043243"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukoplakia of penis","secondary_identifiers":["DOID:8738","NCIT:C3151","SCTID:3323003","ICD10CM:N48.0","MedDRA:10024394","UMLS:C0022782","ICD9:607.0","MEDGEN:44036"],"synonyms":[{"name":"kraurosis of penis","type":"exact"},{"name":"kraurosis penis","type":"exact"},{"name":"leukoplakia of the penis","type":"exact"},{"name":"penile leukoplakia","type":"exact"}],"termid":"MONDO:0006830","xrefs":{"Monarch":{"xref_id":"0006830"}}}


id: SO:0001562
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_function_variant","termid":"SO:0001554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide_post_translational_processing_variant","synonyms":[{"name":"polypeptide post translational processing variant","type":"exact"}],"termid":"SO:0001562"}


id: GO:0061518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a microglial cell population by cell division.","definition_xrefs":["GOC:dph","PMID:17344397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell proliferation","termid":"GO:0014009"},{"relation_name":"is_a","term_name":"macrophage proliferation","termid":"GO:0061517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microglial cell proliferation","termid":"GO:0061518"}


id: FYPO:0005519
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of nucleosome-dependent ATPase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"abnormal nucleosome-dependent ATPase activity","termid":"FYPO:0005519"}


id: PBO:0066273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 1 member G, pseudogene","termid":"PBO:0066273"}


id: PBO:0086159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for proteasome assembly during quiescence; binds to base of the proteasome regulartory particle; required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources","termid":"PBO:0086159"}


id: PBO:0114107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane DUF2015 family conserved fungal protein","termid":"PBO:0114107"}


id: SO:0001600
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes the resulting polypeptide structure.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3D_polypeptide_structure_variant","termid":"SO:0001599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex_3D_structural_variant","synonyms":[{"name":"complex 3D structural variant","type":"exact"}],"termid":"SO:0001600"}


id: PBO:0068099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 406","termid":"PBO:0068099"}


id: PBO:0004553
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.-","termid":"PBO:0004553"}


id: GO:0034192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-galactonate, the anion of D-galactonic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate metabolic process","termid":"GO:0005975"},{"relation_name":"is_a","term_name":"galactonate metabolic process","termid":"GO:0019583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"D-galactonate metabolic process","synonyms":[{"name":"D-galactonate metabolism","type":"exact"}],"termid":"GO:0034192"}


id: MONDO:0009613
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive form of methylmalonic aciduria, caused by mutation(s) in the MMAA gene, encoding MMAA protein.","definition_xrefs":["NCIT:C142171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin B12-responsive methylmalonic acidemia","termid":"MONDO:0017214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"methylmalonic aciduria, cblA type","secondary_identifiers":["DOID:0060742","OMIM:251100","MEDGEN:344422","NANDO:2201105","Orphanet:79310","SCTID:73843004","NANDO:1200795","SCTID:82245003","UMLS:C1855109","GARD:5500"],"synonyms":[{"name":"MMA Cbl A type","type":"related"},{"name":"Methylmalonic aciduria, vitamin B12-responsive, cblA type","type":"exact"},{"name":"cblA - cobalamin locus a","type":"related"},{"name":"cblA methylmalonic acidemia","type":"related"},{"name":"cblB - cobalamin locus b","type":"related"},{"name":"cblB methylmalonic acidemia","type":"related"},{"name":"cobalamin A disease","type":"exact"},{"name":"cobalamin B disease","type":"exact"},{"name":"cobalamin locus A variant","type":"related"},{"name":"cobalamin locus B variant","type":"related"},{"name":"methylmalonic acidemia cblA type","type":"exact"},{"name":"methylmalonic acidemia, cblA type","type":"exact"},{"name":"methylmalonic aciduria cblA type","type":"exact"},{"name":"methylmalonic aciduria, cblA type","type":"exact"},{"name":"methylmalonic aciduria, vitamin B12-responsive due to a defect in synthesis of adenosylcobalamin cb1A type","type":"exact"},{"name":"methylmalonic aciduria, vitamin B12-responsive due to a defect in synthesis of adenosylcobalamin cblA type","type":"exact"},{"name":"methylmalonic aciduria, vitamin B12-responsive, due to defect in synthesis of adenosylcobalamin, cblA complementation type","type":"related"},{"name":"methylmalonic aciduria, vitamin B12-responsive, due to defect in synthesis of adenosylcobalamin, cblA type","type":"related"},{"name":"vitamin B12-responsive methylmalonic acidemia type cblA","type":"exact"},{"name":"vitamin B12-responsive methylmalonic aciduria type cblA","type":"exact"}],"termid":"MONDO:0009613","xrefs":{"Monarch":{"xref_id":"0009613"}}}


id: GO:0004935
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine and transmitting the signal across the membrane by activating the alpha-subunit of an associated heterotrimeric G-protein complex.","definition_xrefs":["GOC:bf","GOC:mah","IUPHAR_GPCR:1274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled amine receptor activity","termid":"GO:0008227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"adrenergic receptor activity","secondary_identifiers":["Wikipedia:Adrenergic_receptor"],"synonyms":[{"name":"adrenoceptor activity","type":"exact"}],"termid":"GO:0004935"}


id: PBO:0004885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog Aah4","termid":"PBO:0004885"}


id: PBO:0045526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTWD1 pseudogene 2","termid":"PBO:0045526"}


id: PBO:0064559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POMP pseudogene 1","termid":"PBO:0064559"}


id: PATO:0002115
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in a bearer by virtue of the bearer's containing fibrin.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrinoid","termid":"PATO:0002115"}


id: GO:0048674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in reformation of a growth cone by the tip of an injured axon, or in collateral sprouting of the axon. Collateral sprouting is the process in which outgrowths develop from the shafts of existing axons.","definition_xrefs":["GOC:jid","GOC:lm","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collateral sprouting","termid":"GO:0048668"},{"relation_name":"is_a","term_name":"sprouting of injured axon","termid":"GO:0048682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collateral sprouting of injured axon","termid":"GO:0048674"}


id: GO:0046354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of mannan, the main hemicellulose of soft (coniferous) wood, made up of D-mannose, D-glucose and D-galactose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannan metabolic process","termid":"GO:0010412"},{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"mannan biosynthetic process","synonyms":[{"name":"mannan anabolism","type":"exact"},{"name":"mannan biosynthesis","type":"exact"},{"name":"mannan formation","type":"exact"},{"name":"mannan synthesis","type":"exact"}],"termid":"GO:0046354"}


id: FYPO:0008226
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of phosphate (Pi) measured in a cell is higher than normal.","definition_xrefs":["PMID:37949217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular phosphate (Pi) level","termid":"FYPO:0008225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased total cellular phosphate (Pi) level","termid":"FYPO:0008226"}


id: GO:0007429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Sprouting of secondary branches in an open tracheal system. These form from the tips of primary branches and are formed by individual cells that roll up into unicellular tubes. An example of this is found in Drosophila melanogaster.","definition_xrefs":["PMID:29844090","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching involved in open tracheal system development","termid":"GO:0060446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary branching, open tracheal system","synonyms":[{"name":"secondary tracheal branching","type":"exact"}],"termid":"GO:0007429"}


id: MONDO:1010571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diabetes mellitus that occurs in domestic guinea pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes mellitus, non-human animal","termid":"MONDO:1010052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes mellitus, domestic guinea pig","secondary_identifiers":["OMIA:000279-10141"],"termid":"MONDO:1010571","xrefs":{"Monarch":{"xref_id":"1010571"}}}


id: GO:0048865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a stem cell.","definition_xrefs":["CL:0000034","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"stem cell differentiation","termid":"GO:0048863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stem cell fate commitment","termid":"GO:0048865"}


id: PBO:0076434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 11 like 10","termid":"PBO:0076434"}


id: PATO:0000011
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A time quality inhering in a bearer by virtue of how long the bearer has existed.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"time","termid":"PATO:0000165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"age","termid":"PATO:0000011"}


id: FYPO:0004428
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic cytokinesis is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis during vegetative growth","termid":"FYPO:0000032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"increased rate of cytokinesis","synonyms":[{"name":"increased rate of cytokinesis during mitotic cell cycle","type":"related"},{"name":"increased rate of cytokinesis during vegetative growth","type":"exact"},{"name":"increased rate of mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0004428"}


id: MONDO:0011152
data:
  {"annotated_genes":["SJAG_02313"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88915],"is_not":false,"summary":null,"term":"MONDO:0011152"}]},"cv_name":"mondo","definition":"3-Phosphoglycerate dehydrogenase deficiency (3-PGDH deficiency) is an autosomal recessive form of serine deficiency syndrome characterized clinically in the few reported cases by congenital microcephaly, psychomotor retardation and intractable seizures in the infantile form and by absence seizures, moderate developmental delay and behavioral disorders in the juvenile form","definition_xrefs":["Orphanet:79351"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"3-phosphoglycerate dehydrogenase deficiency","termid":"MONDO:0018491"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"PHGDH deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C566618","DOID:0050722","GARD:16718","OMIM:601815","UMLS:C1866174","MEDGEN:400935"],"synonyms":[{"name":"3-phosphoglycerate dehydrogenase deficiency, infantile/juvenile form","type":"related"},{"name":"PHGDH deficiency","type":"exact"},{"name":"PHGDHD","type":"related"},{"name":"PHOSPHOGLYCERATE dehydrogenase deficiency","type":"exact"}],"termid":"MONDO:0011152","terms_by_termid":{"MONDO:0011152":null},"xrefs":{"Monarch":{"xref_id":"0011152"}}}


id: PBO:0087569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit","termid":"PBO:0087569"}


id: PBO:0047246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 237 member B","termid":"PBO:0047246"}


id: PBO:0112231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Rtf2","termid":"PBO:0112231"}


id: PBO:0017048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug45","termid":"PBO:0017048"}


id: GO:0010075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in maintaining the size and shape of a meristem.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"part_of","term_name":"meristem maintenance","termid":"GO:0010073"},{"relation_name":"regulates","term_name":"meristem growth","termid":"GO:0035266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of meristem growth","synonyms":[{"name":"regulation of meristem size","type":"exact"}],"termid":"GO:0010075"}


id: PBO:0059765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 39","termid":"PBO:0059765"}


id: GO:0046027
data:
  {"annotated_genes":["SJAG_03162"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76518],"is_not":false,"summary":null,"term":"GO:0046027"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a glycerophospholipid + a 1,2-diacyl-sn-glycerol = a monoacylglycerophospholipid + a triacyl-sn-glycerol.","definition_xrefs":["RHEA:14057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03162":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"phospholipid:diacylglycerol acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:2.3.1.158","MetaCyc:2.3.1.158-RXN"],"synonyms":[{"name":"PDAT activity","type":"related"},{"name":"phospholipid:1,2-diacyl-sn-glycerol O-acyltransferase activity","type":"related"}],"termid":"GO:0046027","terms_by_termid":{"GO:0046027":null}}


id: PR:O59790
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aurora kinase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ark1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.13c","secondary_identifiers":["UniProtKB:O59790"],"synonyms":[{"name":"SPCC320.13c","type":"related"},{"name":"Spom972h-AURKB","type":"exact"},{"name":"aurora-related kinase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sex1","type":"related"}],"termid":"PR:O59790"}


id: MONDO:0017638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Manganese poisoning is associated with chronic inhalation of manganese particles by individuals who work with manganese ore. Clinical features include confusion; hallucinations; and an extrapyramidal syndrome (Parkinson disease, secondary) that includes rigidity; dystonia; retropulsion; and tremor. (Adams, Principles of Neurology, 6th ed, p1213)","definition_xrefs":["MESH:D020149"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare parkinsonian syndrome due to intoxication (obsolete MONDO:0017637)","termid":"MONDO:0017637"},{"relation_name":"is_a","term_name":"toxic encephalopathy","termid":"MONDO:0005527"},{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese poisoning","secondary_identifiers":["EFO:1001808","GARD:21264","ICD9:503","Orphanet:306682","SCTID:88687001","MedDRA:10058951"],"synonyms":[{"name":"Manganism","type":"exact"},{"name":"manganese intoxication","type":"exact"}],"termid":"MONDO:0017638","xrefs":{"Monarch":{"xref_id":"0017638"}}}


id: PBO:0080030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 16, pseudogene","termid":"PBO:0080030"}


id: PR:Q10408
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sro7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1F3.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.03","synonyms":[{"name":"Spom972h-sro7","type":"exact"}],"termid":"PR:Q10408"}


id: MONDO:0017636
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemiparkinsonism-hemiatrophy syndrome is a rare parkinsonian disorder characterized by unilateral body atrophy and slowly progressive, ipsilateral hemiparkinsonian signs (bradykinesia, rigidity, and tremor). Patients typically present with unilateral, action-induced dystonia, in upper or lower limbs, that progresses and becomes bilateral or with tremor which occurs predominantly at rest and progresses to hemiparkinsonism. Scoliosis, scapular winging, raised shoulders, brisk reflexes and extensor plantars are frequently associated.","definition_xrefs":["Orphanet:306669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parkinsonian disorder","termid":"MONDO:0021095"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemiparkinsonism-hemiatrophy syndrome","secondary_identifiers":["icd11.foundation:193784690","MEDGEN:1627807","GARD:21262","UMLS:C4545231"],"synonyms":[{"name":"Hp-HA syndrome","type":"exact"}],"termid":"MONDO:0017636","xrefs":{"Monarch":{"xref_id":"0017636"}}}


id: PBO:0067119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 164, pseudogene","termid":"PBO:0067119"}


id: PBO:0086692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; null mutant is sensitive to expression of the top1-T722A allele; SWAT-GFP and mCherry fusion proteins localize to the cell periphery and vacuole; TDA6 has a paralog, VPS62, that arose from the whole genome duplication","termid":"PBO:0086692"}


id: GO:0033928
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta-D-mannosidic linkages in (1->4)-beta-D-mannans, to remove successive mannobiose residues from the non-reducing chain ends.","definition_xrefs":["EC:3.2.1.100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"mannan 1,4-mannobiosidase activity","secondary_identifiers":["MetaCyc:3.2.1.100-RXN"],"synonyms":[{"name":"1,4-beta-D-mannan mannobiohydrolase activity","type":"broad"},{"name":"exo-1,4-beta-mannobiohydrolase activity","type":"related"},{"name":"exo-beta-mannanase activity","type":"related"},{"name":"mannan 1,4-beta-mannobiosidase activity","type":"related"}],"termid":"GO:0033928"}


id: GO:1990884
data:
  {"annotated_genes":["SJAG_01638","SJAG_01877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904812"},{"annotations":[109356,74335],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051391"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of one or more acetyl groups to specific residues in an RNA molecule.","definition_xrefs":["PMID:25402480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01638":null,"SJAG_01877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA acetylation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990884","terms_by_termid":{"GO:0051391":null,"GO:1904812":null}}


id: PBO:0075439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPANX family member N4","termid":"PBO:0075439"}


id: PBO:0076464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAMALIN antisense RNA 1","termid":"PBO:0076464"}


id: PBO:0043166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class II major histocompatibility complex transactivator","termid":"PBO:0043166"}


id: FYPO:0003161
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is too low to detect. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"},{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"RNA absent from cell","termid":"FYPO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"RNA absent from cell during vegetative growth","secondary_identifiers":["FYPO:0004509"],"synonyms":[{"name":"RNA absent from cell during mitotic cell cycle","type":"related"},{"name":"mRNA absent from cell","type":"narrow"},{"name":"mRNA absent from cell during mitotic cell cycle","type":"related"},{"name":"mRNA absent from cell during vegetative growth","type":"narrow"},{"name":"mRNA transcripts absent from cell","type":"narrow"},{"name":"messenger RNA absent from cell","type":"narrow"},{"name":"transcripts absent from cell during vegetative growth","type":"exact"},{"name":"undetectable RNA level during vegetative growth","type":"exact"},{"name":"undetectable mRNA level","type":"narrow"}],"termid":"FYPO:0003161"}


id: PBO:0088353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic tyrosine-tRNA ligase Yrs1","termid":"PBO:0088353"}


id: PBO:0086542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YCR022C is not an essential gene","termid":"PBO:0086542"}


id: PBO:0044291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome X open reading frame 66","termid":"PBO:0044291"}


id: GO:0097198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of three methyl groups to lysine at position 36 of the histone.","definition_xrefs":["GOC:se","PMID:17948059"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K36 trimethylation (obsolete GO:0097198)","termid":"GO:0097198"}


id: MONDO:1011855
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal sensorimotor polyneuropathy, non-human animal","secondary_identifiers":["OMIA:000813"],"termid":"MONDO:1011855","xrefs":{"Monarch":{"xref_id":"1011855"}}}


id: FYPO:0004243
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to DNA damage","synonyms":[{"name":"decreased protein kinase activity in response to DNA damage","type":"related"},{"name":"reduced protein kinase activity during cellular response to DNA damage","type":"exact"}],"termid":"FYPO:0004243"}


id: PBO:0046053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit F pseudogene 1","termid":"PBO:0046053"}


id: MONDO:0006964
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Overproduction of parathyroid hormone in response to influence external to the parathyroid glands.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperparathyroidism","termid":"MONDO:0001741"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secondary hyperparathyroidism","secondary_identifiers":["SCTID:91478007","MedDRA:10020708","MEDGEN:9368","MESH:D006962","icd11.foundation:1442752937","UMLS:C0020503","DOID:12466","NCIT:C113335","HP:0000867","EFO:1001173"],"synonyms":[{"name":"secondary hyperparathyroidism","type":"exact"},{"name":"secondary hyperparathyroidism (disease)","type":"exact"},{"name":"secondary hyperparathyroidism NOS","type":"narrow"}],"termid":"MONDO:0006964","xrefs":{"Monarch":{"xref_id":"0006964"}}}


id: PBO:0065537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine synthase 1","termid":"PBO:0065537"}


id: PBO:0013057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudokinase Tea5","termid":"PBO:0013057"}


id: PBO:0040989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BOLA2-SMG1P6 readthrough","termid":"PBO:0040989"}


id: MONDO:0000568
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypersensitivity reaction type II disease that involves the central nervous system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system disorder","termid":"MONDO:0002602"},{"relation_name":"is_a","term_name":"autoimmune disorder of the nervous system","termid":"MONDO:0002977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disorder of central nervous system","secondary_identifiers":["EFO:0020092","DOID:0060004"],"synonyms":[{"name":"central nervous system autoimmune disease","type":"exact"},{"name":"central nervous system hypersensitivity reaction type II disease","type":"exact"}],"termid":"MONDO:0000568","xrefs":{"Monarch":{"xref_id":"0000568"}}}


id: MONDO:0017235
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial omphalocele syndrome with facial dysmorphism is a rare genetic developmental defect during embryogenesis characterized by omphalocele associated with facial dysmorphism including flat face, short, upturned nose, long and wide philtrum and flattened maxillary arch and abnormalities of hands.","definition_xrefs":["Orphanet:280403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial omphalocele syndrome with facial dysmorphism","secondary_identifiers":["MEDGEN:1655514","GARD:21086","UMLS:C4749579"],"termid":"MONDO:0017235","xrefs":{"Monarch":{"xref_id":"0017235"}}}


id: GO:0000431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involving galactose that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by galactose","termid":"GO:0000409"},{"relation_name":"is_a","term_name":"carbon catabolite regulation of transcription from RNA polymerase II promoter","termid":"GO:0000429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0006355","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of transcription from RNA polymerase II promoter by galactose","termid":"GO:0000431"}


id: MONDO:1011809
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple lipomatosis, non-human animal","secondary_identifiers":["OMIA:000606"],"termid":"MONDO:1011809","xrefs":{"Monarch":{"xref_id":"1011809"}}}


id: MONDO:0600027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Serious heritable structural anomalies of the right side of the heart, including pulmonary atresia, tricuspid valve disease and Ebstein's anomaly, and right ventricular outflow tract obstruction and/or pulmonary stenosis, that are present from birth.","definition_xrefs":["EFO:0600032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital right-sided heart lesions","termid":"MONDO:0600027","xrefs":{"Monarch":{"xref_id":"0600027"}}}


id: PBO:0068217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 524","termid":"PBO:0068217"}


id: PBO:0028494
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_degradation_via_N-end_rule_pathway_during_meiosis","termid":"PBO:0028494"}


id: MONDO:0006974
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sarcoma characterized by the presence of small round or elongated malignant cells with a small amount of cytoplasm.","definition_xrefs":["NCIT:C3746"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete connective tissue cancer (obsolete MONDO:0002176)","termid":"MONDO:0002176"},{"relation_name":"is_a","term_name":"sarcoma","termid":"MONDO:0005089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"small cell sarcoma","secondary_identifiers":["DOID:3098","MESH:D018228","UMLS:C0206652","ICDO:8803/3","EFO:1001184","MEDGEN:60201"],"synonyms":[{"name":"small cell sarcoma","type":"exact"},{"name":"small cell sarcomas","type":"exact"}],"termid":"MONDO:0006974","xrefs":{"Monarch":{"xref_id":"0006974"}}}


id: GO:1905435
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone H3-K4 trimethylation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27541139"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K4 trimethylation (obsolete GO:1905435)","termid":"GO:1905435"}


id: MONDO:0957216
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 21","secondary_identifiers":["UMLS:C5830399","MEDGEN:1841035","OMIM:620311"],"termid":"MONDO:0957216","xrefs":{"Monarch":{"xref_id":"0957216"}}}


id: PBO:0091839
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"do not confuse with Sty1","termid":"PBO:0091839"}


id: PBO:0036440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex (derlin) Der1 (predicted)","termid":"PBO:0036440"}


id: FYPO:0006408
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of nitric oxide measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered cellular nitric oxide level","synonyms":[{"name":"abnormal cellular nitric oxide accumulation","type":"related"},{"name":"abnormal cellular nitric oxide level","type":"exact"},{"name":"altered cellular NO level","type":"exact"}],"termid":"FYPO:0006408"}


id: PBO:0049923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homogentisate 1,2-dioxygenase","termid":"PBO:0049923"}


id: FYPO:0007028
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the septin ring at the medial cortex is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to medial cortex septin ring during vegetative growth","synonyms":[{"name":"normal protein localisation to medial cortex septin ring during vegetative growth","type":"exact"},{"name":"normal protein localization to medial cortex septin ring during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007028"}


id: FYPO:0003704
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of histone deacetylase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal histone deacetylase activity","termid":"FYPO:0003703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"decreased histone deacetylase activity","synonyms":[{"name":"reduced histone deacetylase activity","type":"exact"}],"termid":"FYPO:0003704"}


id: PBO:0043956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma A","termid":"PBO:0043956"}


id: MOD:01671
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(L-isoaspartyl)-L-threonine, using free L-asparagine and releasing ammonia.","definition_xrefs":["RESID:AA0525#THR","PubMed:8706862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acylated residue","termid":"MOD:00671"},{"relation_name":"is_a","term_name":"O-(L-isoaspartyl)-L-threonine","termid":"MOD:01978"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoaspartyl)-L-threonine (active site intermediate)","synonyms":[{"name":"(2S)-2-amino-4-([(1S,2R)-1-amino-1-carboxypropan-2-yl]oxy)-4-oxobutanoic acid","type":"exact"},{"name":"(2S,3R)-2-amino-3-([(4S)-3-amino-3-carboxypropanoyl]oxy)propanoic acid","type":"exact"},{"name":"ACT_SITE O-isoaspartyl threonine intermediate","type":"exact"},{"name":"O(beta)-(beta-aspartyl)threonine","type":"exact"},{"name":"O-(L-isoaspartyl)-L-threonine","type":"exact"},{"name":"O3-(isoaspartyl)-threonine","type":"exact"}],"termid":"MOD:01671"}


id: GO:0007553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development, including the metamorphosis of immature forms and the development of the reproductive system and the maturation of oocytes in adult females.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of steroid metabolic process","termid":"GO:0019218"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"ecdysteroid metabolic process","termid":"GO:0045455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of ecdysteroid metabolic process","synonyms":[{"name":"regulation of ecdysteroid metabolism","type":"exact"}],"termid":"GO:0007553"}


id: PBO:0063920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide-3-kinase interacting protein 1","termid":"PBO:0063920"}


id: PR:O74853
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcriptional repressor NF-X1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04882","PANTHER:PTHR12360:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP12-associated protein 1 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.03","secondary_identifiers":["UniProtKB:O74853"],"synonyms":[{"name":"Spom972h-NFX1","type":"exact"}],"termid":"PR:O74853"}


id: PBO:0049441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 18","termid":"PBO:0049441"}


id: GO:0036498
data:
  {"annotated_genes":["SJAG_00790","SJAG_04435"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68300,95107],"is_not":false,"summary":null,"term":"GO:0036498"}]},"cv_name":"biological_process","definition":"The series of molecular signals mediated by the endoplasmic reticulum stress sensor IRE1 (Inositol-requiring transmembrane kinase/endonuclease). Begins with activation of IRE1 in response to endoplasmic reticulum (ER) stress, and ends with regulation of a downstream cellular process, e.g. transcription. One target of activated IRE1 is the transcription factor HAC1 in yeast, or XBP1 in mammals; IRE1 cleaves an intron of a mRNA coding for HAC1/XBP1 to generate an activated HAC1/XBP1 transcription factor, which controls the up regulation of UPR-related genes. At least in mammals, IRE1 can also signal through additional intracellular pathways including JNK and NF-kappaB.","definition_xrefs":["GOC:PARL","PMID:22013210","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum unfolded protein response","termid":"GO:0030968"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00790":null,"SJAG_04435":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"IRE1-mediated unfolded protein response","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-381070"],"synonyms":[{"name":"ERN1-mediated unfolded protein response","type":"related"},{"name":"IRE1 branch of UPR","type":"exact"},{"name":"IRE1 signal transduction pathway","type":"broad"},{"name":"IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"IRE1alpha unfolded protein response","type":"narrow"},{"name":"IRE1p unfolded protein response","type":"narrow"},{"name":"UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"inositol-requiring enzyme 1-mediated unfolded protein response","type":"related"},{"name":"inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"}],"termid":"GO:0036498","terms_by_termid":{"GO:0036498":null}}


id: PBO:0064824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 3F","termid":"PBO:0064824"}


id: MONDO:0000075
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neuronopathy, distal hereditary motor (obsolete MONDO:0000075)","termid":"MONDO:0000075","xrefs":{"Monarch":{"xref_id":"0000075"}}}


id: PBO:0069871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1158, pseudogene","termid":"PBO:0069871"}


id: GO:0098930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of organelles or molecules along microtubules in axons.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axo-dendritic transport","termid":"GO:0008088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"axonal transport","secondary_identifiers":["Wikipedia:Axoplasmic_transport"],"synonyms":[{"name":"axon cargo transport","type":"exact"},{"name":"axoplasmic transport","type":"exact"}],"termid":"GO:0098930"}


id: PBO:0061473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding protein 2","termid":"PBO:0061473"}


id: PBO:0082780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the SWR1 complex; complex exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082780"}


id: PBO:0063761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyhomeotic homolog 2","termid":"PBO:0063761"}


id: PBO:0029476
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-shortened_telomeres","termid":"PBO:0029476"}


id: RO:0002554
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of hyperparasite of","direct_ancestors":[{"relation_name":"is_a","term_name":"host_of","termid":"RO:0002453"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparasitized_by","synonyms":[{"name":"has epiparasite","type":"related"},{"name":"has hyperparasite","type":"related"},{"name":"hyperparasitoidized by","type":"related"}],"termid":"RO:0002554"}


id: MONDO:0032762
data:
  {"annotated_genes":["SJAG_02155"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89154],"is_not":false,"summary":null,"term":"MONDO:0032762"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02155":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 115","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618457","DOID:0111643","MEDGEN:1681630","UMLS:C5193108"],"synonyms":[{"name":"DFNB115","type":"narrow"},{"name":"deafness, autosomal recessive 115","type":"narrow"}],"termid":"MONDO:0032762","terms_by_termid":{"MONDO:0032762":null},"xrefs":{"Monarch":{"xref_id":"0032762"}}}


id: PBO:0029305
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_G0","termid":"PBO:0029305"}


id: MONDO:0021925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the tracheobronchial tree.","definition_xrefs":["NCIT:C122784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lower respiratory tract disorder","termid":"MONDO:0000270"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tracheobronchitis","secondary_identifiers":["MEDGEN:508208","SCTID:13617004","UMLS:C0040586","icd11.foundation:1889351414"],"synonyms":[{"name":"Tracheobronchitis","type":"related"},{"name":"tracheobronchitis","type":"exact"}],"termid":"MONDO:0021925","xrefs":{"Monarch":{"xref_id":"0021925"}}}


id: MONDO:0008027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular atrophy, malignant neurogenic","secondary_identifiers":["UMLS:C1834689","OMIM:158650","MEDGEN:322469","MESH:C563559"],"synonyms":[{"name":"muscular atrophy, malignant neurogenic","type":"exact"}],"termid":"MONDO:0008027","xrefs":{"Monarch":{"xref_id":"0008027"}}}


id: PBO:0055623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3062","termid":"PBO:0055623"}


id: MONDO:0005486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tooth disease characterized by failure to develop one or more missing teeth.","definition_xrefs":["DOID:0050591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"tooth disorder","termid":"MONDO:0006999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tooth agenesis","secondary_identifiers":["EFO:0005410","MEDGEN:43794","Orphanet:2227","GARD:16908","icd11.foundation:1559717619","ICD9:520.0","MESH:D000848","ICD10CM:K00.0","OMIMPS:106600","Orphanet:99798","SCTID:16958000","SCTID:64969001","UMLS:C0020608"],"synonyms":[{"name":"familial tooth agenesis","type":"exact"},{"name":"hypodontia","type":"exact"},{"name":"oligodontia","type":"narrow"},{"name":"selective tooth agenesis","type":"exact"},{"name":"tooth agenesis, selective","type":"exact"}],"termid":"MONDO:0005486","xrefs":{"Monarch":{"xref_id":"0005486"}}}


id: GO:0033984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = indole + D-glyceraldehyde 3-phosphate.","definition_xrefs":["EC:4.1.2.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"indole-3-glycerol-phosphate lyase activity","secondary_identifiers":["RHEA:14081","KEGG_REACTION:R02340","MetaCyc:RXN0-2381"],"synonyms":[{"name":"(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase (indole-forming) activity","type":"related"},{"name":"(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase activity","type":"related"},{"name":"BX1","type":"related"},{"name":"IGL","type":"related"},{"name":"TSA","type":"related"},{"name":"indole glycerol phosphate hydrolase activity","type":"related"},{"name":"indole synthase activity","type":"related"},{"name":"indole-3-glycerol phosphate lyase activity","type":"related"},{"name":"indole-3-glycerolphosphate D-glyceraldehyde-3-phosphate-lyase activity","type":"related"},{"name":"indoleglycerolphosphate aldolase activity","type":"related"},{"name":"tryptophan synthase alpha activity","type":"narrow"},{"name":"tryptophan synthase alpha subunit activity","type":"narrow"}],"termid":"GO:0033984"}


id: MONDO:0007680
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multinodular goiter - cystic kidney - polydactyly syndrome is a very rare syndrome characterized by the association of multinodular goiter, cystic renal disease and digital anomalies.","definition_xrefs":["Orphanet:2091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multinodular goiter-cystic kidney-polydactyly syndrome","secondary_identifiers":["SCTID:723409007","GARD:1671","MEDGEN:333929","UMLS:C1841853","MESH:C535986","OMIM:138790"],"synonyms":[{"name":"Daneman Davy Mancer syndrome","type":"related"},{"name":"Daneman-Davy-Mancer syndrome","type":"exact"},{"name":"MNG/CRD/Da","type":"related"},{"name":"goiter, multinodular, cystic renal disease, and digital anomalies","type":"related"},{"name":"multinodular goiter - cystic kidney - polydactyly","type":"related"},{"name":"multinodular goiter, cystic renal disease, and digital anomalies","type":"related"},{"name":"multinodular goiter/cystic renal disease/digital anomalies","type":"related"},{"name":"multinodular goitre - cystic kidney - polydactyly","type":"related"},{"name":"thyroid-renal-digital anomalies","type":"exact"}],"termid":"MONDO:0007680","xrefs":{"Monarch":{"xref_id":"0007680"}}}


id: MONDO:0012390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis multiplex with deafness, inguinal hernias, and early death","secondary_identifiers":["MESH:C535381","MEDGEN:400644","UMLS:C1864939","OMIM:610001"],"synonyms":[{"name":"arthrogryposis multiplex with deafness, inguinal hernias, and early death","type":"exact"}],"termid":"MONDO:0012390","xrefs":{"Monarch":{"xref_id":"0012390"}}}


id: MONDO:0005886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the mucosal lining of the mouth with the fungus Candida albicans.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidiasis","termid":"MONDO:0002026"},{"relation_name":"is_a","term_name":"mouth disorder","termid":"MONDO:0006858"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oral candidiasis","secondary_identifiers":["UMLS:C0006849","MEDGEN:14300","EFO:0007406","SCTID:79740000","ICD9:112.0","MESH:D002180","NCIT:C28137","DOID:14262"],"synonyms":[{"name":"candidiasis of mouth","type":"exact"},{"name":"mouth candidiasis","type":"exact"},{"name":"oral moniliasis","type":"exact"},{"name":"thrush","type":"broad"},{"name":"thrush, oral","type":"exact"}],"termid":"MONDO:0005886","xrefs":{"Monarch":{"xref_id":"0005886"}}}


id: MONDO:0024313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection caused by Staphylococcus.","definition_xrefs":["NCIT:C35038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"staphylococcal infection","secondary_identifiers":["MESH:D013203","MEDGEN:52483","EFO:1001849","UMLS:C0038160","SCTID:56038003"],"synonyms":[{"name":"staphylococcal infection","type":"exact"}],"termid":"MONDO:0024313","xrefs":{"Monarch":{"xref_id":"0024313"}}}


id: GO:1900112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone H3-K9 trimethylation.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K9 trimethylation (obsolete GO:1900112)","termid":"GO:1900112"}


id: PBO:0056269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEF2 activating motif and SAP domain containing transcriptional regulator","termid":"PBO:0056269"}


id: PBO:0044159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTD small phosphatase like 2","termid":"PBO:0044159"}


id: PBO:0066634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIMS binding protein 2","termid":"PBO:0066634"}


id: PBO:0047839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD dependent oxidoreductase domain containing 2","termid":"PBO:0047839"}


id: GO:1901687
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glutathione derivative.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"glutathione derivative metabolic process","termid":"GO:1901685"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"glutathione derivative biosynthetic process","secondary_identifiers":["Reactome:R-HSA-156590"],"synonyms":[{"name":"glutathione derivative anabolism","type":"exact"},{"name":"glutathione derivative biosynthesis","type":"exact"},{"name":"glutathione derivative formation","type":"exact"},{"name":"glutathione derivative synthesis","type":"exact"}],"termid":"GO:1901687"}


id: PBO:0048550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP dependent ribosome recycling factor mitochondrial 2","termid":"PBO:0048550"}


id: PBO:0085238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress","termid":"PBO:0085238"}


id: GO:1901390
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transforming growth factor beta activation.","definition_xrefs":["GOC:sl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transforming growth factor beta activation (obsolete GO:1901390)","synonyms":[{"name":"activation of L-TGF-beta activation","type":"exact"},{"name":"activation of TGF-B activation","type":"exact"},{"name":"activation of TGF-beta activation","type":"exact"},{"name":"activation of TGFB activation","type":"exact"},{"name":"activation of TGFbeta activation","type":"exact"},{"name":"activation of latent TGF-beta activation","type":"exact"},{"name":"activation of transforming growth factor beta activation","type":"narrow"},{"name":"positive regulation of L-TGF-beta activation","type":"exact"},{"name":"positive regulation of TGF-B activation","type":"exact"},{"name":"positive regulation of TGF-beta activation","type":"exact"},{"name":"positive regulation of TGFB activation","type":"exact"},{"name":"positive regulation of TGFbeta activation","type":"exact"},{"name":"positive regulation of latent TGF-beta activation","type":"exact"},{"name":"up regulation of L-TGF-beta activation","type":"exact"},{"name":"up regulation of TGF-B activation","type":"exact"},{"name":"up regulation of TGF-beta activation","type":"exact"},{"name":"up regulation of TGFB activation","type":"exact"},{"name":"up regulation of TGFbeta activation","type":"exact"},{"name":"up regulation of latent TGF-beta activation","type":"exact"},{"name":"up regulation of transforming growth factor beta activation","type":"exact"},{"name":"up-regulation of L-TGF-beta activation","type":"exact"},{"name":"up-regulation of TGF-B activation","type":"exact"},{"name":"up-regulation of TGF-beta activation","type":"exact"},{"name":"up-regulation of TGFB activation","type":"exact"},{"name":"up-regulation of TGFbeta activation","type":"exact"},{"name":"up-regulation of latent TGF-beta activation","type":"exact"},{"name":"up-regulation of transforming growth factor beta activation","type":"exact"},{"name":"upregulation of L-TGF-beta activation","type":"exact"},{"name":"upregulation of TGF-B activation","type":"exact"},{"name":"upregulation of TGF-beta activation","type":"exact"},{"name":"upregulation of TGFB activation","type":"exact"},{"name":"upregulation of TGFbeta activation","type":"exact"},{"name":"upregulation of latent TGF-beta activation","type":"exact"},{"name":"upregulation of transforming growth factor beta activation","type":"exact"}],"termid":"GO:1901390"}


id: GO:0004596
data:
  {"annotated_genes":["SJAG_04631","SJAG_03537","SJAG_02726","SJAG_01826","SJAG_04131"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[120058],"is_not":false,"summary":null,"term":"GO:0004596"},{"annotations":[117407,105597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120518"},{"annotations":[79306,75985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990189"},{"annotations":[91406],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008999"},{"annotations":[79307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990190"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + an N-terminal L-alpha-aminoacyl-[protein] = CoA + H+ + N-terminal Nalpha-acetyl-L-alpha-aminoacyl-[protein].","definition_xrefs":["RHEA:21028","PMID:30054468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein N-acetyltransferase activity","termid":"GO:0034212"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01826":null,"SJAG_02726":null,"SJAG_03537":null,"SJAG_04131":null,"SJAG_04631":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0034212","GO:0016740","GO:0003674","GO:0140096","GO:0016746"],"is_obsolete":false,"name":"protein-N-terminal amino-acid acetyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.1.255","Reactome:R-HSA-6814090"],"synonyms":[{"name":"N(alpha)-acetyltransferase activity","type":"related"},{"name":"NAT activity","type":"related"},{"name":"acetyl-CoA:peptide alpha-N-acetyltransferase activity","type":"exact"},{"name":"acetyl-CoA:peptide nalpha-acetyltransferase activity","type":"exact"},{"name":"amino-terminal amino acid-acetylating enzyme activity","type":"related"},{"name":"beta-endorphin acetyltransferase activity","type":"narrow"},{"name":"nalpha-acetyltransferase activity","type":"exact"},{"name":"peptide acetyltransferase activity","type":"related"},{"name":"peptide alpha-N-acetyltransferase activity","type":"exact"},{"name":"protein N-terminal acetyltransferase activity","type":"exact"}],"termid":"GO:0004596","terms_by_termid":{"GO:0004596":null,"GO:0008999":null,"GO:0120518":null,"GO:1990189":null,"GO:1990190":null}}


id: PBO:0069876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1163, pseudogene","termid":"PBO:0069876"}


id: GO:0051201
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of prosthetic group metabolic process (obsolete GO:0051201)","synonyms":[{"name":"down regulation of prosthetic group metabolic process","type":"exact"},{"name":"down-regulation of prosthetic group metabolic process","type":"exact"},{"name":"downregulation of prosthetic group metabolic process","type":"exact"},{"name":"inhibition of prosthetic group metabolic process","type":"narrow"},{"name":"negative regulation of coenzyme and prosthetic group metabolic process","type":"broad"},{"name":"negative regulation of coenzyme and prosthetic group metabolism","type":"broad"},{"name":"negative regulation of prosthetic group metabolism","type":"exact"}],"termid":"GO:0051201"}


id: GO:0002767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell capable of inhibiting an immune response.","definition_xrefs":["ISBN:0781735149","PMID:15771571","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-inhibiting signal transduction","termid":"GO:0002765"},{"relation_name":"is_a","term_name":"immune response-regulating cell surface receptor signaling pathway","termid":"GO:0002768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"immune response-inhibiting cell surface receptor signaling pathway","synonyms":[{"name":"immune response-inhibiting cell surface receptor signalling pathway","type":"exact"}],"termid":"GO:0002767"}


id: PBO:0069494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 761, pseudogene","termid":"PBO:0069494"}


id: GO:0051492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament bundle assembly","termid":"GO:0032231"},{"relation_name":"is_a","term_name":"regulation of actomyosin structure organization","termid":"GO:0110020"},{"relation_name":"regulates","term_name":"stress fiber assembly","termid":"GO:0043149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0044085","GO:0030036"],"is_obsolete":false,"name":"regulation of stress fiber assembly","synonyms":[{"name":"regulation of stress fibre biosynthesis","type":"related"},{"name":"regulation of stress fibre formation","type":"exact"}],"termid":"GO:0051492"}


id: MONDO:0007667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Subependymoma is a rare and slow growing type of ependymoma, often presenting in middle-aged adults, found more commonly in men than in women, usually located in the fourth and lateral ventricles and manifesting with variable symptoms including headache, nausea, and loss of balance. In some cases it can be asymptomatic. It is usually associated with a better prognosis than other forms of ependymoma.","definition_xrefs":["Orphanet:251639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"low grade ependymoma","termid":"MONDO:0016697"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subependymoma","secondary_identifiers":["NCIT:C3795","ICDO:9383/1","ONCOTREE:SUBE","MEDGEN:64637","EFO:1000553","GARD:10070","MESH:D018315","UMLS:C0206725","DOID:4843"],"synonyms":[{"name":"SUBEPENDYMOMA, benign","type":"exact"},{"name":"WHO grade I ependymal neoplasm","type":"exact"},{"name":"WHO grade I ependymal tumor","type":"exact"},{"name":"WHO grade I ependymal tumour","type":"exact"},{"name":"mixed subependymoma-ependymoma","type":"exact"},{"name":"subependymal astrocytoma","type":"exact"},{"name":"subependymal astrocytoma (formerly)","type":"related"},{"name":"subependymal glioma","type":"exact"},{"name":"subependymoma","type":"exact"}],"termid":"MONDO:0007667","xrefs":{"Monarch":{"xref_id":"0007667"}}}


id: PBO:0047915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2)","termid":"PBO:0047915"}


id: GO:0043373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an immature T cell becomes committed to becoming a CD4-positive, alpha-beta T cell.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell lineage commitment","termid":"GO:0002363"},{"relation_name":"is_a","term_name":"CD4-positive or CD8-positive, alpha-beta T cell lineage commitment","termid":"GO:0043369"},{"relation_name":"part_of","term_name":"CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD4-positive, alpha-beta T cell lineage commitment","synonyms":[{"name":"CD4-positive, alpha-beta T lymphocyte lineage commitment","type":"exact"},{"name":"CD4-positive, alpha-beta T-cell lineage commitment","type":"exact"},{"name":"CD4-positive, alpha-beta T-lymphocyte lineage commitment","type":"exact"}],"termid":"GO:0043373"}


id: PBO:0016985
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-expression of nus1 and rer2 functionally complements a triple deletion of NUS1, RER2 and SRT1 in S. cerevisiae","termid":"PBO:0016985"}


id: PBO:0001774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MutS protein homolog 3","termid":"PBO:0001774"}


id: GO:0018108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.","definition_xrefs":["RESID:AA0039"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphorylation","termid":"GO:0006468"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"}


id: FYPO:0003092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at a replication fork pausing site within the mating-type region in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin binding","termid":"FYPO:0002577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased chromatin binding at mating-type region replication fork barrier","synonyms":[{"name":"reduced chromatin binding at mating-type region replication fork barrier","type":"exact"}],"termid":"FYPO:0003092"}


id: GO:0046537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction does not require the cofactor 2,3-bisphosphoglycerate.","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity (obsolete GO:0046537)","termid":"GO:0046537"}


id: PBO:0040516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"axonemal dynein light chain domain containing 1","termid":"PBO:0040516"}


id: PBO:0028251
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-branched_septum","termid":"PBO:0028251"}


id: GO:0018626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2-halobenzoate + NADH + O2 + H+ = a halide anion + catechol + CO2 + NAD+.","definition_xrefs":["RHEA:53736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-halobenzoate 1,2-dioxygenase activity","secondary_identifiers":["EC:1.14.12.13","MetaCyc:RXN-13706"],"synonyms":[{"name":"2-chlorobenzoate 1,2-dioxygenase activity","type":"narrow"},{"name":"2-chlorobenzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating, dechlorinating, decarboxylating)","type":"related"}],"termid":"GO:0018626"}


id: GO:1901562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to paraquat","termid":"GO:1901562"}


id: FYPO:0003036
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a normal (i.e. indistinguishable from wild type) extent during a cellular response to ultraviolet light. All genes, or a specific subset of genes, may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal transcription during cellular response to UV","synonyms":[{"name":"normal transcription during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"normal transcription during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal transcription during cellular response to ultraviolet light","type":"exact"}],"termid":"FYPO:0003036"}


id: MONDO:0007110
data:
  {"annotated_genes":["SJAG_02335","SJAG_01296"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87496,87497],"is_not":false,"summary":null,"term":"MONDO:0007110"}]},"cv_name":"mondo","definition":"Any Diamond-Blackfan anemia in which the cause of the disease is a mutation in the RPS19 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01296":null,"SJAG_02335":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:390966","NCIT:C176911","DOID:0111895","OMIM:105650","UMLS:C2676137","MESH:C567302","GARD:15039"],"synonyms":[{"name":"Aase syndrome","type":"related"},{"name":"Aase-Smith syndrome 2","type":"related"},{"name":"Blackfan-Diamond syndrome","type":"related"},{"name":"DBA","type":"broad"},{"name":"DBA1","type":"related"},{"name":"Diamond-Blackfan Anaemia type 1","type":"exact"},{"name":"Diamond-Blackfan Anemia type 1","type":"exact"},{"name":"Diamond-Blackfan anaemia caused by mutation in RPS19","type":"exact"},{"name":"Diamond-Blackfan anemia 1","type":"exact"},{"name":"Diamond-Blackfan anemia caused by mutation in RPS19","type":"exact"},{"name":"RPS19 Diamond-Blackfan anaemia","type":"exact"},{"name":"RPS19 Diamond-Blackfan anemia","type":"exact"},{"name":"Red cell aplasia, Pure, hereditary","type":"related"},{"name":"anemia, congenital erythroid hypoplastic","type":"related"},{"name":"anemia, congenital hypoplastic, of Blackfan and Diamond","type":"related"},{"name":"aregenerative Anemia, chronic congenital","type":"related"},{"name":"erythrogenesis imperfecta","type":"related"}],"termid":"MONDO:0007110","terms_by_termid":{"MONDO:0007110":null},"xrefs":{"Monarch":{"xref_id":"0007110"}}}


id: GO:0006641
data:
  {"annotated_genes":["SJAG_02683","SJAG_03604","SJAG_02907","SJAG_03609","SJAG_02763","SJAG_04041","SJAG_02089","SJAG_03162","SJAG_01036","SJAG_02543","SJAG_02487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76519,92042,79006,73331],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019432"},{"annotations":[93908,100479,73443,119650],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"},{"annotations":[92122,93909,116848,95678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006642"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol metabolic process","termid":"GO:0006639"}],"gene_count":11,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02487":null,"SJAG_02543":null,"SJAG_02683":null,"SJAG_02763":null,"SJAG_02907":null,"SJAG_03162":null,"SJAG_03604":null,"SJAG_03609":null,"SJAG_04041":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"triglyceride metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8979227"],"synonyms":[{"name":"triacylglycerol metabolic process","type":"exact"},{"name":"triacylglycerol metabolism","type":"exact"},{"name":"triglyceride metabolism","type":"exact"}],"termid":"GO:0006641","terms_by_termid":{"GO:0006642":null,"GO:0019432":null,"GO:0019433":null}}


id: PBO:0081688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 609","termid":"PBO:0081688"}


id: MONDO:0006614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, benign, chronic disease characterized by sterile pustular eruption, typically involving the flexural sites of the trunk and proximal extremities.","definition_xrefs":["Orphanet:48377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune bullous skin disease","termid":"MONDO:0019337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"subcorneal pustular dermatosis","secondary_identifiers":["GARD:13606","ICD9:694.1","EFO:1000771","MEDGEN:108687","SCTID:25147002","DOID:8508","icd11.foundation:1952122675","UMLS:C0600336","ICD10CM:L13.1","MESH:D012872","MedDRA:10042342"],"synonyms":[{"name":"Sneddon-Wilkinson disease","type":"exact"},{"name":"Sneddon-Wilkinson disease or syndrome","type":"exact"},{"name":"pustulosis subcornealis","type":"exact"},{"name":"subcorneal pustular dermatitis","type":"exact"},{"name":"subcorneal pustular dermatosis","type":"exact"}],"termid":"MONDO:0006614","xrefs":{"Monarch":{"xref_id":"0006614"}}}


id: PBO:0071777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P0 pseudogene 5","termid":"PBO:0071777"}


id: PBO:0048708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine receptor beta","termid":"PBO:0048708"}


id: GO:0043964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host adenylate cyclase-mediated signal transduction (obsolete GO:0043964)","synonyms":[{"name":"positive regulation by symbiont of host adenylate cyclase-mediated signal transduction","type":"exact"}],"termid":"GO:0043964"}


id: GO:0004970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor activity","termid":"GO:0008066"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"transmitter-gated monoatomic ion channel activity","termid":"GO:0022824"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0038023","GO:0003674"],"is_obsolete":false,"name":"glutamate-gated receptor activity","synonyms":[{"name":"ionotropic glutamate receptor activity","type":"exact"}],"termid":"GO:0004970"}


id: MOD:00517
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.","definition_xrefs":["Unimod:149","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"Hex1HexNAc1NeuAc1 glycosylated residue","synonyms":[{"name":"Hex(1)HexNAc(1)NeuAc(1)","type":"related"},{"name":"Hex1HexNAc1NeuAc1","type":"related"},{"name":"NeuAc-Hex-HexNAc","type":"exact"}],"termid":"MOD:00517"}


id: GO:0046707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving IDP, inosine 5'-diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate metabolic process","termid":"GO:0009179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"IDP metabolic process","synonyms":[{"name":"IDP metabolism","type":"exact"}],"termid":"GO:0046707"}


id: GO:0009892
data:
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id: PBO:0082840
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id: GO:0015103
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id: PBO:0091299
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id: GO:0039695
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id: MONDO:0020566
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id: GO:0042706
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id: GO:0006569
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id: PBO:0000692
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id: PBO:0027781
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id: PBO:0050000
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id: PBO:0116245
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id: PBO:0055068
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id: FYECO:0000408
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id: MONDO:1040050
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id: PBO:0034639
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id: PBO:0089959
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id: PBO:0044826
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id: PBO:0049370
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id: PBO:0075195
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id: GO:0004876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the C3a product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:mah","GOC:add","GOC:signaling","GOC:pg","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement receptor activity","termid":"GO:0004875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"complement component C3a receptor activity","secondary_identifiers":["GO:0004943"],"synonyms":[{"name":"C3a anaphylatoxin receptor activity","type":"related"}],"termid":"GO:0004876"}


id: PBO:0091605
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2 sequence errors 5368262TC->T 5368273 and G->GT would change amino acids PPIYGL to PPYTVL","termid":"PBO:0091605"}


id: PBO:0029196
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_threonine_phosphorylation_during_mitotic_M_phase","termid":"PBO:0029196"}


id: GO:0034925
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pyrene + O2 + 2 H+ + 2 e- = pyrene-4,5-oxide + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pyrene 4,5-monooxygenase activity (obsolete GO:0034925)","termid":"GO:0034925"}


id: MONDO:0021183
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"deltaretrovirus infections","termid":"MONDO:0021184"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTLV-2 infection","secondary_identifiers":["EFO:1001349","UMLS:C0020102","MEDGEN:42515","MESH:D015491","SCTID:425740005"],"synonyms":[{"name":"HTLV II INFECT","type":"related"},{"name":"HTLV-2 infection","type":"exact"},{"name":"HTLV-II Infection","type":"related"},{"name":"HTLV-II Infections","type":"related"},{"name":"HTLV-II infection","type":"related"},{"name":"Human T lymphotropic Virus 2 Infection","type":"related"},{"name":"Human T lymphotropic Virus 2 Infections","type":"related"},{"name":"Human T-lymphotropic Virus 2 Infection","type":"related"},{"name":"Human T-lymphotropic Virus 2 Infections","type":"related"},{"name":"Human T-lymphotropic virus 2 infection","type":"related"},{"name":"INFECT HTLV II","type":"related"},{"name":"Infection, HTLV-II","type":"related"},{"name":"Infections, HTLV II","type":"related"},{"name":"Infections, HTLV-II","type":"related"}],"termid":"MONDO:0021183","xrefs":{"Monarch":{"xref_id":"0021183"}}}


id: PBO:0060155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 3 (pseudogene)","termid":"PBO:0060155"}


id: PBO:0067354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 452, pseudogene","termid":"PBO:0067354"}


id: PBO:0052692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 16","termid":"PBO:0052692"}


id: MONDO:0023530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypertensive disorder","termid":"MONDO:0005044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein hypertension","secondary_identifiers":["MESH:C537707","HGNC:6357","MEDGEN:257936","UMLS:C1171349"],"synonyms":[{"name":"kallikrein attenuated hypertension","type":"related"}],"termid":"MONDO:0023530","xrefs":{"Monarch":{"xref_id":"0023530"}}}


id: GO:0097647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by amylin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process.","definition_xrefs":["PMID:12037140","GOC:bhm","PMID:18687416","PMID:10871296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcitonin family receptor signaling pathway","termid":"GO:0097646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"amylin receptor signaling pathway","synonyms":[{"name":"amilyn receptor signalling pathway","type":"exact"}],"termid":"GO:0097647"}


id: PBO:0065362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoserine aminotransferase 1 pseudogene 3","termid":"PBO:0065362"}


id: GO:0032356
data:
  {"annotated_genes":["SJAG_02261"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75513],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032357"}]},"cv_name":"molecular_function","definition":"Binding to a DNA region containing an oxidized residue.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"damaged DNA binding","termid":"GO:0003684"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"oxidized DNA binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"oxidised DNA binding","type":"exact"}],"termid":"GO:0032356","terms_by_termid":{"GO:0032357":null}}


id: PBO:0000979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin family","termid":"PBO:0000979"}


id: PBO:0050989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFT74 antisense RNA 1","termid":"PBO:0050989"}


id: GO:0085025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Tat complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host morphology or physiology via protein secreted by Tat complex (obsolete GO:0085025)","synonyms":[{"name":"modification by symbiont of host morphology or physiology via protein secreted by the Tat secretion system","type":"exact"}],"termid":"GO:0085025"}


id: PBO:0117088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP3R1 and CNRIP1 antisense RNA 1","termid":"PBO:0117088"}


id: PATO:0002424
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions.","definition_xrefs":["PATOC:AD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent from","termid":"PATO:0002424"}


id: GO:0019889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pteridine metabolic process","synonyms":[{"name":"pteridine metabolism","type":"exact"}],"termid":"GO:0019889"}


id: PBO:0053943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1246","termid":"PBO:0053943"}


id: GO:0019149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chloro-D-alanine + H2O = pyruvate + chloride + NH3.","definition_xrefs":["EC:4.5.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"3-chloro-D-alanine dehydrochlorinase activity","secondary_identifiers":["MetaCyc:3-CHLORO-D-ALANINE-DEHYDROCHLORINASE-RXN","RHEA:18873"],"synonyms":[{"name":"3-chloro-D-alanine chloride-lyase (deaminating)","type":"related"},{"name":"3-chloro-D-alanine chloride-lyase (deaminating; pyruvate-forming)","type":"related"},{"name":"beta-chloro-D-alanine dehydrochlorinase activity","type":"related"}],"termid":"GO:0019149"}


id: _global:involved_in_negative_regulation_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c involved in regulation of p if c is involved in some p' and p' negatively regulates some p","direct_ancestors":[{"relation_name":"is_a","term_name":"involved_in_regulation_of","termid":"_global:involved_in_regulation_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"involved_in_negative_regulation_of","secondary_identifiers":["RO:0002430"],"termid":"_global:involved_in_negative_regulation_of"}


id: GO:0140300
data:
  {"annotated_genes":["SJAG_04588"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92624],"is_not":false,"summary":null,"term":"GO:0140300"}]},"cv_name":"biological_process","definition":"The process in which serine is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["PMID:30442778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"serine transport","termid":"GO:0032329"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"serine import into mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140300","terms_by_termid":{"GO:0140300":null}}


id: GO:0046085
data:
  {"annotated_genes":["SJAG_02959","SJAG_02582","SJAG_01070","SJAG_00044","SJAG_02580"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92553],"is_not":false,"summary":null,"term":"GO:0046085"},{"annotations":[90888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[89592,89593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006154"},{"annotations":[118899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside metabolic process","termid":"GO:0046128"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_01070":null,"SJAG_02580":null,"SJAG_02582":null,"SJAG_02959":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"adenosine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"adenosine metabolism","type":"exact"}],"termid":"GO:0046085","terms_by_termid":{"GO:0006154":null,"GO:0006169":null,"GO:0046085":null,"GO:0046086":null}}


id: PBO:0054194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1569","termid":"PBO:0054194"}


id: PBO:0053390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 317","termid":"PBO:0053390"}


id: PBO:0049424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 1","termid":"PBO:0049424"}


id: PBO:0061886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligodendrocytic myelin paranodal and inner loop protein","termid":"PBO:0061886"}


id: GO:0098967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The exocytic fusion of neurotransmitter receptor containing vesicles with the postsynaptic membrane resulting in the integration of NT receptors, enabling them to participate in neurotransmitter reception. This process includes tethering and docking steps that prepare vesicles for fusion.","definition_xrefs":["PMID:19503082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exocytosis","termid":"GO:0006887"},{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane neurotransmitter receptor levels","termid":"GO:0099072"},{"relation_name":"part_of","term_name":"neurotransmitter receptor transport to postsynaptic membrane","termid":"GO:0098969"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"exocytic insertion of neurotransmitter receptor to postsynaptic membrane","termid":"GO:0098967"}


id: FYPO:0004861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in the cell wall is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal galactomannan level","termid":"FYPO:0001079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal cell wall galactomannan level","synonyms":[{"name":"normal cell wall galactomannan accumulation","type":"related"},{"name":"normal cell wall galactomannan level during mitotic cell cycle","type":"related"},{"name":"normal cell wall galactomannan level during vegetative growth","type":"exact"}],"termid":"FYPO:0004861"}


id: PBO:0043179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliated left-right organizer metallopeptidase","termid":"PBO:0043179"}


id: GO:1901309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of sterol regulatory element binding protein cleavage.","definition_xrefs":["GOC:TermGenie","PMID:15899885","PMID:16525117"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of sterol regulatory element binding protein cleavage (obsolete GO:1901309)","synonyms":[{"name":"down regulation of SREBP cleavage","type":"exact"},{"name":"down regulation of sterol regulatory element binding protein cleavage","type":"exact"},{"name":"down-regulation of SREBP cleavage","type":"exact"},{"name":"down-regulation of sterol regulatory element binding protein cleavage","type":"exact"},{"name":"downregulation of SREBP cleavage","type":"exact"},{"name":"downregulation of sterol regulatory element binding protein cleavage","type":"exact"},{"name":"inhibition of SREBP cleavage","type":"exact"},{"name":"inhibition of SREBP processing","type":"exact"},{"name":"inhibition of sterol regulatory element binding protein cleavage","type":"narrow"},{"name":"negative regulation of SREBP cleavage","type":"exact"}],"termid":"GO:1901309"}


id: MONDO:0013217
data:
  {"annotated_genes":["SJAG_02894","SJAG_01366"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88273,88274],"is_not":false,"summary":null,"term":"MONDO:0013217"}]},"cv_name":"mondo","definition":"Any Diamond-Blackfan anemia in which the cause of the disease is a mutation in the RPS26 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01366":null,"SJAG_02894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 10","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15645","DOID:0111888","MESH:C567649","MEDGEN:412873","OMIM:613309","NCIT:C176919","UMLS:C2750080"],"synonyms":[{"name":"DBA10","type":"related"},{"name":"Diamond-Blackfan Anaemia type 10","type":"exact"},{"name":"Diamond-Blackfan Anemia type 10","type":"exact"},{"name":"Diamond-Blackfan anaemia caused by mutation in RPS26","type":"exact"},{"name":"Diamond-Blackfan anemia 10","type":"exact"},{"name":"Diamond-Blackfan anemia caused by mutation in RPS26","type":"exact"},{"name":"RPS26 Diamond-Blackfan anaemia","type":"exact"},{"name":"RPS26 Diamond-Blackfan anemia","type":"exact"}],"termid":"MONDO:0013217","terms_by_termid":{"MONDO:0013217":null},"xrefs":{"Monarch":{"xref_id":"0013217"}}}


id: PBO:0082367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR domain protein that localizes to early and late Golgi vesicles; required for adaptation to varying nutrient concentrations, fluid-phase endocytosis, polarization of the actin cytoskeleton, and vacuole biogenesis","termid":"PBO:0082367"}


id: GO:0036095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of invasive growth as a result of deprivation of glucose, by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:jh","PMID:14668363"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0036095)","synonyms":[{"name":"transcriptional activation of genes involved in invasive growth","type":"related"}],"termid":"GO:0036095"}


id: PBO:0077942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 2-2","termid":"PBO:0077942"}


id: MONDO:0007954
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete May-Hegglin anomaly (obsolete MONDO:0007954)","secondary_identifiers":["NANDO:2200654","NANDO:2100193","NANDO:2200127","NANDO:1200893"],"termid":"MONDO:0007954","xrefs":{"Monarch":{"xref_id":"0007954"}}}


id: MONDO:1012643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any von Willebrand disease that occurs in cats and is characterized by no detectable or a severe quantitative deficiency of the glycoprotein von Willebrand factor (vWF).","definition_xrefs":["OMIA:001058-9685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Von Willebrand disease, domestic cat","termid":"MONDO:1011613"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand disease III, domestic cat","termid":"MONDO:1012643","xrefs":{"Monarch":{"xref_id":"1012643"}}}


id: SO:0001736
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K9_methylation_site","synonyms":[{"name":"H3K9 methylation site","type":"exact"}],"termid":"SO:0001736"}


id: PBO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as pseudogene","termid":"PBO:0000145"}


id: MONDO:0014888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal dominant condition caused by mutation(s) in the SAMD9 gene, encoding sterile alpha motif domain-containing protein 9A. It is a syndromic condition comprising myelodysplasia, infection, restriction of growth, adrenal hypoplasia, genital abnormalities, and enteropathy.","definition_xrefs":["NCIT:C147530"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIRAGE syndrome","secondary_identifiers":["MEDGEN:924576","Orphanet:494433","OMIM:617053","GARD:13108","UMLS:C4284088"],"synonyms":[{"name":"MIRAGE","type":"exact"},{"name":"mirage","type":"exact"},{"name":"mirage syndrome","type":"exact"},{"name":"myelodysplasia, infection, restriction of Growth, adrenal Hypoplasia, genital phenotypes, and enteropathy","type":"exact"},{"name":"myelodysplasia-infection-restriction of growth-adrenal hypoplasia-genital anomalies-enteropathy syndrome","type":"exact"},{"name":"myelodysplasia-infection-restriction of growth-adrenal hypoplasia-genital phenotypes-enteropathy syndrome","type":"exact"}],"termid":"MONDO:0014888","xrefs":{"Monarch":{"xref_id":"0014888"}}}


id: PR:O13765
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lariat debranching enzyme that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12849:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lariat debranching enzyme (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.02c","secondary_identifiers":["UniProtKB:O13765"],"synonyms":[{"name":"SPAC17A5.02c","type":"related"},{"name":"Spom972h-DBR1","type":"exact"}],"termid":"PR:O13765"}


id: GO:0030251
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of guanylate cyclase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase inhibitor activity","termid":"GO:0010852"},{"relation_name":"is_a","term_name":"guanylate cyclase regulator activity","termid":"GO:0030249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0004857","GO:0003674","GO:0140678","GO:0098772","GO:0030234"],"is_obsolete":false,"name":"guanylate cyclase inhibitor activity","termid":"GO:0030251"}


id: MONDO:0032641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial congenital mirror movements","termid":"MONDO:0016558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"mirror movements 4","secondary_identifiers":["MEDGEN:1648342","GARD:16333","UMLS:C4748869","OMIM:618264"],"synonyms":[{"name":"MIRROR MOVEMENTS 4","type":"related"},{"name":"MRMV4","type":"related"}],"termid":"MONDO:0032641","xrefs":{"Monarch":{"xref_id":"0032641"}}}


id: MONDO:1011656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"facial dysplasia syndrome, non-human animal","secondary_identifiers":["OMIA:002090"],"termid":"MONDO:1011656","xrefs":{"Monarch":{"xref_id":"1011656"}}}


id: GO:0005351
data:
  {"annotated_genes":["SJAG_00057","SJAG_03608","SJAG_03606","SJAG_04905","SJAG_02958","SJAG_03820","SJAG_04068","SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72839,75032,75137,75148,76747,78225],"is_not":false,"summary":null,"term":"GO:0005351"},{"annotations":[119279],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"},{"annotations":[97779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[77609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: carbohydrate(out) + H+(out) = carbohydrate(in) + H+(in).","definition_xrefs":["TC:2.A.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:monoatomic cation symporter activity","termid":"GO:0005402"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_02958":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03820":null,"SJAG_03960":null,"SJAG_04068":null,"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"carbohydrate:proton symporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0005403","GO:0015542"],"synonyms":[{"name":"cation/sugar symporter activity","type":"narrow"},{"name":"hydrogen:sugar symporter activity","type":"narrow"},{"name":"hydrogen:sugar transporter activity","type":"broad"},{"name":"lactose/glucose efflux transporter activity","type":"narrow"},{"name":"proton:sugar symporter activity","type":"exact"},{"name":"sugar efflux transmembrane transporter activity","type":"narrow"},{"name":"sugar porter activity","type":"narrow"},{"name":"sugar transporter","type":"broad"},{"name":"sugar:hydrogen ion symporter activity","type":"narrow"},{"name":"sugar:hydrogen symporter activity","type":"exact"},{"name":"sugar:proton symporter activity","type":"narrow"}],"termid":"GO:0005351","terms_by_termid":{"GO:0005351":null,"GO:0005358":null,"GO:0005364":null,"GO:0008506":null}}


id: PBO:0045058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discs large MAGUK scaffold protein 1","termid":"PBO:0045058"}


id: MONDO:0025030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Highly contagious infectious dermatitis with lesions near the interdigital spaces usually in cattle. It causes discomfort and often severe lameness (lameness, animal). Lesions can be either erosive or proliferative and wart-like with papillary growths and hypertrophied hairs. dichelobacter nodosus and treponema are the most commonly associated causative agents for this mixed bacterial infection disease.","definition_xrefs":["MESH:D058066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection, non-human animal","termid":"MONDO:0700109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"digital dermatitis in cattle","synonyms":[{"name":"Dermatitides, bovine digital","type":"related"},{"name":"Dermatitides, digital","type":"related"},{"name":"Ovine digital Dermatitides","type":"related"},{"name":"Ovine digital dermatitis","type":"related"},{"name":"Papillomatoses, digital","type":"related"},{"name":"Warts, bovine foot","type":"related"},{"name":"bovine digital Dermatitides","type":"related"},{"name":"bovine digital dermatitis","type":"related"},{"name":"bovine foot Warts","type":"related"},{"name":"bovine foot wart","type":"related"},{"name":"bovine hairy footwart","type":"related"},{"name":"bovine hairy footwarts","type":"related"},{"name":"dermatitis, bovine digital","type":"related"},{"name":"dermatitis, digital","type":"related"},{"name":"digital Dermatitides","type":"related"},{"name":"digital Dermatitides, Ovine","type":"related"},{"name":"digital Dermatitides, bovine","type":"related"},{"name":"digital Dermatitides, papillomatous","type":"related"},{"name":"digital Papillomatoses","type":"related"},{"name":"digital dermatitis, Ovine","type":"related"},{"name":"digital dermatitis, bovine","type":"related"},{"name":"digital dermatitis, papillomatous","type":"related"},{"name":"digital papillomatosis","type":"related"},{"name":"foot Warts, bovine","type":"related"},{"name":"foot wart, bovine","type":"related"},{"name":"footwart, bovine hairy","type":"related"},{"name":"footwarts, bovine hairy","type":"related"},{"name":"hairy footwart, bovine","type":"related"},{"name":"hairy footwarts, bovine","type":"related"},{"name":"papillomatosis, digital","type":"related"},{"name":"papillomatous digital Dermatitides","type":"related"},{"name":"papillomatous digital dermatitis","type":"related"},{"name":"wart, bovine foot","type":"related"}],"termid":"MONDO:0025030","xrefs":{"Monarch":{"xref_id":"0025030"}}}


id: PBO:0054192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1567","termid":"PBO:0054192"}


id: GO:1900889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pentadecane biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pentadecane biosynthetic process","termid":"GO:1900887"},{"relation_name":"is_a","term_name":"positive regulation of pentadecane metabolic process","termid":"GO:1900892"},{"relation_name":"is_a","term_name":"positive regulation of alkane biosynthetic process","termid":"GO:1901579"},{"relation_name":"positively_regulates","term_name":"pentadecane biosynthetic process","termid":"GO:1900634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pentadecane biosynthetic process","synonyms":[{"name":"activation of pentadecane anabolism","type":"narrow"},{"name":"activation of pentadecane biosynthesis","type":"narrow"},{"name":"activation of pentadecane biosynthetic process","type":"narrow"},{"name":"activation of pentadecane formation","type":"narrow"},{"name":"activation of pentadecane synthesis","type":"narrow"},{"name":"positive regulation of pentadecane anabolism","type":"related"},{"name":"positive regulation of pentadecane biosynthesis","type":"related"},{"name":"positive regulation of pentadecane formation","type":"related"},{"name":"positive regulation of pentadecane synthesis","type":"related"},{"name":"up regulation of pentadecane anabolism","type":"related"},{"name":"up regulation of pentadecane biosynthesis","type":"related"},{"name":"up regulation of pentadecane biosynthetic process","type":"exact"},{"name":"up regulation of pentadecane formation","type":"related"},{"name":"up regulation of pentadecane synthesis","type":"related"},{"name":"up-regulation of pentadecane anabolism","type":"related"},{"name":"up-regulation of pentadecane biosynthesis","type":"related"},{"name":"up-regulation of pentadecane biosynthetic process","type":"exact"},{"name":"up-regulation of pentadecane formation","type":"related"},{"name":"up-regulation of pentadecane synthesis","type":"related"},{"name":"upregulation of pentadecane anabolism","type":"related"},{"name":"upregulation of pentadecane biosynthesis","type":"related"},{"name":"upregulation of pentadecane biosynthetic process","type":"exact"},{"name":"upregulation of pentadecane formation","type":"related"},{"name":"upregulation of pentadecane synthesis","type":"related"}],"termid":"GO:1900889"}


