# terms

id: MONDO:0008270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of preaxial polydactyly of fingers, a limb malformation syndrome, that is characterized by the presence of a usually opposable triphalangeal thumb with or without additional duplication of one or more skeletal components of the thumb. The thumb appearance can differ widely in shape (wedge to rectangular) or it can be deviated in the radio-ulnar plane (clinodactyly). PPD2 is also associated with systemic syndromes, including Holt-Oram syndrome and Fanconi anemia.","definition_xrefs":["Orphanet:93336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preaxial polydactyly of fingers","termid":"MONDO:0017425"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly of a triphalangeal thumb","secondary_identifiers":["icd11.foundation:728781925","UMLS:C1868114","GARD:5289","DOID:0060986","MEDGEN:357423","OMIM:174500","SCTID:715710001"],"synonyms":[{"name":"PPD2","type":"exact"},{"name":"TPT-PS syndrome","type":"related"},{"name":"polydactyly of triphalangeal thumb","type":"related"},{"name":"polydactyly, preaxial 2","type":"related"},{"name":"polydactyly, preaxial II","type":"related"},{"name":"polydactyly, preaxial type 2","type":"exact"},{"name":"polydactyly, preaxial type II","type":"exact"},{"name":"preaxial polydactyly type 2","type":"exact"},{"name":"triphalangeal thumb","type":"related"},{"name":"triphalangeal thumb with polysyndactyly","type":"related"},{"name":"triphalangeal thumb, type i","type":"exact"},{"name":"triphalangeal thumb-polydactyly syndrome","type":"related"},{"name":"triphalangeal thumb-polysyndactyly syndrome","type":"related"}],"termid":"MONDO:0008270","xrefs":{"Monarch":{"xref_id":"0008270"}}}


id: MOD:00127
data:
  {"annotated_genes":["SJAG_03641"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[82444],"is_not":false,"summary":null,"term":"MOD:00127"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-lipoyl-L-lysine.","definition_xrefs":["DeltaMass:0","PubMed:7719855","RESID:AA0118","PubMed:3421911","PubMed:3522581","Unimod:42#K","OMSSA:67"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03641":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"N6-lipoyl-L-lysine","references_by_uniquename":{"PMID:36408920":null},"synonyms":[{"name":"(2S)-2-amino-6-(5-[(3R)-1,2-dithiolan-3-yl]pentanamido)hexanoic acid","type":"exact"},{"name":"(2S)-2-amino-6-[(5-[(3R)-1,2-dithiolan-3-yl]pentanoyl)amino]hexanoic acid","type":"exact"},{"name":"(2S,6'R)-2-amino-6-(6,8-dithiooctanamido)hexanoic acid","type":"exact"},{"name":"2-amino-6-(5-[1,2-dithiolan-3-yl]-1-oxopentyl)aminohexanoic acid","type":"exact"},{"name":"Lipoyl","type":"related"},{"name":"MOD_RES N6-lipoyllysine","type":"exact"},{"name":"N-Lipoyl- (on Lysine)","type":"exact"},{"name":"N6-6,8-dithiooctanoyllysine","type":"exact"},{"name":"N6-lipoyl-L-lysine","type":"exact"},{"name":"N6-lipoyllysine","type":"exact"},{"name":"N6LipLys","type":"exact"},{"name":"lipoylk","type":"exact"}],"termid":"MOD:00127","terms_by_termid":{"MOD:00127":null}}


id: PBO:0074659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 48B","termid":"PBO:0074659"}


id: GO:0039007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the pronephric nephron are generated and organized. A pronephric nephron is the functional unit of the pronephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron morphogenesis","termid":"GO:0072028"},{"relation_name":"part_of","term_name":"pronephric nephron development","termid":"GO:0039019"},{"relation_name":"part_of","term_name":"pronephros morphogenesis","termid":"GO:0072114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephric nephron morphogenesis","termid":"GO:0039007"}


id: GO:1990502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Steps required to transform a dense core granule generated at the trans-Golgi network into a fully formed and transmissible dense core granule. Dense core granule maturation proceeds through clathrin-mediated membrane remodeling events and is essential for efficient processing of cargo within dense core granules as well as for removing factors that might otherwise interfere with dense core granule trafficking and exocytosis.","definition_xrefs":["GOC:kmv","PMID:22654674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule maturation","termid":"GO:0061792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dense core granule maturation","synonyms":[{"name":"dense core vesicle maturation","type":"exact"}],"termid":"GO:1990502"}


id: GO:0030735
data:
  {"annotated_genes":["SJAG_03087"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107183],"is_not":false,"summary":null,"term":"GO:0030735"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + carnosine = S-adenosyl-L-homocysteine + anserine + H+.","definition_xrefs":["EC:2.1.1.22","RHEA:14205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03087":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"carnosine N-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:CARNOSINE-N-METHYLTRANSFERASE-RXN","KEGG_REACTION:R02144","Reactome:R-HSA-8876789"],"synonyms":[{"name":"S-adenosyl-L-methionine:carnosine N-methyltransferase activity","type":"related"}],"termid":"GO:0030735","terms_by_termid":{"GO:0030735":null}}


id: GO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response mediated by lymphocytes expressing specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments encoding immunoglobulin superfamily domains. Recombined receptors for antigen encoded by immunoglobulin superfamily domains include T cell receptors and immunoglobulins (antibodies) produced by B cells. The first encounter with antigen elicits a primary immune response that is slow and not of great magnitude. T and B cells selected by antigen become activated and undergo clonal expansion. A fraction of antigen-reactive T and B cells become memory cells, whereas others differentiate into effector cells. The memory cells generated during the primary response enable a much faster and stronger secondary immune response upon subsequent exposures to the same antigen (immunological memory). An example of this is the adaptive immune response found in Mus musculus.","definition_xrefs":["GOC:mtg_sensu","ISBN:0781735149","GOC:add","ISBN:1405196831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adaptive immune response","termid":"GO:0002250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002460"}


id: PBO:0053063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linker for activation of T cells family member 2","termid":"PBO:0053063"}


id: MONDO:0007585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any exostoses, multiple in which the cause of the disease is a mutation in the EXT1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary multiple osteochondromas","termid":"MONDO:0005508"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exostoses, multiple, type 1","secondary_identifiers":["GARD:2204","OMIM:133700"],"synonyms":[{"name":"EXT","type":"related"},{"name":"EXT1 exostoses, multiple","type":"exact"},{"name":"diaphyseal Aclasis","type":"related"},{"name":"exostoses, multiple caused by mutation in EXT1","type":"exact"},{"name":"exostoses, multiple, type 1","type":"exact"},{"name":"exostoses, multiple, type I","type":"related"},{"name":"multiple cartilaginous exostoses","type":"related"},{"name":"multiple osteochondromas","type":"related"},{"name":"osteochondromatosis","type":"related"}],"termid":"MONDO:0007585","xrefs":{"Monarch":{"xref_id":"0007585"}}}


id: PBO:0003193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear membrane organization protein Apq12 (predicted)","termid":"PBO:0003193"}


id: PBO:0069803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1089, pseudogene","termid":"PBO:0069803"}


id: PBO:0000114
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.29","termid":"PBO:0000114"}


id: MONDO:0020852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 31","secondary_identifiers":["OMIM:618112","DOID:0111922","MEDGEN:1648419","UMLS:C4748234"],"synonyms":[{"name":"SPGF31","type":"exact"},{"name":"spermatogenic failure 31","type":"exact"}],"termid":"MONDO:0020852","xrefs":{"Monarch":{"xref_id":"0020852"}}}


id: PBO:0089102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15a","termid":"PBO:0089102"}


id: GO:0140748
data:
  {"annotated_genes":["SJAG_04666","SJAG_04771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89519,94430],"is_not":false,"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ascospore wall (1->3)-beta-D-glucan biosynthetic process.","definition_xrefs":["PMID:19189958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ascospore wall (1->3)-beta-D-glucan biosynthetic process","termid":"GO:0060624"},{"relation_name":"is_a","term_name":"positive regulation of (1->3)-beta-D-glucan biosynthetic process","termid":"GO:0060635"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"ascospore wall (1->3)-beta-D-glucan biosynthetic process","termid":"GO:0034413"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04666":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0005975","GO:0044085","GO:0071554","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of regulation of ascospore wall (1->3)-beta-D-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140748","terms_by_termid":{"GO:0140748":null}}


id: PBO:0031515
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_binding","termid":"PBO:0031515"}


id: MONDO:0011115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic paraplegia and Evans syndrome","secondary_identifiers":["MESH:C566652","OMIM:601608","MEDGEN:355764","UMLS:C1866619"],"synonyms":[{"name":"spastic paraplegia and Evans syndrome","type":"exact"}],"termid":"MONDO:0011115","xrefs":{"Monarch":{"xref_id":"0011115"}}}


id: MONDO:0021945
data:
  {"annotated_genes":["SJAG_01722","SJAG_02431","SJAG_04882","SJAG_00279","SJAG_01538","SJAG_00365","SJAG_05330","SJAG_04719","SJAG_01253","SJAG_01400","SJAG_05175","SJAG_00082","SJAG_03703","SJAG_02139","SJAG_00301","SJAG_01344","SJAG_04613","SJAG_05182","SJAG_03785","SJAG_04554","SJAG_00358","SJAG_03007","SJAG_04558","SJAG_03943","SJAG_04619","SJAG_01943","SJAG_04115","SJAG_01941","SJAG_00244","SJAG_00164","SJAG_02155","SJAG_03145","SJAG_02348","SJAG_02016","SJAG_05282","SJAG_05213","SJAG_04409","SJAG_03536","SJAG_03811","SJAG_00488","SJAG_01926","SJAG_04295","SJAG_02463","SJAG_04706","SJAG_04703","SJAG_03088","SJAG_04856"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87302],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012196"},{"annotations":[87318,87317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007424"},{"annotations":[87530,87529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011350"},{"annotations":[87832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011480"},{"annotations":[87483,87481,87484,87482,87485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011568"},{"annotations":[87259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014603"},{"annotations":[88735,88734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010915"},{"annotations":[87240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014594"},{"annotations":[87612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014853"},{"annotations":[89333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011067"},{"annotations":[88603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012091"},{"annotations":[87300,87301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010933"},{"annotations":[88746,88747],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013471"},{"annotations":[89030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013386"},{"annotations":[87784,87785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014237"},{"annotations":[88712,88713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013489"},{"annotations":[86990,89271],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010799"},{"annotations":[88762],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0027048"},{"annotations":[87333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033258"},{"annotations":[88688,88687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032911"},{"annotations":[88696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032917"},{"annotations":[87329,87330,87328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030058"},{"annotations":[87748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033668"},{"annotations":[89086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030719"},{"annotations":[88566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859524"},{"annotations":[88563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859525"},{"annotations":[89121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032740"},{"annotations":[87361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033199"},{"annotations":[88236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032639"},{"annotations":[89151],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032761"},{"annotations":[89154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032762"},{"annotations":[89126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958277"},{"annotations":[89131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032749"},{"annotations":[87363,87362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010577"},{"annotations":[87812,87813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009479"},{"annotations":[89186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010378"}]},"cv_name":"mondo","definition":"A disorder characterized by the partial or complete loss of the ability to detect sounds due to damage to the ear structures or inability of the brain to properly interpret or process the auditory signals it receives from the anatomic structures of the ear.","definition_xrefs":["NCIT:C3078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory system disorder","termid":"MONDO:0002409"},{"relation_name":"is_a","term_name":"perceptual 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disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D006311","UMLS:C0260662","MEDGEN:82636","SCTID:128540005"],"synonyms":[{"name":"auditory alteration","type":"related"},{"name":"disorder of hearing","type":"related"},{"name":"hearing 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id: PBO:0085764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase of unknown cellular role; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0085764"}


id: PBO:0004086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human KIN ortholog (predicted)","termid":"PBO:0004086"}


id: MONDO:0009991
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Rh deficiency syndrome (obsolete MONDO:0009991)","termid":"MONDO:0009991","xrefs":{"Monarch":{"xref_id":"0009991"}}}


id: GO:0071341
data:
  {"annotated_genes":["SJAG_00773","SJAG_04498","SJAG_02169","SJAG_01889","SJAG_01665","SJAG_05290","SJAG_02368","SJAG_01456","SJAG_03596","SJAG_00279","SJAG_00228","SJAG_03602","SJAG_03564","SJAG_01143","SJAG_03703","SJAG_04280","SJAG_00807","SJAG_04486"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90277,90959,92724,94329,94593,95870,98335,100034,102716,103279,107204,108227,119094,119934],"is_not":false,"summary":null,"term":"GO:0071341"},{"annotations":[105496,100434,101008,118060],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110115"}]},"cv_name":"cellular_component","definition":"A component of the cell division site that contains the mid1, cdr2, wee1, klp8, and blt1 proteins, and is involved in contractile ring localization. Medial cortical node complexes appear as cortical dots in the middle of the cell during interphase, and function to recruit other ring components in early mitosis.","definition_xrefs":["GOC:mah","PMID:19474789","GOC:vw","PMID:19959363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"medial cortex","termid":"GO:0031097"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00228":null,"SJAG_00279":null,"SJAG_00773":null,"SJAG_00807":null,"SJAG_01143":null,"SJAG_01456":null,"SJAG_01665":null,"SJAG_01889":null,"SJAG_02169":null,"SJAG_02368":null,"SJAG_03564":null,"SJAG_03596":null,"SJAG_03602":null,"SJAG_03703":null,"SJAG_04280":null,"SJAG_04486":null,"SJAG_04498":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005938"],"is_obsolete":false,"name":"medial cortical node","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mid1p medial cortical dot","type":"exact"},{"name":"midsome","type":"exact"}],"termid":"GO:0071341","terms_by_termid":{"GO:0071341":null,"GO:0110115":null}}


id: PR:O59758
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mmt1 gene.","definition_xrefs":["UniProtKB:O59758","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized metal transporter C1020.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.03","synonyms":[{"name":"Spom972h-mmt1","type":"exact"}],"termid":"PR:O59758"}


id: PBO:0044856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin theta 1, pseudogene","termid":"PBO:0044856"}


id: GO:0072651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-tau due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","PMID:15546383","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interferon-tau production","secondary_identifiers":["GO:0072652"],"synonyms":[{"name":"IFN-tau production","type":"exact"},{"name":"IFN-tau secretion","type":"exact"},{"name":"IFNT production","type":"exact"},{"name":"interferon-tau secretion","type":"narrow"}],"termid":"GO:0072651"}


id: PBO:0083443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified, essential ORF ERG27/YLR100W","termid":"PBO:0083443"}


id: GO:1901463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"regulates","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"regulation of tetrapyrrole biosynthetic process","synonyms":[{"name":"regulation of tetrapyrrole anabolism","type":"exact"},{"name":"regulation of tetrapyrrole biosynthesis","type":"exact"},{"name":"regulation of tetrapyrrole formation","type":"exact"},{"name":"regulation of tetrapyrrole synthesis","type":"exact"}],"termid":"GO:1901463"}


id: PBO:0070708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 13","termid":"PBO:0070708"}


id: MONDO:0003925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from the ciliated respiratory mucosa that lines the ethmoid sinus. It results from the invagination and proliferation of epithelial cells in the underlying stroma.","definition_xrefs":["NCIT:C6843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inverted papilloma","termid":"MONDO:0002537"},{"relation_name":"is_a","term_name":"ethmoid sinus Schneiderian papilloma","termid":"MONDO:0003923"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethmoid sinus inverted papilloma","secondary_identifiers":["DOID:6562","UMLS:C1333474","MEDGEN:232472"],"synonyms":[{"name":"ethmoid sinus inverted papilloma","type":"exact"},{"name":"inverted papilloma of ethmoid sinus","type":"exact"},{"name":"inverted papilloma of the ethmoid sinus","type":"exact"}],"termid":"MONDO:0003925","xrefs":{"Monarch":{"xref_id":"0003925"}}}


id: PBO:0067493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 628, pseudogene","termid":"PBO:0067493"}


id: PBO:0080052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 24","termid":"PBO:0080052"}


id: PBO:0089788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis WD repeat WDR12/Ytm1 protein","termid":"PBO:0089788"}


id: PBO:0090696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homocysteine methyltransferase","termid":"PBO:0090696"}


id: MONDO:0007725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary progressive mucinous histiocytosis is a rare, benign, non-Langerhans cell histiocytosis characterized by childhood or adolescence onset of multiple, small, asymptomatic, slowly progressing, skin-colored to red-brown papules with predilection for the face, dorsal hands, forearms and legs, without associated mucosal or visceral involvement. Histologically, papules are well-circumscribed, unencapsulated, nodular aggregates of histiocytes with abundant mucin in the upper and middermis.","definition_xrefs":["Orphanet:158025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-Langerhans cell histiocytosis","termid":"MONDO:0015531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"hereditary progressive mucinous histiocytosis","secondary_identifiers":["MEDGEN:326771","OMIM:142630","icd11.foundation:284196883","MESH:C564186","UMLS:C1840586","GARD:16989"],"synonyms":[{"name":"histiocytosis, progressive mucinous","type":"related"}],"termid":"MONDO:0007725","xrefs":{"Monarch":{"xref_id":"0007725"}}}


id: PBO:0025500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein, CENP-K ortholog Sim4","termid":"PBO:0025500"}


id: FYPO:0007329
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of DNA damage measured at transfer RNA genes in a cell is greater than normal. The number, extent, or both of damage sites may be increased.","definition_xrefs":["PMID:31833215","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased DNA damage during vegetative growth","termid":"FYPO:0003547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"increased DNA damage at tRNA genes","synonyms":[{"name":"increased DNA damage at tRNA genes during mitotic cell cycle","type":"related"},{"name":"increased DNA damage at tRNA genes during vegetative growth","type":"exact"},{"name":"increased DNA damage at transfer RNA genes","type":"exact"},{"name":"increased number of DNA lesions at tRNA genes during vegetative growth","type":"related"}],"termid":"FYPO:0007329"}


id: GO:0005894
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-3 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-5.","definition_xrefs":["PMID:11839579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interleukin-3 receptor complex","synonyms":[{"name":"IL-3 receptor complex","type":"exact"}],"termid":"GO:0005894"}


id: PBO:0087778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit VIa of cytochrome c oxidase; present in a subclass of cytochrome c oxidase complexes that may have a role in mimimizing generation of reactive oxygen species; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP; required for assembly of Rcf2p into cytochrome c oxidase - cytochrome bc1 supercomplexes","termid":"PBO:0087778"}


id: GO:0009219
data:
  {"annotated_genes":["SJAG_03771","SJAG_02874","SJAG_04665","SJAG_00885","SJAG_04627","SJAG_04487","SJAG_04657"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94447,97501,109289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[72994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[81410,71864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[70433,72995,94448],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[72993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[71863,81433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[81434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pyrimidine deoxynucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide metabolic process","termid":"GO:0006220"},{"relation_name":"is_a","term_name":"2'-deoxyribonucleotide metabolic process","termid":"GO:0009394"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_03771":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleotide metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine deoxyribonucleotide metabolism","type":"exact"}],"termid":"GO:0009219","terms_by_termid":{"GO:0006226":null,"GO:0006227":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0046081":null}}


id: PBO:0060378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin regulatory factor","termid":"PBO:0060378"}


id: PBO:0058125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4427","termid":"PBO:0058125"}


id: GO:0062189
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + O2 + reduced [NADPH--hemoprotein reductase] = H+ + H2O + N-(14,15-epoxy-5Z,8Z,11Z-eicosatrienoyl)-ethanolamine + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["PMID:21289075","RHEA:53148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anandamide epoxidase activity","termid":"GO:0062186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"anandamide 14,15 epoxidase activity","termid":"GO:0062189"}


id: PBO:0055488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2922","termid":"PBO:0055488"}


id: PBO:0066890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 190","termid":"PBO:0066890"}


id: PBO:0048396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 2 like 2","termid":"PBO:0048396"}


id: PBO:0062721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily S member 1","termid":"PBO:0062721"}


id: GO:0018063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of cytochromes and other heme proteins to heme.","definition_xrefs":["RESID:AA0134","RESID:AA0135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-heme linkage","termid":"GO:0017003"},{"relation_name":"is_a","term_name":"cytochrome complex assembly","termid":"GO:0017004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"cytochrome c-heme linkage","synonyms":[{"name":"cytochrome c-haem linkage","type":"exact"}],"termid":"GO:0018063"}


id: PATO:0002163
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protruding into","termid":"PATO:0001645"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herniated into","termid":"PATO:0002163"}


id: FYPO:0001315
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure indistinguishable from wild type) when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell morphology","termid":"FYPO:0000672"},{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"},{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal vegetative cell morphology","synonyms":[{"name":"normal cell morphology during vegetative growth","type":"exact"},{"name":"normal vegetative cell morphology during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001315"}


id: MONDO:0001430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal neovascularization","termid":"MONDO:0006713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"deep corneal vascularisation","secondary_identifiers":["UMLS:C0155095","ICD9:370.63","ICD10CM:H16.44","DOID:12087","SCTID:2102007","MEDGEN:509784"],"synonyms":[{"name":"deep vascularization of cornea","type":"exact"}],"termid":"MONDO:0001430","xrefs":{"Monarch":{"xref_id":"0001430"}}}


id: PR:Q09721
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC31A2.10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C31A2.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.10","synonyms":[{"name":"Spom972h-SPAC31A2.10","type":"exact"}],"termid":"PR:Q09721"}


id: PBO:0055060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2476","termid":"PBO:0055060"}


id: PBO:0067992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 294","termid":"PBO:0067992"}


id: PR:O13622
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mss116 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase mss116, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC691.04","synonyms":[{"name":"Spom972h-mss116","type":"exact"}],"termid":"PR:O13622"}


id: RO:0002003
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that holds between two neurons that are electrically coupled via gap junctions.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_neural_circuit_with","termid":"RO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electrically_synapsed_to","termid":"RO:0002003"}


id: PBO:0061165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Leu (TAA) 3-1","termid":"PBO:0061165"}


id: PBO:0047323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAU pseudogene 1","termid":"PBO:0047323"}


id: PBO:0120901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase associated subunit FA4L3","termid":"PBO:0120901"}


id: GO:0046301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-chloro-N-isopropylacetanilide biosynthetic process (obsolete GO:0046301)","synonyms":[{"name":"2-chloro-N-isopropylacetanilide anabolism","type":"exact"},{"name":"2-chloro-N-isopropylacetanilide biosynthesis","type":"exact"},{"name":"2-chloro-N-isopropylacetanilide biosynthetic process","type":"exact"},{"name":"2-chloro-N-isopropylacetanilide formation","type":"exact"},{"name":"2-chloro-N-isopropylacetanilide synthesis","type":"exact"}],"termid":"GO:0046301"}


id: GO:0001174
data:
  {"annotated_genes":["SJAG_01523"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79216],"is_not":false,"summary":null,"term":"GO:0001174"}]},"cv_name":"biological_process","definition":"Any process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.","definition_xrefs":["PMID:18846104","PMID:16826228","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcriptional start site selection","termid":"GO:0001173"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase II promoter","termid":"GO:0006367"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01523":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"transcriptional start site selection at RNA polymerase II promoter","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0001174","terms_by_termid":{"GO:0001174":null}}


id: FYPO:0000918
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of citrate (Si)-synthase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal citrate (Si)-synthase activity","termid":"FYPO:0000917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"decreased citrate (Si)-synthase activity","synonyms":[{"name":"decreased citrate synthase activity","type":"broad"},{"name":"reduced citrate (Si)-synthase activity","type":"exact"}],"termid":"FYPO:0000918"}


id: FYPO:0004582
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell cycle arrest in response to nitrogen starvation occurs in G1 phase, but its occurrence is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle arrest in mitotic G1 phase during nitrogen starvation","termid":"FYPO:0001000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0000257","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased cell cycle arrest in mitotic G1 phase in response to nitrogen starvation","synonyms":[{"name":"increased cell cycle arrest in mitotic G1 phase during cellular response to nitrogen starvation","type":"exact"},{"name":"increased cell cycle arrest in mitotic G1 phase in response to nitrogen depletion","type":"exact"},{"name":"increased cell cycle arrest in mitotic G1 phase in response to nitrogen deprivation","type":"exact"},{"name":"increased mitotic G1 arrest in response to nitrogen starvation","type":"exact"},{"name":"increased mitotic cell cycle arrest in G1 phase in response to nitrogen starvation","type":"exact"},{"name":"increased nitrogen deprivation-induced G1 arrest","type":"exact"}],"termid":"FYPO:0004582"}


id: PR:Q9HFR0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A COP9 signalosome complex subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00512","PANTHER:PTHR10678:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome complex subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.04c","secondary_identifiers":["UniProtKB:Q9HFR0"],"synonyms":[{"name":"CSN complex subunit 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SGN2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COPS2","type":"exact"}],"termid":"PR:Q9HFR0"}


id: PBO:0011083
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein substrate Km, ATP Km 1.9 mM","termid":"PBO:0011083"}


id: GO:0052408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving cellulose in the cell wall of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by host of symbiont cell wall cellulose (obsolete GO:0052408)","termid":"GO:0052408"}


id: GO:0033867
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + Fas-activated serine/threonine protein = ADP + Fas-activated serine/threonine phosphoprotein.","definition_xrefs":["EC:2.7.11.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016301","GO:0016740","GO:0004672","GO:0140096"],"is_obsolete":false,"name":"Fas-activated serine/threonine kinase activity","secondary_identifiers":["MetaCyc:2.7.11.8-RXN"],"synonyms":[{"name":"ATP:Fas-activated serine/threonine protein phosphotransferase activity","type":"related"},{"name":"FAST","type":"related"},{"name":"FASTK","type":"related"},{"name":"STK10","type":"related"}],"termid":"GO:0033867"}


id: GO:0097622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The successive addition of amino acid residues to a nascent polypeptide chain, proceeding through regions of multiple repeated proline codons, during protein biosynthesis in the cytoplasm.","definition_xrefs":["GOC:mcc","PMID:24923804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic translational elongation","termid":"GO:0002182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0002181","GO:0010467"],"is_obsolete":false,"name":"cytoplasmic translational elongation through polyproline stretches","termid":"GO:0097622"}


id: MONDO:0007640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare progressive autosomal dominant macular dystrophy, presenting between the third and sixth decades of life, characterized by retinal atrophy and retinal detachment and leading to loss of central vision, then peripheral vision, and eventually blindness.","definition_xrefs":["Orphanet:59181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Sorsby fundus dystrophy","secondary_identifiers":["MEDGEN:338164","OMIM:136900","DOID:0090114","icd11.foundation:796458172","MESH:C564992","UMLS:C1850938","GARD:16480","SCTID:193410003"],"synonyms":[{"name":"SFD","type":"exact"},{"name":"Sorsby fundus dystrophy","type":"exact"},{"name":"Sorsby pseudoinflammatory fundus dystrophy","type":"related"},{"name":"Sorsby's fundus dystrophy","type":"exact"},{"name":"Sorsby's pseudoinflammatory macular dystrophy","type":"related"},{"name":"fundus dystrophy, pseudoinflammatory, of Sorsby","type":"related"},{"name":"hemorrhagic macular dystrophy","type":"exact"},{"name":"macular dystrophy, hemorrhagic","type":"related"},{"name":"pseudoinflammatory fundus dystrophy of Sorsby","type":"exact"}],"termid":"MONDO:0007640","xrefs":{"Monarch":{"xref_id":"0007640"}}}


id: PBO:0077689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNFAIP3 interacting protein 1","termid":"PBO:0077689"}


id: MONDO:0015796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition of lung damage that is characterized by bilateral pulmonary infiltrates (pulmonary edema) rich in neutrophils, and in the absence of clinical heart failure. This can represent a spectrum of pulmonary lesions, endothelial and epithelial, due to numerous factors (physical, chemical, or biological).","definition_xrefs":["MESH:D055371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"},{"relation_name":"is_a","term_name":"injury","termid":"MONDO:0021178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute lung injury","secondary_identifiers":["SCTID:315345002","Orphanet:178320","EFO:0004610","NCIT:C155766","GARD:20146","MedDRA:10069351"],"termid":"MONDO:0015796","xrefs":{"Monarch":{"xref_id":"0015796"}}}


id: GO:0033956
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7-[beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranosyloxy]isoflavonoid + H2O = a 7-hydroxyisoflavonoid + beta-D-apiofuranosyl-(1->6)-D-glucose.","definition_xrefs":["EC:3.2.1.161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"beta-apiosyl-beta-glucosidase activity","secondary_identifiers":["MetaCyc:RXN-9156","RHEA:21488"],"synonyms":[{"name":"7-[beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranosyloxy]isoflavonoid beta-D-apiofuranosyl-(1->6)-D-glucohydrolase activity","type":"related"},{"name":"furcatin hydrolase activity","type":"related"},{"name":"isoflavonoid 7-O-beta-apiosyl-glucoside beta-glucosidase activity","type":"related"},{"name":"isoflavonoid-7-O-beta[D-apiosyl-(1->6)-beta-D-glucoside] disaccharidase activity","type":"related"}],"termid":"GO:0033956"}


id: PBO:0027414
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_m7G(5')pppN_diphosphatase_activity","termid":"PBO:0027414"}


id: PBO:0002325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine kinase Mak2","termid":"PBO:0002325"}


id: GO:0018868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving 2-aminobenzenesulfonate, aniline-o-sulfonic acid, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-aminobenzenesulfonate metabolic process (obsolete GO:0018868)","synonyms":[{"name":"2-aminobenzenesulfonate metabolism","type":"exact"},{"name":"2-aminobenzenesulphonate metabolic process","type":"exact"},{"name":"2-aminobenzenesulphonate metabolism","type":"exact"}],"termid":"GO:0018868"}


id: FYPO:0000380
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which macroautophagy does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal macroautophagy","termid":"FYPO:0000163"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished macroautophagy","synonyms":[{"name":"abolished autophagy","type":"broad"},{"name":"absent macroautophagy","type":"exact"},{"name":"autophagy: absent","type":"broad"},{"name":"macroautophagy abolished","type":"exact"}],"termid":"FYPO:0000380"}


id: MONDO:0004882
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A angioid streaks that involves the optic choroid.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choroidal sclerosis","termid":"MONDO:0004885"},{"relation_name":"is_a","term_name":"angioid streaks","termid":"MONDO:0011782"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005559"],"is_obsolete":false,"name":"angioid streaks of choroid","secondary_identifiers":["SCTID:86103006","DOID:979","ICD9:363.43","MEDGEN:507444","UMLS:C0002983"],"synonyms":[{"name":"angioid streaks of optic choroid","type":"exact"},{"name":"optic choroid angioid streaks","type":"exact"}],"termid":"MONDO:0004882","xrefs":{"Monarch":{"xref_id":"0004882"}}}


id: PBO:0049571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 8","termid":"PBO:0049571"}


id: MONDO:0012554
data:
  {"annotated_genes":["SJAG_02828"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87662],"is_not":false,"summary":null,"term":"MONDO:0012554"}]},"cv_name":"mondo","definition":"Any COFS syndrome in which the cause of the disease is a mutation in the ERCC1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"COFS syndrome","termid":"MONDO:0008926"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02828":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0006025","MONDO:0021190"],"is_obsolete":false,"name":"cerebrooculofacioskeletal syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C173104","UMLS:C1853100","MEDGEN:342798","GARD:15498","MESH:C565184","DOID:0080914","OMIM:610758"],"synonyms":[{"name":"COFS syndrome caused by mutation in ERCC1","type":"exact"},{"name":"COFS4","type":"exact"},{"name":"ERCC1 COFS syndrome","type":"exact"},{"name":"cerebrooculofacioskeletal syndrome 4","type":"exact"},{"name":"cerebrooculofacioskeletal syndrome type 4","type":"exact"}],"termid":"MONDO:0012554","terms_by_termid":{"MONDO:0012554":null},"xrefs":{"Monarch":{"xref_id":"0012554"}}}


id: GO:1904361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of spore germination.","definition_xrefs":["GOC:TermGenie","PMID:8798577","PMID:14718564","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of spore germination","termid":"GO:1904359"},{"relation_name":"positively_regulates","term_name":"spore germination","termid":"GO:0009847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of spore germination","secondary_identifiers":["GO:0075007"],"synonyms":[{"name":"activation of spore germination","type":"narrow"},{"name":"positive regulation of spore germination on or near host","type":"narrow"},{"name":"up regulation of spore germination","type":"exact"},{"name":"up-regulation of spore germination","type":"exact"},{"name":"upregulation of spore germination","type":"exact"}],"termid":"GO:1904361"}


id: GO:0007147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the second meiotic division occurs in the female germline.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis II","termid":"GO:0007135"},{"relation_name":"is_a","term_name":"female meiotic nuclear division","termid":"GO:0007143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0140013"],"is_obsolete":false,"name":"female meiosis II","synonyms":[{"name":"female meiosis II nuclear division","type":"exact"}],"termid":"GO:0007147"}


id: MOD:01046
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 3'-chloro-L-tyrosine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monochlorinated L-tyrosine","termid":"MOD:01028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-chloro-L-tyrosine","synonyms":[{"name":"3'-ClTyr","type":"exact"}],"termid":"MOD:01046"}


id: PBO:0077708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"troponin T1, slow skeletal type","termid":"PBO:0077708"}


id: MONDO:0010938
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe combined immunodeficiency (SCID) T-B+ due to JAK3 deficiency is a form of SCID characterized by severe and recurrent infections, associated with diarrhea and failure to thrive.","definition_xrefs":["Orphanet:35078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial severe combined immunodeficiency","termid":"MONDO:0031520"},{"relation_name":"is_a","term_name":"T-B+ severe combined immunodeficiency","termid":"MONDO:0044200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-B+ severe combined immunodeficiency due to JAK3 deficiency","secondary_identifiers":["OMIM:600802","MEDGEN:331474","SCTID:718107000","GARD:16632","UMLS:C1833275","MESH:C563440"],"synonyms":[{"name":"SCID, T cell-negative, B cell-positive, NK cell-negative","type":"related"},{"name":"SCID, autosomal recessive, T-negative/B-positive type","type":"exact"},{"name":"T-B+ SCID due to JAK3 deficiency","type":"exact"},{"name":"T-B+ severe combined immunodeficiency due to JAK3 deficiency","type":"exact"},{"name":"T-cell negative B-cell positive severe combined immunodeficiency due to JAK3 deficiency","type":"exact"},{"name":"severe combined immunodeficiency T-cell negative B-cell positive due to janus kinase-3 deficiency","type":"related"},{"name":"severe combined immunodeficiency, autosomal recessive, T cell-NEGATIVE, B cell-POSITIVE, NK cell-NEGATIVE","type":"related"}],"termid":"MONDO:0010938","xrefs":{"Monarch":{"xref_id":"0010938"}}}


id: MONDO:0975846
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"congenital disorder of glycosylation, type 1DD","secondary_identifiers":["OMIM:301133"],"termid":"MONDO:0975846","xrefs":{"Monarch":{"xref_id":"0975846"}}}


id: PBO:0050843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibitor of Bruton tyrosine kinase","termid":"PBO:0050843"}


id: PBO:0050828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxylysine kinase","termid":"PBO:0050828"}


id: PBO:0035718
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_nucleosome-depleted_regions","termid":"PBO:0035718"}


id: MONDO:0012209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Branchiogenic deafness syndrome is a multiple congenital anomalies syndrome, described in one family to date, characterized by branchial cysts or fistulae; ear malformations; congenital hearing loss (conductive, sensorineural, and mixed); internal auditory canal hypoplasia; strabismus; trismus; abnormal fifth fingers; vitiliginous lesions, short stature; and mild learning disability. Renal and uretral abnormalities are absent.","definition_xrefs":["Orphanet:50815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branchiogenic deafness syndrome","secondary_identifiers":["GARD:16648","OMIM:609166","SCTID:717944002","UMLS:C1836673","MEDGEN:322970","MESH:C563780"],"synonyms":[{"name":"BRANCHIOGENIC-deafness syndrome","type":"related"},{"name":"MC)garbanC)-Loiselet syndrome","type":"exact"},{"name":"Mégarbané-Loiselet syndrome","type":"exact"}],"termid":"MONDO:0012209","xrefs":{"Monarch":{"xref_id":"0012209"}}}


id: PBO:0051596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 22","termid":"PBO:0051596"}


id: PBO:0040107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acylsphingosine amidohydrolase 2","termid":"PBO:0040107"}


id: PBO:0038869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase tRNA specific 3","termid":"PBO:0038869"}


id: PBO:0065282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich and Gla domain 2","termid":"PBO:0065282"}


id: PBO:0002751
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Niemann-Pick disease","termid":"PBO:0002751"}


id: GO:0021677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to rhombomere 8. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GO_REF:0000021","GOC:curators","GOC:cls","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere formation","termid":"GO:0021594"},{"relation_name":"part_of","term_name":"rhombomere 8 morphogenesis","termid":"GO:0021674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 8 formation","termid":"GO:0021677"}


id: PBO:0052379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 21B","termid":"PBO:0052379"}


id: PBO:0085738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in transcription initiation; acts at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p; protein abundance increases in response to DNA replication stress; BDF2 has a paralog, BDF1, that arose from the whole genome duplication","termid":"PBO:0085738"}


id: PBO:0060336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VB pseudogene 1","termid":"PBO:0060336"}


id: PBO:0067170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 223, pseudogene","termid":"PBO:0067170"}


id: PBO:0016533
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by canine rab5","termid":"PBO:0016533"}


id: GO:0014721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The twitch skeletal muscle responds to neurostimulations with a contraction followed by a relaxation.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voluntary skeletal muscle contraction","termid":"GO:0003010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"twitch skeletal muscle contraction","termid":"GO:0014721"}


id: PBO:0048513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor 2","termid":"PBO:0048513"}


id: PBO:0070746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 2","termid":"PBO:0070746"}


id: GO:2000185
data:
  {"annotated_genes":["SJAG_04990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101406],"is_not":false,"summary":null,"term":"GO:2000185"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphate transmembrane transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphate transport","termid":"GO:0010966"},{"relation_name":"is_a","term_name":"regulation of inorganic anion transmembrane transport","termid":"GO:1903795"},{"relation_name":"regulates","term_name":"phosphate ion transmembrane transport","termid":"GO:0035435"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of phosphate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of phosphate membrane transport","type":"exact"}],"termid":"GO:2000185","terms_by_termid":{"GO:2000185":null}}


id: MONDO:0020753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infectious disease causes by viruses in the subfamily Orthocoronavirinae (coronaviruses). In humans, coronaviruses cause respiratory tract infections that can be mild, such as some cases of the common cold (among other possible causes, predominantly rhinoviruses), and others that can be lethal, such as SARS, MERS, and COVID-19.","definition_xrefs":["Wikipedia:Coronavirus"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Coronaviridae infectious disease","termid":"MONDO:0005718"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Orthocoronavirinae infectious disease","secondary_identifiers":["DOID:0080599"],"synonyms":[{"name":"coronavirus infectious disease","type":"exact"}],"termid":"MONDO:0020753","xrefs":{"Monarch":{"xref_id":"0020753"}}}


id: PBO:0031394
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_arginine","termid":"PBO:0031394"}


id: _global:causally_upstream_of,_negative_effect
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of","termid":"_global:causally_upstream_of"},{"relation_name":"is_a","term_name":"causally_upstream_of_or_within,_negative_effect","termid":"_global:causally_upstream_of_or_within,_negative_effect"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of,_negative_effect","secondary_identifiers":["RO:0002305"],"termid":"_global:causally_upstream_of,_negative_effect"}


id: PBO:0027797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_tetraplatin","termid":"PBO:0027797"}


id: PBO:0062003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily H member 2","termid":"PBO:0062003"}


id: MOD:02000
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-retinylidene-L-lysine (unspecified geometric isomer).","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-retinylidene-L-lysine (unspecified geometric isomer)","synonyms":[{"name":"(2S)-2-amino-6-[3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)-2,4,6,8-nonatetraenylidene]aminohexanoic acid","type":"exact"}],"termid":"MOD:02000"}


id: PR:Q9P6L2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- set13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6L2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal lysine N-methyltransferase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC688.14","synonyms":[{"name":"SET domain-containing protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-set13","type":"exact"}],"termid":"PR:Q9P6L2"}


id: PBO:0002714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase type 2A, intrinsic regulator (predicted)","termid":"PBO:0002714"}


id: GO:0042823
data:
  {"annotated_genes":["SJAG_00283","SJAG_00691","SJAG_01383","SJAG_00252","SJAG_01881","SJAG_00707"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65444,77541],"is_not":false,"summary":null,"term":"GO:0042823"},{"annotations":[94828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036001"},{"annotations":[80171,77183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[113878],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin B6 biosynthetic process","termid":"GO:0042819"},{"relation_name":"is_a","term_name":"pyridoxal phosphate metabolic process","termid":"GO:0042822"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00252":null,"SJAG_00283":null,"SJAG_00691":null,"SJAG_00707":null,"SJAG_01383":null,"SJAG_01881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0008150","GO:0006766","GO:0044281"],"is_obsolete":false,"name":"pyridoxal phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["MetaCyc:PWY0-845"],"synonyms":[{"name":"active vitamin B6 biosynthesis","type":"exact"},{"name":"active vitamin B6 biosynthetic process","type":"exact"},{"name":"pyridoxal phosphate anabolism","type":"exact"},{"name":"pyridoxal phosphate biosynthesis","type":"exact"},{"name":"pyridoxal phosphate formation","type":"exact"},{"name":"pyridoxal phosphate synthesis","type":"exact"}],"termid":"GO:0042823","terms_by_termid":{"GO:0009443":null,"GO:0010144":null,"GO:0036001":null,"GO:0042823":null}}


id: MONDO:0018304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, underdiagnosed disorder in adults characterized by recurrent febrile rash, bone and/or joint pain, enlarged lymph nodes, fatigue, a monoclonal IgM component, leukocytosis and systemic inflammatory response.","definition_xrefs":["Orphanet:37748"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type IV hypersensitivity disease","termid":"MONDO:0002459"},{"relation_name":"excluded_subClassOf","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"excluded_subClassOf","term_name":"unexplained periodic fever syndrome","termid":"MONDO:0015158"},{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schnitzler syndrome","secondary_identifiers":["icd11.foundation:1867840545","EFO:1001165","SCTID:402415001","MESH:D019873","MedDRA:10062908","GARD:12390","NORD:1696","ICD9:708.8","MEDGEN:141892","DOID:4371","UMLS:C0524988"],"synonyms":[{"name":"chronic urticaria with gammapathy","type":"related"},{"name":"chronic urticaria with gammopathy","type":"exact"},{"name":"chronic urticaria with macroglobulinemia","type":"exact"}],"termid":"MONDO:0018304","xrefs":{"Monarch":{"xref_id":"0018304"}}}


id: PBO:0001851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphosphomevalonate decarboxylase (predicted)","termid":"PBO:0001851"}


id: PBO:0069096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 343, pseudogene","termid":"PBO:0069096"}


id: MONDO:0859236
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with neuromuscular and skeletal abnormalities","secondary_identifiers":["OMIM:619833","MEDGEN:1803456","UMLS:C5676965"],"termid":"MONDO:0859236","xrefs":{"Monarch":{"xref_id":"0859236"}}}


id: MONDO:0002059
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete breast duct papilloma (obsolete MONDO:0002059)","termid":"MONDO:0002059","xrefs":{"Monarch":{"xref_id":"0002059"}}}


id: PBO:0090924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Ubc16","termid":"PBO:0090924"}


id: GO:0005647
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete importin, alpha-subunit (obsolete GO:0005647)","synonyms":[{"name":"importin, alpha-subunit","type":"exact"},{"name":"karyopherin-alpha","type":"exact"}],"termid":"GO:0005647"}


id: MONDO:0015749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deletion 6q16 syndrome is a Prader-Willi like syndrome characterized by obesity, hyperphagia, hypotonia, small hands and feet, eye/vision anomalies, and global developmental delay.","definition_xrefs":["Orphanet:171829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 6","termid":"MONDO:0016905"},{"relation_name":"is_a","term_name":"Prader-Willi-like syndrome","termid":"MONDO:0018354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"6q16 deletion syndrome","secondary_identifiers":["MEDGEN:1759989","UMLS:C5438727","GARD:20126"],"synonyms":[{"name":"Del(6)(q16)","type":"exact"},{"name":"Prader-Willi-like syndrome due to deletion 6q16","type":"exact"},{"name":"monosomy 6q16","type":"exact"}],"termid":"MONDO:0015749","xrefs":{"Monarch":{"xref_id":"0015749"}}}


id: PBO:0064739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 75","termid":"PBO:0064739"}


id: PBO:0066586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho related BTB domain containing 1","termid":"PBO:0066586"}


id: PATO:0000845
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000845 auditory ability (obsolete PATO:0000845)","termid":"PATO:0000845"}


id: GO:0007569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469).","definition_xrefs":["GOC:PO_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cell aging (obsolete GO:0007569)","synonyms":[{"name":"cell ageing","type":"exact"}],"termid":"GO:0007569"}


id: GO:0008537
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"proteasome accessory complex","termid":"GO:0022624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proteasome activator complex","synonyms":[{"name":"PA28","type":"narrow"}],"termid":"GO:0008537"}


id: PBO:0005673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uricase (predicted)","termid":"PBO:0005673"}


id: PBO:0045215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C8","termid":"PBO:0045215"}


id: GO:0061316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the progression of the heart over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway involved in heart development","termid":"GO:0003306"},{"relation_name":"is_a","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"canonical Wnt signaling pathway involved in heart development","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:0061316"}


id: PBO:0065762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridine nucleotide-disulphide oxidoreductase domain 2","termid":"PBO:0065762"}


id: FYPO:0006208
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell differs from normal during a cellular response to copper ion starvation. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level","termid":"FYPO:0000824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"altered RNA level during cellular response to copper ion starvation","synonyms":[{"name":"abnormal RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered RNA level during cellular response to copper starvation","type":"exact"},{"name":"altered RNA level during copper starvation","type":"exact"},{"name":"altered cellular RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered transcript level during cellular response to copper ion starvation","type":"exact"}],"termid":"FYPO:0006208"}


id: FYPO:0003290
data:
  {"alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the structure of the glycan moiety of a glycoprotein differs from wild type.","definition_xrefs":["PMID:9125114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"},{"relation_name":"output_of","term_name":"abnormal protein glycosylation during vegetative growth","termid":"FYPO:0001910"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":1,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal glycoprotein glycan structure","references_by_uniquename":{"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta"],"synonyms":[{"name":"abnormal glycoprotein oligosaccharide structure","type":"related"}],"termid":"FYPO:0003290","terms_by_termid":{"FYPO:0003727":null,"FYPO_EXT:0000001":null}}


id: PBO:0080942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zygote arrest 1","termid":"PBO:0080942"}


id: MONDO:0018916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Anorectal malformations (ARM) comprise a wide spectrum of malformations involving the distal anus and rectum as well as the urinary and genital tracts, which can affect boys and girls.","definition_xrefs":["Orphanet:557"],"gene_count":0,"genotype_count":0,"name":"obsolete isolated anorectal malformation (obsolete MONDO:0018916)","synonyms":[{"name":"nonsyndromic anorectal malformation","type":"exact"}],"termid":"MONDO:0018916","xrefs":{"Monarch":{"xref_id":"0018916"}}}


id: MONDO:0012947
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the KIRREL3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual disability, autosomal dominant","termid":"MONDO:0100172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 4","secondary_identifiers":["DOID:0070034","MEDGEN:393397","MESH:C567240","OMIM:612581","GARD:16455","UMLS:C2675487"],"synonyms":[{"name":"KIRREL3 autosomal dominant non-syndromic intellectual disability","type":"exact"},{"name":"MRD4","type":"exact"},{"name":"autosomal dominant intellectual disability 4","type":"exact"},{"name":"autosomal dominant mental retardation 4","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 4","type":"related"},{"name":"autosomal dominant non-syndromic intellectual disability caused by mutation in KIRREL3","type":"exact"},{"name":"intellectual disability, autosomal dominant 4","type":"exact"},{"name":"intellectual disability, autosomal dominant type 4","type":"exact"},{"name":"mental retardation, autosomal dominant 4","type":"related"},{"name":"mental retardation, autosomal dominant type 4","type":"exact"}],"termid":"MONDO:0012947","xrefs":{"Monarch":{"xref_id":"0012947"}}}


id: MONDO:0006956
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of infectious diseases that is caused by Rickettsia.","definition_xrefs":["NCIT:C34991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rickettsiosis","secondary_identifiers":["Orphanet:102021","GARD:19827","ICD9:083.9","MedDRA:10061495","MESH:D012282","UMLS:C0035585","MEDGEN:20584","ICD10CM:A75-A79","SCTID:37246009","EFO:1001162"],"synonyms":[{"name":"Rickettsia caused disease or disorder","type":"exact"},{"name":"Rickettsia disease or disorder","type":"exact"},{"name":"Rickettsia infection","type":"exact"},{"name":"Rickettsia infectious disease","type":"exact"},{"name":"Rickettsiae disease","type":"exact"},{"name":"Rickettsial disease","type":"exact"},{"name":"Rickettsial infectious disease","type":"exact"},{"name":"Rickettsial infectious disorder","type":"exact"},{"name":"Rickettsiosis","type":"exact"},{"name":"infection, Rickettsia","type":"exact"},{"name":"infections, Rickettsia","type":"exact"}],"termid":"MONDO:0006956","xrefs":{"Monarch":{"xref_id":"0006956"}}}


id: PBO:0039277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 6, pseudogene","termid":"PBO:0039277"}


id: GO:0045107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Assembly of intermediate filaments by the addition of component monomers to a filament. Polymerization of intermediate filament proteins results from interactions among several distinct binding sites on the constituent proteins. Nuclear lamin head-to-tail polymers arise from one such interaction. Deletion analysis localized the binding sites to the ends of the rod domain that are highly conserved among all intermediate filament proteins. Data indicate that one type of interaction in intermediate filament protein polymerization is the longitudinal binding of dimers via the conserved end segments of the coiled-coil rod domain.","definition_xrefs":["GOC:mah","PMID:8776884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intermediate filament polymerization or depolymerization","termid":"GO:0045105"},{"relation_name":"is_a","term_name":"protein polymerization","termid":"GO:0051258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"intermediate filament polymerization","termid":"GO:0045107"}


id: PBO:0067985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 287","termid":"PBO:0067985"}


id: FYPO:0001134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 18S ribosomal RNA measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rRNA or precursor level","termid":"FYPO:0006000"},{"relation_name":"is_a","term_name":"normal mature ncRNA level","termid":"FYPO:0006469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal mature 18S rRNA level","synonyms":[{"name":"normal 18S rRNA level","type":"broad"},{"name":"normal mature 18S rRNA accumulation","type":"related"},{"name":"normal mature 18S rRNA level during mitotic cell cycle","type":"related"},{"name":"normal mature 18S rRNA level during vegetative growth","type":"exact"},{"name":"normal mature 18S rRNA transcript level","type":"exact"}],"termid":"FYPO:0001134"}


id: PBO:0076101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 6","termid":"PBO:0076101"}


id: PBO:0083179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the dubious ORF YHR180W-A","termid":"PBO:0083179"}


id: PR:O14109
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- maf1 gene.","definition_xrefs":["UniProtKB:O14109","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repressor of RNA polymerase III transcription maf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.12c","synonyms":[{"name":"Spom972h-maf1","type":"exact"}],"termid":"PR:O14109"}


id: PR:O74429
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1672.06c","secondary_identifiers":["UniProtKB:O74429"],"synonyms":[{"name":"InsP6 and PP-IP5 kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC1672.06c","type":"related"},{"name":"Spom972h-PPIP5K2","type":"exact"},{"name":"cortical actin cytoskeleton protein asp1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vip1","type":"related"}],"termid":"PR:O74429"}


id: PBO:0084146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity iron permease; involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron; protein abundance increases in response to DNA replication stress","termid":"PBO:0084146"}


id: MONDO:0018915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pneumococcal meningitis (obsolete MONDO:0018915)","termid":"MONDO:0018915","xrefs":{"Monarch":{"xref_id":"0018915"}}}


id: MONDO:0000098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thyrotoxic periodic paralysis (obsolete MONDO:0000098)","termid":"MONDO:0000098","xrefs":{"Monarch":{"xref_id":"0000098"}}}


id: MONDO:0011582
data:
  {"annotated_genes":["SJAG_03222"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87122],"is_not":false,"summary":null,"term":"MONDO:0011582"}]},"cv_name":"mondo","definition":"Any fatal multiple mitochondrial dysfunctions syndrome in which the cause of the disease is a mutation in the NFU1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatal multiple mitochondrial dysfunctions syndrome","termid":"MONDO:0017338"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03222":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"multiple mitochondrial dysfunctions syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080133","MEDGEN:478062","Orphanet:401869","OMIM:605711","GARD:17661","UMLS:C3276432"],"synonyms":[{"name":"MMDS1","type":"related"},{"name":"Mmds","type":"broad"},{"name":"NFU1 deficiency","type":"exact"},{"name":"NFU1 fatal multiple mitochondrial dysfunctions syndrome","type":"exact"},{"name":"fatal multiple mitochondrial dysfunctions syndrome caused by mutation in NFU1","type":"exact"},{"name":"multiple mitochondrial dysfunctions syndrome 1","type":"exact"},{"name":"multiple mitochondrial dysfunctions syndrome type 1","type":"exact"}],"termid":"MONDO:0011582","terms_by_termid":{"MONDO:0011582":null},"xrefs":{"Monarch":{"xref_id":"0011582"}}}


id: PBO:0030683
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_vegetative_cell","termid":"PBO:0030683"}


id: GO:0008300
data:
  {"annotated_genes":["SJAG_04954"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016095"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid metabolic process","termid":"GO:0006720"},{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"isoprenoid catabolic process","references_by_uniquename":{"GO_REF:0000104":null},"secondary_identifiers":["GO:0016097"],"synonyms":[{"name":"isoprenoid breakdown","type":"exact"},{"name":"isoprenoid catabolism","type":"exact"},{"name":"isoprenoid degradation","type":"exact"},{"name":"polyisoprenoid breakdown","type":"narrow"},{"name":"polyisoprenoid catabolic process","type":"narrow"},{"name":"polyisoprenoid catabolism","type":"narrow"},{"name":"polyisoprenoid degradation","type":"narrow"},{"name":"polyterpene catabolic process","type":"narrow"},{"name":"polyterpene catabolism","type":"narrow"}],"termid":"GO:0008300","terms_by_termid":{"GO:0016095":null}}


id: MONDO:0100224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"mitochondrial complex deficiency","termid":"MONDO:0000066"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0005336"],"is_obsolete":false,"name":"mitochondrial complex I deficiency, nuclear type 1","secondary_identifiers":["DOID:0112074","GARD:15201","NANDO:1200180","OMIM:252010"],"synonyms":[{"name":"MC1DN1","type":"exact"},{"name":"NADH-coenzyme Q reductase deficiency","type":"exact"},{"name":"NADH:Q(1) oxidoreductase deficiency","type":"exact"},{"name":"mitochondrial NADH dehydrogenase component of Complex I, deficiency of","type":"exact"},{"name":"mitochondrial complex 1 deficiency","type":"broad"},{"name":"mitochondrial complex I deficiency","type":"broad"},{"name":"mitochondrial complex I deficiency, nuclear type 1","type":"exact"}],"termid":"MONDO:0100224","xrefs":{"Monarch":{"xref_id":"0100224"}}}


id: PBO:0079480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxilin beta","termid":"PBO:0079480"}


id: MONDO:0025712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary angioedema","termid":"MONDO:0019623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"angioedema, hereditary, 4","secondary_identifiers":["OMIM:619360","UMLS:C5543503","MEDGEN:1787336"],"synonyms":[{"name":"HAE4","type":"exact"}],"termid":"MONDO:0025712","xrefs":{"Monarch":{"xref_id":"0025712"}}}


id: PBO:0070803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 33","termid":"PBO:0070803"}


id: PBO:0003064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidase Dug1 (predicted)","termid":"PBO:0003064"}


id: MONDO:0001932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete atrophic vulva (obsolete MONDO:0001932)","secondary_identifiers":["SCTID:248861000","ICD10CM:N90.5","DOID:14275","ICD9:624.1"],"synonyms":[{"name":"atrophic vulva","type":"exact"},{"name":"atrophic vulvitis","type":"related"},{"name":"atrophy of vulva","type":"exact"}],"termid":"MONDO:0001932","xrefs":{"Monarch":{"xref_id":"0001932"}}}


id: MONDO:0021082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm involving a Meckel's diverticulum.","definition_xrefs":["MONDO:patterns/neoplasm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ileal neoplasm","termid":"MONDO:0006801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"Meckel diverticulum neoplasm","secondary_identifiers":["MEDGEN:577167","SCTID:126836001","UMLS:C0345839"],"synonyms":[{"name":"Meckel's diverticulum neoplasm","type":"exact"},{"name":"Meckel's diverticulum neoplasm (disease)","type":"exact"},{"name":"Meckel's diverticulum tumor","type":"exact"},{"name":"Meckel's diverticulum tumour","type":"exact"},{"name":"neoplasm of Meckel's diverticulum","type":"exact"},{"name":"tumor of Meckel's diverticulum","type":"exact"},{"name":"tumour of Meckel's diverticulum","type":"exact"}],"termid":"MONDO:0021082","xrefs":{"Monarch":{"xref_id":"0021082"}}}


id: GO:0007444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the imaginal disc over time, from its formation to the metamorphosis to form adult structures. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.).","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc development","termid":"GO:0007444"}


id: GO:0046495
data:
  {"annotated_genes":["SJAG_03096","SJAG_04693"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115145],"is_not":false,"summary":null,"term":"GO:0046495"},{"annotations":[71867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071590"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine nucleoside metabolic process","termid":"GO:0070637"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03096":null,"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"nicotinamide riboside metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"N-ribosylnicotinamide metabolic process","type":"exact"},{"name":"nicotinamide riboside metabolism","type":"exact"}],"termid":"GO:0046495","terms_by_termid":{"GO:0046495":null,"GO:0071590":null}}


id: PBO:0002685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT I complex subunit Vps23","termid":"PBO:0002685"}


id: FYPO:0004141
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of glutathione (GSH) measured in a cell that is subject to nitrogen starvation is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"},{"relation_name":"is_a","term_name":"altered level of substance in cell during nitrogen starvation","termid":"FYPO:0004139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular glutathione level during nitrogen starvation","synonyms":[{"name":"decreased cellular GSH level during nitrogen starvation","type":"exact"},{"name":"decreased cellular L-gamma-glutamyl-L-cysteinylglycine level during nitrogen starvation","type":"exact"},{"name":"decreased cellular glutathione level during nitrogen depletion","type":"exact"},{"name":"decreased cellular glutathione level during nitrogen deprivation","type":"exact"},{"name":"decreased cellular reduced glutathione level during nitrogen starvation","type":"exact"},{"name":"decreased glutathione accumulation during nitrogen starvation","type":"related"},{"name":"reduced cellular glutathione level during nitrogen starvation","type":"exact"}],"termid":"FYPO:0004141"}


id: PBO:0080430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 14","termid":"PBO:0080430"}


id: PR:O13857
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1A6.03c gene.","definition_xrefs":["UniProtKB:O13857","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophospholipase C1A6.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1A6.03c","synonyms":[{"name":"Spom972h-SPAC1A6.03c","type":"exact"},{"name":"phospholipase B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13857"}


id: SO:0001187
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["PMID:12457565","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H_ACA_box_snoRNA","termid":"SO:0000594"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridylation_guide_snoRNA","synonyms":[{"name":"pseudouridylation guide snoRNA","type":"exact"}],"termid":"SO:0001187"}


id: PBO:0077759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM20 pseudogene 1","termid":"PBO:0077759"}


id: MONDO:0010746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thumbs, congenital Clasped","secondary_identifiers":["MEDGEN:98140","OMIM:314100","UMLS:C0431886"],"synonyms":[{"name":"Clasped thumbs, congenital","type":"related"},{"name":"adducted thumbs syndrome","type":"related"},{"name":"thumbs, congenital Clasped","type":"exact"}],"termid":"MONDO:0010746","xrefs":{"Monarch":{"xref_id":"0010746"}}}


id: MONDO:0002896
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The subclinical or symptomatic stage of syphilis, occurring at an average of three weeks after contact with an infected individual. It manifests with one or more painless, indurated ulcers (chancres) of the skin or mucous membranes at the site of inoculation. These lesions heal spontaneously within a few weeks.","definition_xrefs":["NCIT:C128412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syphilis","termid":"MONDO:0005976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary syphilis","secondary_identifiers":["MESH:C536772","UMLS:C2931317","ICD9:091","DOID:4156","SCTID:186846005","MEDGEN:419772"],"synonyms":[{"name":"early symptomatic syphilis","type":"exact"},{"name":"early syphilis, symptomatic","type":"exact"},{"name":"symptomatic early syphilis","type":"exact"}],"termid":"MONDO:0002896","xrefs":{"Monarch":{"xref_id":"0002896"}}}


id: MOD:01345
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to 2-amino-3-oxobutanoic acid.","definition_xrefs":["Unimod:401#T","PubMed:9252331","PubMed:12716131","OMSSA:23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-amino-3-oxobutanoic acid","synonyms":[{"name":"2-amino-3-ketobutyric acid","type":"exact"},{"name":"2-amino-3-oxo-butanoic_acid","type":"related"},{"name":"3-ketobutyrine","type":"exact"},{"name":"Didehydro","type":"related"},{"name":"twoamino3oxobutanoicacid","type":"exact"}],"termid":"MOD:01345"}


id: MONDO:0015852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete excess breast volume or number (obsolete MONDO:0015852)","secondary_identifiers":["Orphanet:180170"],"termid":"MONDO:0015852","xrefs":{"Monarch":{"xref_id":"0015852"}}}


id: PBO:0057963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3684","termid":"PBO:0057963"}


id: MONDO:0018899
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Posterior Cortical Atrophy (PCA) is a rare progressive neurodegenerative disorder with a typical onset between 50-65 years of age characterized by progressive impairment of higher visual processing skills and other posterior cortical functions without any evidence of ocular abnormalities.","definition_xrefs":["Orphanet:54247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary dementia","termid":"MONDO:0015547"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"posterior cortical atrophy","secondary_identifiers":["icd11.foundation:377572273","GARD:18846","UMLS:C4275079","SCTID:715574002","MEDGEN:909667"],"synonyms":[{"name":"Benson syndrome","type":"exact"},{"name":"PCA","type":"exact"},{"name":"biparietal Alzheimer disease","type":"exact"}],"termid":"MONDO:0018899","xrefs":{"Monarch":{"xref_id":"0018899"}}}


id: PBO:0040061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 5 like","termid":"PBO:0040061"}


id: SO:1001262
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a translational frameshift of -1.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translationally_frameshifted","termid":"SO:0000887"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minus_1_translationally_frameshifted","synonyms":[{"name":"minus 1 translationally frameshifted","type":"exact"}],"termid":"SO:1001262"}


id: PBO:0047960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fraser extracellular matrix complex subunit 1","termid":"PBO:0047960"}


id: FYPO:0007196
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial fission, the division of a mitochondrion into two or more separate compartments, occurs to a lower extent than normal.","definition_xrefs":["PMID:30602572","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial fission","termid":"FYPO:0004340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased mitochondrial fission","synonyms":[{"name":"decreased frequency of mitochondrial fission","type":"exact"},{"name":"decreased mitochondrial division","type":"exact"},{"name":"decreased mitochondrial fission during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial fission during vegetative growth","type":"exact"},{"name":"decreased mitochondrial proliferation","type":"related"},{"name":"reduced mitochondrial fission","type":"exact"}],"termid":"FYPO:0007196"}


id: FYPO:0007691
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange activator is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:33493431","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal molecular function","termid":"FYPO:0000706"},{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA strand exchange activator activity","synonyms":[{"name":"normal RecA-family recombinase activator activity","type":"exact"},{"name":"normal positive regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007691"}


id: PBO:0089534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone Nap1","termid":"PBO:0089534"}


id: GO:0017109
data:
  {"annotated_genes":["SJAG_00988","SJAG_03494"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[79385,80688],"is_not":false,"summary":null,"term":"GO:0017109"}]},"cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine.","definition_xrefs":["PMID:9675072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00988":null,"SJAG_03494":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"glutamate-cysteine ligase complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"gamma-glutamylcysteine synthetase complex","type":"exact"}],"termid":"GO:0017109","terms_by_termid":{"GO:0017109":null}}


id: GO:0044390
data:
  {"annotated_genes":["SJAG_00033","SJAG_00435","SJAG_01533"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76119,79409,76235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031624"}]},"cv_name":"molecular_function","definition":"Binding to a ubiquitin-like protein conjugating enzyme such as ubiquitin conjugating enzyme.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00033":null,"SJAG_00435":null,"SJAG_01533":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"ubiquitin-like protein conjugating enzyme binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"E2 protein ligase binding","type":"exact"},{"name":"small protein conjugating enzyme binding","type":"exact"}],"termid":"GO:0044390","terms_by_termid":{"GO:0031624":null}}


id: PBO:0046384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EOLA1 divergent transcript","termid":"PBO:0046384"}


id: PBO:0041371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C4orf46 pseudogene 3","termid":"PBO:0041371"}


id: GO:0100062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription factor catabolic process process that positively_regulates SREBP signaling pathway.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of SREBP signaling pathway by transcription factor catabolic process (obsolete GO:0100062)","termid":"GO:0100062"}


id: GO:0016938
data:
  {"annotated_genes":["SJAG_02336","SJAG_01297"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105898,110282],"is_not":false,"summary":null,"term":"GO:0016938"}]},"cv_name":"cellular_component","definition":"A complex of two kinesin heavy chains and two kinesin light chains.","definition_xrefs":["PMID:20930137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinesin complex","termid":"GO:0005871"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01297":null,"SJAG_02336":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"kinesin I complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016938","terms_by_termid":{"GO:0016938":null}}


id: SO:0000108
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA with a frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"frameshift","termid":"SO:0000865"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA_with_frameshift","synonyms":[{"name":"frameshifted mRNA","type":"exact"},{"name":"mRNA with frameshift","type":"exact"}],"termid":"SO:0000108"}


id: MONDO:0022821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital benign spinal muscular atrophy dominant","termid":"MONDO:0022821","xrefs":{"Monarch":{"xref_id":"0022821"}}}


id: GO:1990193
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex involved in cobalamin (vitamin B12) transport through the plasma membrane. In E. coli, the complex is a tetramer and consists of the cytoplasmic ATPase BtuD homodimer together with the transmembrane BtuC homodimer.","definition_xrefs":["PMID:22569249","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"BtuCD complex","synonyms":[{"name":"BtuC-BtuD complex","type":"exact"},{"name":"cobalamin transport complex, core subunit","type":"exact"},{"name":"vitamin B12 transport complex, core subunit","type":"exact"}],"termid":"GO:1990193"}


id: PR:Q9UUJ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ned1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUJ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear elongation and deformation protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.13","synonyms":[{"name":"Spom972h-ned1","type":"exact"}],"termid":"PR:Q9UUJ6"}


id: GO:0072759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a topoisomerase inhibitor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to topoisomerase inhibitor","termid":"GO:0072758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to topoisomerase inhibitor","termid":"GO:0072759"}


id: GO:0034868
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,4,4-trimethyl-3-hydroxypentanoyl-CoA = 2,4,4-trimethyl-3-oxopentanoyl-CoA + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity (obsolete GO:0034868)","termid":"GO:0034868"}


id: GO:0103026
data:
  {"annotated_genes":["SJAG_04242"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116660],"is_not":false,"summary":null,"term":"GO:0103026"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-fructose 1-phosphate + H2O = D-fructose + phosphate.","definition_xrefs":["RHEA:35603"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"fructose-1-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN0-5186"],"termid":"GO:0103026","terms_by_termid":{"GO:0103026":null}}


id: GO:0004385
data:
  {"annotated_genes":["SJAG_04849"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77878],"is_not":false,"summary":null,"term":"GO:0004385"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GMP = ADP + GDP.","definition_xrefs":["RHEA:20780"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate kinase activity","termid":"GO:0050145"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04849":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"GMP kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-110133","Reactome:R-HSA-9748949","Reactome:R-HSA-9748963","MetaCyc:GUANYL-KIN-RXN","EC:2.7.4.8","Reactome:R-HSA-73788"],"synonyms":[{"name":"5'-GMP kinase activity","type":"related"},{"name":"ATP:(d)GMP phosphotransferase activity","type":"related"},{"name":"ATP:GMP phosphotransferase activity","type":"related"},{"name":"deoxyguanylate kinase activity","type":"related"},{"name":"guanosine monophosphate kinase activity","type":"related"},{"name":"guanylate kinase activity","type":"related"},{"name":"membrane-associated guanylate kinase","type":"narrow"}],"termid":"GO:0004385","terms_by_termid":{"GO:0004385":null}}


id: MONDO:0700187
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition occurring in cats characterized by solitary or multiple cutaneous nodules and papules, which may metastasize late in the course of the disease. Lesions consist of poorly circumscribed histiocytic infiltrates of the superficial and deep dermis, with variable extension into the subcutis.","definition_xrefs":["NCIT:C176702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline progressive histiocytosis","termid":"MONDO:0700187","xrefs":{"Monarch":{"xref_id":"0700187"}}}


id: PBO:0052744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 36","termid":"PBO:0052744"}


id: PBO:0063661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase family member 4 pseudogene 2","termid":"PBO:0063661"}


id: SO:0000923
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a G.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000923 insert_G (obsolete SO:0000923)","synonyms":[{"name":"insert G","type":"exact"}],"termid":"SO:0000923"}


id: PBO:0059223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 5 (gene/pseudogene)","termid":"PBO:0059223"}


id: PBO:0039656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 1 subunit sigma 3","termid":"PBO:0039656"}


id: PR:P52808
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl3001 gene.","definition_xrefs":["UniProtKB:P52808","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L30-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.03c","synonyms":[{"name":"L32 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl3001","type":"exact"}],"termid":"PR:P52808"}


id: GO:0075306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of conidium formation, a process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus.","definition_xrefs":["GOC:pamgo_curators","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of asexual sporulation","termid":"GO:0034305"},{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"regulates","term_name":"conidium formation","termid":"GO:0048315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of conidium formation","termid":"GO:0075306"}


id: GO:0018164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a covalent cross-link between DNA and a peptidyl-threonine residue by the formation of O-(phospho-5'-DNA)-L-threonine.","definition_xrefs":["RESID:AA0255"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-DNA covalent cross-linking via peptidyl-threonine (obsolete GO:0018164)","synonyms":[{"name":"DNA-protein covalent cross-linking via peptidyl-threonine","type":"exact"}],"termid":"GO:0018164"}


id: PBO:0087001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-family GTPase interacting protein and Cdc42p effector; required with Gic2p for polarity establishment and initiation of budding; involved in recruitment of septins to the presumptive bud site; interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain; gic1 gic2 double mutants are defective for polarizing Cdc42p at elevated temperature, so may function both up- and downstream of Cdc42p; regulates mitotic exit; relocalizes from bud neck to nucleus upon DNA replication stress","termid":"PBO:0087001"}


id: GO:0030596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal non-reducing alpha-L-rhamnose residues in alpha-L-rhamnosides.","definition_xrefs":["EC:3.2.1.40"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"alpha-L-rhamnosidase activity","secondary_identifiers":["MetaCyc:3.2.1.40-RXN","RHEA:17465","KEGG_REACTION:R02436"],"synonyms":[{"name":"alpha-L-rhamnosidase N","type":"related"},{"name":"alpha-L-rhamnosidase T","type":"related"},{"name":"alpha-L-rhamnoside rhamnohydrolase activity","type":"related"}],"termid":"GO:0030596"}


id: MONDO:0016375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete acquired peripheral movement disorder (obsolete MONDO:0016375)","secondary_identifiers":["Orphanet:221114"],"termid":"MONDO:0016375","xrefs":{"Monarch":{"xref_id":"0016375"}}}


id: PBO:0029987
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_glycosylation","termid":"PBO:0029987"}


id: PBO:0045842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 32","termid":"PBO:0045842"}


id: GO:0031762
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a follicle-stimulating hormone receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"follicle-stimulating hormone receptor binding","synonyms":[{"name":"FSH receptor binding","type":"exact"},{"name":"follicle stimulating hormone receptor binding","type":"exact"},{"name":"follicle stimulating hormone receptor ligand","type":"narrow"}],"termid":"GO:0031762"}


id: MONDO:0012706
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A temporal lobe epilepsy characterized by autosomal dominant inheritance of occipitotemporal lobe epilepsy and migraine with visual aura and that has material basis in variation in the chromosome region 9q21-q22.","definition_xrefs":["PMID:17460155","DOID:0060753","PMID:18332351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temporal lobe epilepsy","termid":"MONDO:0005115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"familial temporal lobe epilepsy 4","secondary_identifiers":["MESH:C566902","OMIM:611631","GARD:15523","UMLS:C1968847","MEDGEN:368897"],"synonyms":[{"name":"EPOLM","type":"related"},{"name":"ETL4","type":"exact"},{"name":"epilepsy, familial temporal lobe, 4","type":"related"},{"name":"epilepsy, occipitotemporal lobe, and migraine with aura","type":"related"},{"name":"familial temporal lobe epilepsy type 4","type":"exact"},{"name":"occipitotemporal lobe epilepsy and migraine with aura","type":"related"}],"termid":"MONDO:0012706","xrefs":{"Monarch":{"xref_id":"0012706"}}}


id: GO:0008041
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete storage protein of fat body (sensu Insecta) (obsolete GO:0008041)","synonyms":[{"name":"storage protein of fat body (sensu Insecta)","type":"exact"}],"termid":"GO:0008041"}


id: GO:0050731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein phosphorylation","termid":"GO:0001934"},{"relation_name":"is_a","term_name":"regulation of peptidyl-tyrosine phosphorylation","termid":"GO:0050730"},{"relation_name":"positively_regulates","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptidyl-tyrosine phosphorylation","synonyms":[{"name":"activation of peptidyl-tyrosine phosphorylation","type":"narrow"},{"name":"stimulation of peptidyl-tyrosine phosphorylation","type":"narrow"},{"name":"up regulation of peptidyl-tyrosine phosphorylation","type":"exact"},{"name":"up-regulation of peptidyl-tyrosine phosphorylation","type":"exact"},{"name":"upregulation of peptidyl-tyrosine phosphorylation","type":"exact"}],"termid":"GO:0050731"}


id: PBO:0067450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 573, pseudogene","termid":"PBO:0067450"}


id: GO:0034980
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains CREB and FHL2, and is involved in transcriptional regulation.","definition_xrefs":["PMID:11046156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase complex","termid":"GO:0033202"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"FHL2-CREB complex","termid":"GO:0034980"}


id: GO:1903978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microglial cell activation.","definition_xrefs":["GO_REF:0000058","GOC:nc","GOC:TermGenie","PMID:19100238","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macrophage activation","termid":"GO:0043030"},{"relation_name":"is_a","term_name":"regulation of neuroinflammatory response","termid":"GO:0150077"},{"relation_name":"regulates","term_name":"microglial cell activation","termid":"GO:0001774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of microglial cell activation","termid":"GO:1903978"}


id: MONDO:0019144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital protein S deficiency is an inherited coagulation disorder characterized by recurrent venous thrombosis symptoms due to reduced synthesis and/or activity levels of protein S.","definition_xrefs":["Orphanet:743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein S deficiency","termid":"MONDO:0002304"},{"relation_name":"is_a","term_name":"inherited thrombophilia","termid":"MONDO:0100240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"hereditary thrombophilia due to congenital protein S deficiency","secondary_identifiers":["GARD:16543","icd11.foundation:1305244529","UMLS:C2584611","MEDGEN:748876","DOID:0111905"],"synonyms":[{"name":"autosomal recessive thrombophilia due to congenital protein S deficiency","type":"exact"},{"name":"hereditary thrombophilia due to congenital protein S deficiency","type":"exact"},{"name":"severe hereditary thrombophilia due to congenital protein S deficiency","type":"related"}],"termid":"MONDO:0019144","xrefs":{"Monarch":{"xref_id":"0019144"}}}


id: SO:0001545
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes polyadenylation with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_processing_variant","termid":"SO:0001543"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyadenylation_variant","synonyms":[{"name":"polyadenylation variant","type":"exact"}],"termid":"SO:0001545"}


id: GO:0004137
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP.","definition_xrefs":["EC:2.7.1.74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxynucleoside kinase activity","termid":"GO:0019136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"deoxycytidine kinase activity","secondary_identifiers":["RHEA:20061","MetaCyc:DEOXYCYTIDINE-KINASE-RXN"],"synonyms":[{"name":"2'-deoxycytidine kinase activity","type":"related"},{"name":"Ara-C kinase activity","type":"related"},{"name":"NTP:deoxycytidine 5'-phosphotransferase activity","type":"related"},{"name":"arabinofuranosylcytosine kinase activity","type":"related"},{"name":"deoxycytidine kinase (phosphorylating)","type":"related"},{"name":"deoxycytidine-cytidine kinase activity","type":"related"}],"termid":"GO:0004137"}


id: PBO:0077085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53 induced glycolysis regulatory phosphatase","termid":"PBO:0077085"}


id: PBO:0051092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy joining 3","termid":"PBO:0051092"}


id: PBO:0074648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 38","termid":"PBO:0074648"}


id: GO:0031707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endothelin A receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bombesin receptor binding","termid":"GO:0031705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"endothelin A receptor binding","synonyms":[{"name":"endothelin A receptor ligand","type":"narrow"},{"name":"endothelin-1 receptor binding","type":"exact"}],"termid":"GO:0031707"}


id: GO:0007374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a cup-shaped invagination at the posterior end of the embryo, bringing the posterior midgut and hindgut primordia into the interior.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"gastrulation involving germ band extension","termid":"GO:0010004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"posterior midgut invagination","termid":"GO:0007374"}


id: PBO:0073832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 8","termid":"PBO:0073832"}


id: PBO:0011972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA recombination protein Rad22 (previously Rad52)","termid":"PBO:0011972"}


id: GO:0034384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle clearance","termid":"GO:0034381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"high-density lipoprotein particle clearance","secondary_identifiers":["Reactome:R-HSA-8964011"],"synonyms":[{"name":"HDL clearance","type":"exact"}],"termid":"GO:0034384"}


id: GO:0030774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + anthranilate = N-methylanthranilate + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["RHEA:12180","EC:2.1.1.111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"anthranilate N-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R00984","MetaCyc:ANTHRANILATE-N-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:anthranilate N-methyltransferase activity","type":"related"},{"name":"anthranilic acid N-methyltransferase activity","type":"related"}],"termid":"GO:0030774"}


id: PBO:0041355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 4B (Chido blood group), copy 2","termid":"PBO:0041355"}


id: PBO:0091659
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferric Reductase in Pombe","termid":"PBO:0091659"}


id: MONDO:0013263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the PCARE gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"},{"relation_name":"is_a","term_name":"PCARE-related retinopathy","termid":"MONDO:0800404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 54","secondary_identifiers":["DOID:0110364","MEDGEN:462041","OMIM:613428","GARD:15662","UMLS:C3150691","ICD10CM:H35.5"],"synonyms":[{"name":"PCARE retinitis pigmentosa","type":"exact"},{"name":"RP54","type":"exact"},{"name":"retinitis pigmentosa 54","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in PCARE","type":"exact"},{"name":"retinitis pigmentosa type 54","type":"exact"}],"termid":"MONDO:0013263","xrefs":{"Monarch":{"xref_id":"0013263"}}}


id: PBO:0081771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 703","termid":"PBO:0081771"}


id: MONDO:0958266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"scleritis","termid":"MONDO:0001718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"immune-mediated scleritis","secondary_identifiers":["UMLS:C5578029","MEDGEN:1853164","Orphanet:648681"],"termid":"MONDO:0958266","xrefs":{"Monarch":{"xref_id":"0958266"}}}


id: MONDO:0100325
data:
  {"annotated_genes":["SJAG_04528"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87181],"is_not":false,"summary":null,"term":"MONDO:0100325"}]},"cv_name":"mondo","definition":"A very rare syndrome associating chondrodysplasia with dentinogenesis imperfecta.","definition_xrefs":["Orphanet:166272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"odontochondrodysplasia","termid":"MONDO:0031169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04528":null},"genotype_count":0,"is_obsolete":false,"name":"odontochondrodysplasia 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1784281","SCTID:717823001","UMLS:C5542277","GARD:8717","OMIM:184260"],"synonyms":[{"name":"Goldblatt chondrodysplasia","type":"exact"},{"name":"Goldblatt syndrome","type":"exact"},{"name":"ODCD","type":"exact"},{"name":"chondrodysplasia-dentinogenesis imperfecta-joint laxity syndrome","type":"exact"},{"name":"odontochondrodysplasia","type":"broad"},{"name":"spondylometaphyseal dysplasia with dentinogenesis imperfecta","type":"related"}],"termid":"MONDO:0100325","terms_by_termid":{"MONDO:0100325":null},"xrefs":{"Monarch":{"xref_id":"0100325"}}}


id: FYPO:0003076
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the autophosphorylation of one or more specific proteins, or of specific protein sites, is normal (i.e. indistinguishable from wild type). Protein autophosphorylation is the phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.","definition_xrefs":["GO:0031952","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein autophosphorylation during vegetative growth","synonyms":[{"name":"normal protein autophosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003076"}


id: MONDO:0020731
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral infection that is transmitted by an arthropod.","definition_xrefs":["NCIT:C34396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"vector-borne disease","termid":"MONDO:0100120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arbovirus infection","secondary_identifiers":["EFO:1001269","SCTID:40610006","UMLS:C0003723","MESH:D001102","MEDGEN:389"],"synonyms":[{"name":"ARBOVIRUS INFECT","type":"related"},{"name":"Arboviral disease","type":"related"},{"name":"Arbovirus Infection","type":"related"},{"name":"Arbovirus Infections","type":"related"},{"name":"Arbovirus infection","type":"related"},{"name":"Arthropod-Borne Viral Infection","type":"related"},{"name":"Arthropod-borne viral infection","type":"related"},{"name":"Infection, Arbovirus","type":"related"},{"name":"Infections, Arbovirus","type":"related"},{"name":"arbovirus infection","type":"exact"},{"name":"arthropod-borne viral infection","type":"exact"}],"termid":"MONDO:0020731","xrefs":{"Monarch":{"xref_id":"0020731"}}}


id: GO:0071876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of signal initiation in which epinephrine or norepinephrine causes activation of an adrenergic receptor.","definition_xrefs":["GOC:BHF","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete initiation of adrenergic receptor signal transduction (obsolete GO:0071876)","synonyms":[{"name":"initiation of adrenergic receptor signal transduction","type":"exact"}],"termid":"GO:0071876"}


id: FYPO:0001047
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell proceeds through the mitotic metaphase/anaphase transition in the presence of an uncorrected problem (such as chromosome structure or kinetochore attachment), and as a result undergoes abnormal nuclear division and subsequently dies.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic catastrophe (obsolete FYPO:0001047)","synonyms":[{"name":"mitotic catastrophe during mitotic cell cycle","type":"related"},{"name":"mitotic catastrophe during vegetative growth","type":"exact"}],"termid":"FYPO:0001047"}


id: GO:0103008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-chloro-2-methylphenoxyacetate + 2-oxoglutarate + O2 = 4-chloro-2-methylphenol + 2-oxo monocarboxylic acid anion + succinate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-chloro-2-methylphenoxyacetate oxygenase activity (obsolete GO:0103008)","termid":"GO:0103008"}


id: PR:Q9UTQ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1093.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTQ0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCA tRNA nucleotidyltransferase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.04c","synonyms":[{"name":"CCA-adding enzyme 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC1093.04c","type":"exact"},{"name":"tRNA CCA-pyrophosphorylase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA adenylyltransferase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA nucleotidyltransferase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTQ0"}


id: GO:0060327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell from one place to another.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-mediated cell contraction","termid":"GO:0070252"},{"relation_name":"part_of","term_name":"cell motility","termid":"GO:0048870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"}


id: PBO:0067842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 144","termid":"PBO:0067842"}


id: PBO:0059773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 47","termid":"PBO:0059773"}


id: PBO:0042749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein U pseudogene 2","termid":"PBO:0042749"}


id: GO:0030121
data:
  {"annotated_genes":["SJAG_00379","SJAG_04609","SJAG_04565","SJAG_01809"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[63029,79573,114840,115051],"is_not":false,"summary":null,"term":"GO:0030121"}]},"cv_name":"cellular_component","definition":"A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C).","definition_xrefs":["PMID:10611976","PMID:21097499","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin adaptor complex","termid":"GO:0030131"},{"relation_name":"part_of","term_name":"clathrin coat of trans-Golgi network vesicle","termid":"GO:0030130"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00379":null,"SJAG_01809":null,"SJAG_04565":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991","GO:0031410","GO:0005794"],"is_obsolete":false,"name":"AP-1 adaptor complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"AP-1 related adapter complex","type":"related"},{"name":"HA1","type":"exact"},{"name":"HA1 clathrin adaptor","type":"exact"}],"termid":"GO:0030121","terms_by_termid":{"GO:0030121":null}}


id: PBO:0081489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 385A","termid":"PBO:0081489"}


id: GO:2000562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of alpha-beta T cell proliferation","termid":"GO:0046642"},{"relation_name":"is_a","term_name":"negative regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000515"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell proliferation","termid":"GO:2000561"},{"relation_name":"negatively_regulates","term_name":"CD4-positive, alpha-beta T cell proliferation","termid":"GO:0035739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of CD4-positive, alpha-beta T cell proliferation","termid":"GO:2000562"}


id: MONDO:0013732
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucocorticoid therapy, response to","secondary_identifiers":["MEDGEN:482319","OMIM:614400","UMLS:C3280689"],"synonyms":[{"name":"GCTR","type":"related"},{"name":"glucocorticoid therapy, response to","type":"exact"}],"termid":"MONDO:0013732","xrefs":{"Monarch":{"xref_id":"0013732"}}}


id: PBO:0041980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 24","termid":"PBO:0041980"}


id: MONDO:0016581
data:
  {"annotated_genes":["SJAG_02730"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87321],"is_not":false,"summary":null,"term":"MONDO:0016581"},{"annotations":[88586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008542"}]},"cv_name":"mondo","definition":"Conotruncal heart malformations are a group of congenital cardiac outflow tract anomalies that include such defects as tetralogy of Fallot, pulmonary atresia with ventricular septal defect, double-outlet right ventricle (DORV), double-outlet left ventricle, truncus arteriosus and transposition of the great arteries (TGA), among others. This group of defects is frequently found in patients with 22q11.2 deletion syndrome. A deletion of chromosome 22q11.2 has equally been associated in a subset of patients with various types of isolated non-syndromic conotruncal heart malformations (with the exception of DORV and TGA where this is very uncommon).","definition_xrefs":["Orphanet:2445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02730":null},"genotype_count":0,"is_obsolete":false,"name":"conotruncal heart malformations","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1857586","MEDGEN:341803","ICD9:747.11","NANDO:2200275","SCTID:218728005","GARD:8189","OMIM:217095"],"synonyms":[{"name":"CTHM","type":"related"},{"name":"Double-outlet right ventricle","type":"related"},{"name":"Taussig-Bing syndrome or defect","type":"exact"},{"name":"conotruncal anomaly face syndrome","type":"related"},{"name":"conotruncal cardiac defects","type":"related"},{"name":"conotruncal heart malformations","type":"exact"},{"name":"conotruncal heart malformations, variable","type":"exact"},{"name":"interrupted aortic Arch","type":"related"},{"name":"persistent truncus arteriosus","type":"related"},{"name":"truncus arteriosus communis","type":"related"}],"termid":"MONDO:0016581","terms_by_termid":{"MONDO:0008542":null,"MONDO:0016581":null},"xrefs":{"Monarch":{"xref_id":"0016581"}}}


id: PBO:0081987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 16","termid":"PBO:0081987"}


id: PR:P05764
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S21 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03124","PANTHER:PTHR10442:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.06","secondary_identifiers":["UniProtKB:P05764"],"synonyms":[{"name":"S28 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RPS21","type":"exact"}],"termid":"PR:P05764"}


id: GO:0097395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-32 stimulus.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-32","synonyms":[{"name":"response to IL-32","type":"exact"}],"termid":"GO:0097395"}


id: PBO:0046492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS transcription factor ERG","termid":"PBO:0046492"}


id: FYPO:0004552
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle in response to ionizing radiation exposure during mitotic G2 phase is normal (i.e. indistinguishable from wild type). Normally, cell cycle progression is slowed or arrested transiently following exposure to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle regulation during cellular response to ionizing radiation","termid":"FYPO:0001927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal cell cycle regulation during cellular response to ionizing radiation during mitotic G2 phase","synonyms":[{"name":"normal cell cycle delay following ionizing radiation during mitotic G2 phase","type":"exact"},{"name":"normal cell cycle regulation during cellular response to ionizing radiation during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"normal cell cycle regulation in response to ionizing radiation during mitotic G2 phase","type":"exact"},{"name":"normal mitotic cell cycle regulation during cellular response to ionizing radiation during G2 phase","type":"exact"}],"termid":"FYPO:0004552"}


id: PBO:0060162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 10 (pseudogene)","termid":"PBO:0060162"}


id: PBO:0083991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutathione-dependent oxidoreductase; mitochondrial matrix protein involved at an early step in the biogenesis of iron-sulfur centers along with Bol1p; hydroperoxide and superoxide-radical responsive; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p","termid":"PBO:0083991"}


id: GO:0016463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(in) = ADP + phosphate + Zn2+(out).","definition_xrefs":["RHEA:20621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transmembrane transporter activity","termid":"GO:0005385"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type zinc transporter activity","secondary_identifiers":["EC:7.2.2.12","MetaCyc:RXN0-5205"],"synonyms":[{"name":"ATP phosphohydrolase (Zn2+-exporting)","type":"exact"},{"name":"P(1B)-type ATPase activity","type":"narrow"},{"name":"P1B-type ATPase activity","type":"related"},{"name":"Zn(2+)-exporting ATPase activity","type":"related"},{"name":"Zn2+-exporting ATPase activity","type":"related"},{"name":"zinc exporting ATPase activity","type":"broad"},{"name":"zinc transmembrane transporter activity, phosphorylative mechanism","type":"related"},{"name":"zinc-exporting ATPase activity","type":"related"},{"name":"zinc-translocating P-type ATPase activity","type":"exact"}],"termid":"GO:0016463"}


id: PBO:0040001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 13B","termid":"PBO:0040001"}


id: FYPO:0004641
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of CAAX-protein geranylgeranyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal CAAX-protein geranylgeranyltransferase activity","termid":"FYPO:0004640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased CAAX-protein geranylgeranyltransferase activity","synonyms":[{"name":"reduced CAAX-protein geranylgeranyltransferase activity","type":"exact"}],"termid":"FYPO:0004641"}


id: PBO:0073356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family D member 1","termid":"PBO:0073356"}


id: PBO:0040917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 21","termid":"PBO:0040917"}


id: PBO:0059195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X2","termid":"PBO:0059195"}


id: PATO:0002492
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterolateral orientation","synonyms":[{"name":"anterolaterally directed","type":"exact"}],"termid":"PATO:0002492"}


id: PBO:0087961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transmembrane protein with a role in cell wall polymer composition; localizes on inner surface of plasma membrane at bud and in daughter cell; SKG1 has a paralog, AIM20, that arose from the whole genome duplication","termid":"PBO:0087961"}


id: GO:0046058
data:
  {"annotated_genes":["SJAG_02481"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118438],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006198"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"cyclic purine nucleotide metabolic process","termid":"GO:0052652"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"cAMP metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3',5' cAMP metabolic process","type":"exact"},{"name":"3',5' cAMP metabolism","type":"exact"},{"name":"3',5'-cAMP metabolic process","type":"exact"},{"name":"3',5'-cAMP metabolism","type":"exact"},{"name":"adenosine 3',5'-cyclophosphate metabolic process","type":"exact"},{"name":"adenosine 3',5'-cyclophosphate metabolism","type":"exact"},{"name":"cAMP generating peptide activity","type":"related"},{"name":"cAMP metabolism","type":"exact"},{"name":"cyclic AMP metabolic process","type":"exact"},{"name":"cyclic AMP metabolism","type":"exact"}],"termid":"GO:0046058","terms_by_termid":{"GO:0006198":null}}


id: FYPO:0007023
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional methylation of a guanosine residue in a tRNA molecule to form 1-methylguanosine occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:25404562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA modification","termid":"FYPO:0000372"},{"relation_name":"is_a","term_name":"abnormal tRNA methylation","termid":"FYPO:0001766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000294"],"is_obsolete":false,"name":"increased tRNA guanosine 1-methylation","synonyms":[{"name":"increased 1-methylguanosine level in tRNA","type":"related"},{"name":"increased guanosine N1-methylation","type":"exact"},{"name":"increased tRNA 1-methylguanosine formation","type":"exact"},{"name":"increased tRNA guanosine 1-methylation during mitotic cell cycle","type":"related"},{"name":"increased tRNA guanosine 1-methylation during vegetative growth","type":"exact"},{"name":"increased tRNA m1G formation","type":"exact"}],"termid":"FYPO:0007023"}


id: PBO:0111891
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CHY","termid":"PBO:0111891"}


id: PBO:0047073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 133 member B","termid":"PBO:0047073"}


id: MONDO:0019489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diffuse palmoplantar keratoderma-acrocyanosis syndrome is characterized by the association of diffuse palmoplantar keratoderma and acrocyanosis. It has been described in eight members of one family and in two sporadic cases. The mode of inheritance in the familial cases was autosomal dominant.","definition_xrefs":["Orphanet:86918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"diffuse palmoplantar keratoderma - acrocyanosis syndrome","secondary_identifiers":["UMLS:C4303588","GARD:19089","MEDGEN:929257"],"synonyms":[{"name":"diffuse palmoplantar hyperkeratosis-acrocyanosis syndrome","type":"exact"}],"termid":"MONDO:0019489","xrefs":{"Monarch":{"xref_id":"0019489"}}}


id: GO:1900527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of nucleus size that is involved in G1 to G0 transition.","definition_xrefs":["GOC:TermGenie","GOC:al","PMID:19366728"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of nucleus size involved in G1 to G0 transition (obsolete GO:1900527)","synonyms":[{"name":"regulation of nuclear size involved in G1 to G0 transition","type":"exact"},{"name":"regulation of nuclear size involved in G1/G0 transition","type":"exact"},{"name":"regulation of nuclear size involved in cell cycle quiescence","type":"related"},{"name":"regulation of nuclear size involved in establishment of cell quiescence","type":"exact"},{"name":"regulation of nuclear size involved in stationary phase","type":"related"},{"name":"regulation of nuclear volume involved in G1 to G0 transition","type":"exact"},{"name":"regulation of nuclear volume involved in G1/G0 transition","type":"exact"},{"name":"regulation of nuclear volume involved in cell cycle quiescence","type":"related"},{"name":"regulation of nuclear volume involved in establishment of cell quiescence","type":"exact"},{"name":"regulation of nuclear volume involved in stationary phase","type":"related"},{"name":"regulation of nucleus size involved in G1 to G0 transition","type":"exact"},{"name":"regulation of nucleus size involved in G1/G0 transition","type":"exact"},{"name":"regulation of nucleus size involved in cell cycle quiescence","type":"related"},{"name":"regulation of nucleus size involved in establishment of cell quiescence","type":"exact"},{"name":"regulation of nucleus size involved in stationary phase","type":"related"}],"termid":"GO:1900527"}


id: MONDO:0019205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The association of amelogenesis imperfecta and a microscopically typical hair dysplasia has been found in several members of a family in two generations. Transmission is X-linked.","definition_xrefs":["Orphanet:79129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"trichodysplasia-amelogenesis imperfecta syndrome","secondary_identifiers":["GARD:18943","MEDGEN:930013","UMLS:C4304344"],"termid":"MONDO:0019205","xrefs":{"Monarch":{"xref_id":"0019205"}}}


id: FYPO:0005057
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which meiotic DNA double-strand break clipping does not occur. Meiotic DNA double-strand break clipping is the process by which SPO11/Rec12-oligonucleotide complexes are removed from 5' DNA double-strand breaks induced during meiosis.","definition_xrefs":["GO:1990898","PomBase:mah","PMID:26130711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000293","FYPO:0000631"],"is_obsolete":false,"name":"abolished meiotic DNA double-strand break clipping","synonyms":[{"name":"meiotic DNA double-strand break clipping abolished","type":"exact"}],"termid":"FYPO:0005057"}


id: GO:0047361
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphomannan(n) + GDP-mannose = phosphomannan(n+1) + GMP.","definition_xrefs":["MetaCyc:2.7.8.9-RXN","EC:2.7.8.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016780","GO:0016740"],"is_obsolete":false,"name":"phosphomannan mannosephosphotransferase activity","synonyms":[{"name":"GDP-mannose:phosphomannan mannose phosphotransferase activity","type":"related"}],"termid":"GO:0047361"}


id: GO:0090397
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plant cell papilla that is part of a stigma papilla cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant cell papilla","termid":"GO:0090395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"stigma papilla","termid":"GO:0090397"}


id: PBO:0056583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uniporter dominant negative subunit beta","termid":"PBO:0056583"}


id: PBO:0051205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 4-31","termid":"PBO:0051205"}


id: PBO:0068147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 454","termid":"PBO:0068147"}


id: PBO:0004186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ZnF type","termid":"PBO:0004186"}


id: MOD:00412
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod artifact. OBSOLETE because Unimod entry 19 is now merged with Unimod 35 remap to MOD:00425 'monohydroxylated residue'.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00412 oxidation (obsolete MOD:00412)","termid":"MOD:00412"}


id: FYECO:0000339
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which auxin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ auxin","termid":"FYECO:0000339"}


id: GO:0071504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus.","definition_xrefs":["GOC:yaf","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to heparin","termid":"GO:0071503"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to heparin","termid":"GO:0071504"}


id: MONDO:0015770
data:
  {"annotated_genes":["SJAG_04398","SJAG_00301","SJAG_02829","SJAG_04110"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012794"},{"annotations":[88860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008980"},{"annotations":[87474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009514"},{"annotations":[87183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010961"},{"annotations":[88684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014497"}]},"cv_name":"mondo","definition":"Congenital hypogonadotropic hypogonadism (CHH) is a rare disorder of sexual maturation characterized by gonadotropin (Gn) deficiency with low sex steroid levels associated with low levels of follicle stimulating hormone (FSH) and luteinizing hormone (LH).","definition_xrefs":["Orphanet:174590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypogonadotropic hypogonadism","termid":"MONDO:0018555"},{"relation_name":"is_a","term_name":"non-acquired pituitary hormone deficiency","termid":"MONDO:0019824"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00301":null,"SJAG_02829":null,"SJAG_04110":null,"SJAG_04398":null},"genotype_count":0,"is_obsolete":false,"name":"congenital hypogonadotropic hypogonadism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:722944006","GARD:20135","icd11.foundation:1752075408","MEDGEN:859097","UMLS:C3899503","NANDO:1200383","ICD10CM:E23.0","NCIT:C120162"],"termid":"MONDO:0015770","terms_by_termid":{"MONDO:0008980":null,"MONDO:0009514":null,"MONDO:0010961":null,"MONDO:0012794":null,"MONDO:0014497":null},"xrefs":{"Monarch":{"xref_id":"0015770"}}}


id: GO:0034696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin F stimulus.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to prostaglandin","termid":"GO:0034694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to prostaglandin F","synonyms":[{"name":"response to prostaglandin F stimulus","type":"exact"}],"termid":"GO:0034696"}


id: GO:0009435
data:
  {"annotated_genes":["SJAG_04693","SJAG_03298","SJAG_02889","SJAG_02618","SJAG_01500"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76708,79599,115144],"is_not":false,"summary":null,"term":"GO:0009435"},{"annotations":[72763,82014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD+), a coenzyme that interconverts with its reduced form, NADH, in many redox and catabolic reactions. NAD+ is derived from various sources including vitamin B3.","definition_xrefs":["PMID:28648096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"},{"relation_name":"is_a","term_name":"nicotinamide nucleotide biosynthetic process","termid":"GO:0019359"},{"relation_name":"is_a","term_name":"NAD+ metabolic process","termid":"GO:0019674"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01500":null,"SJAG_02618":null,"SJAG_02889":null,"SJAG_03298":null,"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"NAD+ biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0006736"],"synonyms":[{"name":"NAD (oxidized) biosynthesis","type":"exact"},{"name":"NAD (oxidized) biosynthetic process","type":"exact"},{"name":"NAD (reduced) biosynthesis","type":"exact"},{"name":"NAD (reduced) biosynthetic process","type":"exact"},{"name":"NAD anabolism","type":"exact"},{"name":"NAD biosynthesis","type":"exact"},{"name":"NAD biosynthetic process","type":"exact"},{"name":"NAD formation","type":"exact"},{"name":"NAD synthesis","type":"exact"},{"name":"NADH biosynthesis","type":"exact"},{"name":"NADH biosynthetic process","type":"exact"},{"name":"nicotinamide adenine dinucleotide biosynthesis","type":"exact"},{"name":"nicotinamide adenine dinucleotide biosynthetic process","type":"exact"},{"name":"oxidized NAD biosynthesis","type":"exact"},{"name":"oxidized NAD biosynthetic process","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide biosynthesis","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide biosynthetic process","type":"exact"},{"name":"reduced NAD biosynthesis","type":"exact"},{"name":"reduced NAD biosynthetic process","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide biosynthesis","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide biosynthetic process","type":"exact"}],"termid":"GO:0009435","terms_by_termid":{"GO:0009435":null,"GO:0034355":null}}


id: PBO:0043204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"creatine kinase, mitochondrial 1B","termid":"PBO:0043204"}


id: GO:0046786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of organizing and assembling viral replication proteins in preparation for viral replication.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral genome replication","termid":"GO:0019079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral replication complex formation and maintenance","termid":"GO:0046786"}


id: PBO:0072567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRBP1 pseudogene 2","termid":"PBO:0072567"}


id: PBO:0077287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 30B","termid":"PBO:0077287"}


id: PBO:0061317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member A2","termid":"PBO:0061317"}


id: FYPO:0002372
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable and are shaped in the form of spheroids.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable spheroid vegetative cell population (obsolete FYPO:0002372)","synonyms":[{"name":"population of spheroid viable cells","type":"exact"},{"name":"viable rounded vegetative cell population","type":"exact"}],"termid":"FYPO:0002372"}


id: PBO:0083077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dipeptidyl aminopeptidase; synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p","termid":"PBO:0083077"}


id: GO:0046550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of asparagine to (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine as found in microcin C7 produced from the mccA gene in E. coli plasmid pMccC7.","definition_xrefs":["RESID:AA0328"],"gene_count":0,"genotype_count":0,"name":"obsolete (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine (obsolete GO:0046550)","synonyms":[{"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine anabolism from asparagine","type":"exact"},{"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine formation from asparagine","type":"exact"},{"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine synthesis from asparagine","type":"exact"}],"termid":"GO:0046550"}


id: PBO:0041504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 13 open reading frame 42","termid":"PBO:0041504"}


id: PBO:0002875
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.4.1","termid":"PBO:0002875"}


id: PBO:0063469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase E1 subunit alpha 2","termid":"PBO:0063469"}


id: GO:0036240
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the plasma membrane and the cell wall, as found in organisms such as filamentous fungi.","definition_xrefs":["GOC:di","PMID:21564341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periplasmic space","termid":"GO:0042597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"septal periplasm","synonyms":[{"name":"cell wall-enclosed septal periplasm","type":"exact"}],"termid":"GO:0036240"}


id: PBO:0084302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron-binding protein; involved in targeting cytoplasmic SRP-independent proteins to the ER; contains a CSL Zn finger and a DnaJ-domain; involved in diphthamide biosynthesis; ortholog human Dph4","termid":"PBO:0084302"}


id: PBO:0082616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coiled-coil protein involved in spindle-assembly checkpoint; required for inhibition of karyopherin/importin Pse1p (aka Kap121p) upon spindle assembly checkpoint arrest; phosphorylated by Mps1p upon checkpoint activation which leads to inhibition of anaphase promoting complex activity; forms a complex with Mad2p; gene dosage imbalance between MAD1 and MAD2 leads to chromosome instability","termid":"PBO:0082616"}


id: PBO:0062739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily E member 6","termid":"PBO:0062739"}


id: GO:0090158
data:
  {"annotated_genes":["SJAG_01437","SJAG_05289","SJAG_04413","SJAG_01460","SJAG_03812","SJAG_00053","SJAG_02683","SJAG_03170","SJAG_02595","SJAG_01848","SJAG_03795","SJAG_02763"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73813,75694,76158,92415,95676,121670],"is_not":false,"summary":null,"term":"GO:0090158"},{"annotations":[80329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016320"},{"annotations":[105470,110679,117027,110599,120671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990809"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an endoplasmic reticulum membrane.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_01437":null,"SJAG_01460":null,"SJAG_01848":null,"SJAG_02595":null,"SJAG_02683":null,"SJAG_02763":null,"SJAG_03170":null,"SJAG_03795":null,"SJAG_03812":null,"SJAG_04413":null,"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum membrane organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:26774782":null},"synonyms":[{"name":"endoplasmic reticulum membrane organisation","type":"exact"}],"termid":"GO:0090158","terms_by_termid":{"GO:0016320":null,"GO:0090158":null,"GO:1990809":null}}


id: MONDO:0020406
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"complete atrioventricular canal","termid":"MONDO:0015273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"complete atrioventricular canal-left heart obstruction syndrome","secondary_identifiers":["Orphanet:99066"],"synonyms":[{"name":"CAVC type A","type":"exact"},{"name":"CAVC-left heart obstruction syndrome","type":"exact"},{"name":"complete atrioventricular canal type A","type":"exact"}],"termid":"MONDO:0020406","xrefs":{"Monarch":{"xref_id":"0020406"}}}


id: MONDO:0006967
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete septic abortion (obsolete MONDO:0006967)","secondary_identifiers":["MESH:D000031","MedDRA:10040056"],"termid":"MONDO:0006967","xrefs":{"Monarch":{"xref_id":"0006967"}}}


id: GO:0150089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse between a multiple synapse bouton and one or more dendritic spines.","definition_xrefs":["PMID:10586883","PMID:7482800","PMID:8366344","PMID:11248111","GOC:bc","PMID:11466428","PMID:22028887","PMID:29774619","PMID:18501438","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multiple spine synapse organization","synonyms":[{"name":"multi-synapse organisation","type":"broad"},{"name":"multi-synapse organization","type":"broad"},{"name":"multi-synaptic organisation","type":"broad"},{"name":"multi-synaptic organization","type":"broad"},{"name":"multiple spine synapse organisation","type":"exact"},{"name":"multisynapse organisation","type":"broad"},{"name":"multisynapse organization","type":"broad"},{"name":"multisynaptic organisation","type":"broad"},{"name":"multisynaptic organization","type":"broad"}],"termid":"GO:0150089"}


id: PBO:0061137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME2 pseudogene 1","termid":"PBO:0061137"}


id: GO:0102869
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + 6-hydroxyflavone = 6-O-beta-D-glucosyl-6-hydroxyflavone + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-hydroxyflavone-glucosyltransferase activity (obsolete GO:0102869)","termid":"GO:0102869"}


id: GO:0009278
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A peptidoglycan polymer that forms the shape-determining structure of the cell all of Gram-negative bacteria.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete murein sacculus (obsolete GO:0009278)","synonyms":[{"name":"murein sacculus","type":"exact"}],"termid":"GO:0009278"}


id: MONDO:0859173
data:
  {"annotated_genes":["SJAG_03081"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88340],"is_not":false,"summary":null,"term":"MONDO:0859173"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial sick sinus syndrome","termid":"MONDO:0012061"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03081":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"sick sinus syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619464","UMLS:C5561949","MEDGEN:1794159"],"termid":"MONDO:0859173","terms_by_termid":{"MONDO:0859173":null},"xrefs":{"Monarch":{"xref_id":"0859173"}}}


id: MONDO:0000293
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parasitic infection that develops in the intermediate hosts of some tapeworm species (Taenia multiceps, T. serialis, T. brauni, or T. glomerata) and are caused by the coenurus, the larval stage of these worms. This disease occurs mainly in sheep and other ungulates, but occasionally can occur in humans too by accidental ingestion of worms' eggs.","definition_xrefs":["Wikipedia:Coenurosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taeniasis","termid":"MONDO:0000367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"coenurosis","secondary_identifiers":["SCTID:24360007","DOID:0050251","icd11.foundation:1545561495","ICD9:123.8","MEDGEN:3142","UMLS:C0009225"],"synonyms":[{"name":"caenurosis","type":"exact"},{"name":"coenuriasis","type":"exact"},{"name":"coenurosis","type":"exact"},{"name":"infection by larvae of multiceps","type":"related"},{"name":"infection by tapeworm larva","type":"related"},{"name":"sturdy","type":"related"}],"termid":"MONDO:0000293","xrefs":{"Monarch":{"xref_id":"0000293"}}}


id: GO:1904360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of spore germination.","definition_xrefs":["GO_REF:0000058","PMID:14718564","PMID:8798577","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of spore germination","termid":"GO:1904359"},{"relation_name":"negatively_regulates","term_name":"spore germination","termid":"GO:0009847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of spore germination","secondary_identifiers":["GO:0075008"],"synonyms":[{"name":"down regulation of spore germination","type":"exact"},{"name":"down-regulation of spore germination","type":"exact"},{"name":"downregulation of spore germination","type":"exact"},{"name":"inhibition of spore germination","type":"narrow"},{"name":"negative regulation of spore germination on or near host","type":"narrow"}],"termid":"GO:1904360"}


id: GO:0002276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a basophil resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the basophil has specifically bound via IgE bound to Fc-epsilonRI receptors, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte activation involved in immune response","termid":"GO:0002366"},{"relation_name":"is_a","term_name":"basophil activation","termid":"GO:0045575"},{"relation_name":"part_of","term_name":"myeloid cell activation involved in immune response","termid":"GO:0002275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basophil activation involved in immune response","synonyms":[{"name":"basophil activation during immune response","type":"related"}],"termid":"GO:0002276"}


id: PBO:0000823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER heat shock protein BiP","termid":"PBO:0000823"}


id: GO:0055066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent cations within an organism or cell.","definition_xrefs":["GOC:mah","GOC:jid","GOC:ceb"],"gene_count":0,"genotype_count":0,"name":"obsolete di-, tri-valent inorganic cation homeostasis (obsolete GO:0055066)","synonyms":[{"name":"di-, tri-valent inorganic cation homeostasis","type":"exact"}],"termid":"GO:0055066"}


id: MONDO:0006201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenoid cystic carcinoma that affects the ethmoid sinus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethmoid sinus cancer","termid":"MONDO:0001763"},{"relation_name":"is_a","term_name":"paranasal sinus adenoid cystic carcinoma","termid":"MONDO:0006352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ethmoid sinus adenoid cystic carcinoma","secondary_identifiers":["EFO:1000246","UMLS:C1333473","NCIT:C6238","MEDGEN:232471","DOID:2764"],"synonyms":[{"name":"adenoid cystic carcinoma of ethmoid sinus","type":"related"},{"name":"adenoid cystic carcinoma of the ethmoid sinus","type":"exact"}],"termid":"MONDO:0006201","xrefs":{"Monarch":{"xref_id":"0006201"}}}


id: PBO:0042963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 1","termid":"PBO:0042963"}


id: PBO:0082159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adenine phosphoribosyltransferase; catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis; APT1 has a paralog, APT2, that arose from the whole genome duplication","termid":"PBO:0082159"}


id: PBO:0085033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-canonical poly(A) polymerase; involved in nuclear RNA degradation as a component of TRAMP; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; required for mRNA surveillance and maintenance of genome integrity, serving as a link between RNA and DNA metabolism; overlapping but non-redundant functions with Trf5p; relocalizes to cytosol in response to hypoxia","termid":"PBO:0085033"}


id: MONDO:0001012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete breast fibroadenosis (obsolete MONDO:0001012)","secondary_identifiers":["ICD9:610.2","DOID:10352","ICD10CM:N60.2","SCTID:23260002"],"synonyms":[{"name":"fibroadenosis - breast","type":"exact"},{"name":"fibroadenosis of breast","type":"exact"}],"termid":"MONDO:0001012","xrefs":{"Monarch":{"xref_id":"0001012"}}}


id: PBO:0035754
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_filament-based_movement","termid":"PBO:0035754"}


id: PBO:0067676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 861, pseudogene","termid":"PBO:0067676"}


id: PBO:0014303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMR domain protein, possibly involved in DNA repair and neddylation","termid":"PBO:0014303"}


id: PBO:0059921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 7","termid":"PBO:0059921"}


id: GO:0098628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of phosphate residues from peptidyl-N-phospho-arginine to form peptidyl-arginine.","definition_xrefs":["PMID:23770242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein dephosphorylation","termid":"GO:0006470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-N-phospho-arginine dephosphorylation","termid":"GO:0098628"}


id: PBO:0078430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon TCC) 1-1","termid":"PBO:0078430"}


id: GO:0018129
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reduction of a peptide-linked oxazoline to oxazole.","definition_xrefs":["GOC:mah","PMID:19058272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"peptidyl-oxazoline dehydrogenase activity","termid":"GO:0018129"}


id: PR:O14329
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zrg17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc transporter zrg17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16E9.14c","synonyms":[{"name":"Spom972h-zrg17","type":"exact"}],"termid":"PR:O14329"}


id: PR:Q9P7J5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATPase family AAA domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04505","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized AAA domain-containing protein C24B10.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.10c","secondary_identifiers":["UniProtKB:Q9P7J5"],"synonyms":[{"name":"Spom972h-ATAD1","type":"exact"}],"termid":"PR:Q9P7J5"}


id: PR:G2TRJ5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRJ5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam6, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.14c","synonyms":[{"name":"Spom972h-tam6","type":"exact"},{"name":"transcripts altered in meiosis protein 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRJ5"}


id: PBO:0068796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 33, pseudogene","termid":"PBO:0068796"}


id: GO:0010646
data:
  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id: PBO:0068030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 335","termid":"PBO:0068030"}


id: PBO:0055147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2566","termid":"PBO:0055147"}


id: MONDO:0015866
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malignant tumor of fallopian tubes (obsolete MONDO:0015866)","termid":"MONDO:0015866","xrefs":{"Monarch":{"xref_id":"0015866"}}}


id: PBO:0031331
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_canavanine","termid":"PBO:0031331"}


id: PR:Q7LKV1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- whi2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7LKV1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C20H4.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.08","synonyms":[{"name":"Spom972h-whi2","type":"exact"}],"termid":"PR:Q7LKV1"}


id: PBO:0040953
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 24","termid":"PBO:0040953"}


id: PBO:0065888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB35 antisense RNA 1","termid":"PBO:0065888"}


id: GO:0032217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of riboflavin from one side of a membrane to the other. Riboflavin (vitamin B2) is a water-soluble B-complex vitamin, converted in the cell to FMN and FAD, cofactors required for the function of flavoproteins.","definition_xrefs":["PMID:16204239","GOC:rn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"vitamin transmembrane transporter activity","termid":"GO:0090482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"riboflavin transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-3165230"],"synonyms":[{"name":"riboflavin transporter activity","type":"related"}],"termid":"GO:0032217"}


id: GO:0019540
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including catechol. Catechol is one of the three major chemical groups incorporated into siderophore structures with hydroxamate and a-hydroxycarboxylate, each having a high selectivity for iron(3+).","definition_xrefs":["PMID:20376388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"siderophore biosynthetic process","termid":"GO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"catechol-containing siderophore biosynthetic process","secondary_identifiers":["GO:0031189","GO:0031190"],"termid":"GO:0019540"}


id: MONDO:0010389
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  {"annotated_genes":["SJAG_04743"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89175],"is_not":false,"summary":null,"term":"MONDO:0010389"}]},"cv_name":"mondo","definition":"Any X-linked Mendelian susceptibility to mycobacterial diseases in which the cause of the disease is a mutation in the CYBB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked Mendelian susceptibility to mycobacterial diseases","termid":"MONDO:0017905"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04743":null},"genotype_count":0,"is_obsolete":false,"name":"X-linked Mendelian susceptibility to mycobacterial diseases due to CYBB deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C567068","DOID:0112000","OMIM:300645","MEDGEN:370369","NANDO:2201279","Orphanet:319623","UMLS:C1970859"],"synonyms":[{"name":"CYBB X-linked mendelian susceptibility to mycobacterial diseases","type":"exact"},{"name":"IMD34","type":"related"},{"name":"X-linked MSMD due to CYBB deficiency","type":"exact"},{"name":"X-linked mendelian susceptibility to mycobacterial diseases caused by mutation in CYBB","type":"exact"},{"name":"atypical Mycobacteriosis, familial, X-linked 2","type":"related"},{"name":"immunodeficiency 34","type":"related"},{"name":"immunodeficiency 34, Mycobacteriosis, X-linked","type":"related"},{"name":"immunodeficiency 34, mycobacteriosis, X-linked, X-linked recessive","type":"exact"},{"name":"immunodeficiency type 34","type":"exact"}],"termid":"MONDO:0010389","terms_by_termid":{"MONDO:0010389":null},"xrefs":{"Monarch":{"xref_id":"0010389"}}}


id: PBO:0075408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm acrosome associated 5B","termid":"PBO:0075408"}


id: SO:0000810
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cDNA clone invalidated because it is chimeric.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"invalidated_by_chimeric_cDNA","termid":"SO:0000362"},{"relation_name":"is_a","term_name":"invalidated_cDNA_clone","termid":"SO:0000809"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chimeric_cDNA_clone","synonyms":[{"name":"chimeric cDNA clone","type":"exact"}],"termid":"SO:0000810"}


id: GO:0018168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of the chromophore phycoerythrobilin to phycoerythrocyanin via S-phycoerythrobilin-L-cysteine.","definition_xrefs":["RESID:AA0132"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-phycoerythrobilin linkage via S-phycoerythrobilin-L-cysteine (obsolete GO:0018168)","termid":"GO:0018168"}


id: GO:1902794
data:
  {"annotated_genes":["SJAG_04574","SJAG_01867","SJAG_04186","SJAG_01599","SJAG_03664","SJAG_04768","SJAG_00769","SJAG_02382","SJAG_03624","SJAG_02622","SJAG_03844"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89498,92804,106210,112537,114167,118598],"is_not":false,"summary":null,"term":"GO:1902794"},{"annotations":[93879,102325,99196,119820,120190],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902801"}]},"cv_name":"biological_process","definition":"The formation of facultative heterochromatin into a heterochromatin domain, enriched in histone H3 methylated on lysine 9 (H3K9me), by a process independent of small interfering RNAs.","definition_xrefs":["PMID:24210919","PMID:22144463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"facultative heterochromatin formation","termid":"GO:0140718"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00769":null,"SJAG_01599":null,"SJAG_01867":null,"SJAG_02382":null,"SJAG_02622":null,"SJAG_03624":null,"SJAG_03664":null,"SJAG_03844":null,"SJAG_04186":null,"SJAG_04574":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"siRNA-independent facultative heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"heterochromatin island assembly","type":"exact"},{"name":"heterochromatin island formation","type":"exact"},{"name":"siRNA-independent facultative heterochromatin assembly","type":"exact"}],"termid":"GO:1902794","terms_by_termid":{"GO:1902794":null,"GO:1902801":null}}


id: PBO:0051884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITCH antisense RNA 1","termid":"PBO:0051884"}


id: GO:1901483
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription factor catabolic process.","definition_xrefs":["GOC:TermGenie","GOC:vw","PMID:22833559","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription factor catabolic process (obsolete GO:1901483)","synonyms":[{"name":"regulation of proteasome-mediated transcription factor catabolism","type":"exact"},{"name":"regulation of sequence-specific DNA binding transcription factor catabolic process","type":"exact"},{"name":"regulation of transcription factor breakdown","type":"exact"},{"name":"regulation of transcription factor catabolism","type":"exact"},{"name":"regulation of transcription factor degradation","type":"exact"}],"termid":"GO:1901483"}


id: GO:0102115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-gamma-D-isoglutaminyl-N-(beta-D-asparatyl)-L-lysyl-D-alanyl-D-alanine + ammonium + ATP = H+ + ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-gamma-D-isoglutaminyl-N-(beta-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine + AMP + diphosphoric acid.","definition_xrefs":["EC:6.3.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"peptidoglycan asparagine synthase activity","secondary_identifiers":["MetaCyc:RXN-11338"],"termid":"GO:0102115"}


id: PBO:0084790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to E. coli and human mitochondrial S12 ribosomal proteins","termid":"PBO:0084790"}


id: MONDO:0023065
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete encephalopathy recurrent of childhood (obsolete MONDO:0023065)","termid":"MONDO:0023065","xrefs":{"Monarch":{"xref_id":"0023065"}}}


id: PBO:0068179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 486","termid":"PBO:0068179"}


id: PBO:0004152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sad1-UNC-like protein involved protein folding in the ER (predicted)","termid":"PBO:0004152"}


id: GO:0015209
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of cytosine, 4-amino-2-hydroxypyrimidine from one side of a membrane to the other.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase transmembrane transporter activity","termid":"GO:0005350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"cytosine transmembrane transporter activity","termid":"GO:0015209"}


id: PBO:0088535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin-A, F-box protein Pof4","termid":"PBO:0088535"}


id: GO:0018079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of a halogen to a protein amino acid.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein halogenation (obsolete GO:0018079)","synonyms":[{"name":"protein amino acid halogenation","type":"exact"}],"termid":"GO:0018079"}


id: GO:1900891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of pentadecane metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of pentadecane metabolic process","termid":"GO:1900890"},{"relation_name":"negatively_regulates","term_name":"pentadecane metabolic process","termid":"GO:1900633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pentadecane metabolic process","synonyms":[{"name":"down regulation of pentadecane metabolic process","type":"exact"},{"name":"down regulation of pentadecane metabolism","type":"related"},{"name":"down-regulation of pentadecane metabolic process","type":"exact"},{"name":"down-regulation of pentadecane metabolism","type":"related"},{"name":"downregulation of pentadecane metabolic process","type":"exact"},{"name":"downregulation of pentadecane metabolism","type":"related"},{"name":"inhibition of pentadecane metabolic process","type":"narrow"},{"name":"inhibition of pentadecane metabolism","type":"narrow"},{"name":"negative regulation of pentadecane metabolism","type":"related"}],"termid":"GO:1900891"}


id: GO:1903168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of pyrroline-5-carboxylate reductase activity.","definition_xrefs":["GOC:PARL","GO_REF:0000059","PMID:23743200","GOC:bf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of pyrroline-5-carboxylate reductase activity (obsolete GO:1903168)","synonyms":[{"name":"activation of 1-pyrroline-5-carboxylate reductase activity","type":"narrow"},{"name":"activation of L-proline oxidase activity","type":"narrow"},{"name":"activation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"narrow"},{"name":"activation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"narrow"},{"name":"activation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"narrow"},{"name":"activation of P5CR activity","type":"narrow"},{"name":"activation of pyrroline-5-carboxylate reductase activity","type":"narrow"},{"name":"positive regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"positive regulation of L-proline oxidase activity","type":"exact"},{"name":"positive regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"positive regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"positive regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"positive regulation of P5CR activity","type":"exact"},{"name":"up regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up regulation of L-proline oxidase activity","type":"exact"},{"name":"up regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"up regulation of P5CR activity","type":"exact"},{"name":"up regulation of pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up-regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up-regulation of L-proline oxidase activity","type":"exact"},{"name":"up-regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up-regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up-regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"up-regulation of P5CR activity","type":"exact"},{"name":"up-regulation of pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"upregulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"upregulation of L-proline oxidase activity","type":"exact"},{"name":"upregulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"upregulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"upregulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"upregulation of P5CR activity","type":"exact"},{"name":"upregulation of pyrroline-5-carboxylate reductase activity","type":"exact"}],"termid":"GO:1903168"}


id: PBO:0082257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-tubulin folding protein; similar to mammalian cofactor B; Alf1p-GFP localizes to cytoplasmic microtubules; required for the folding of alpha-tubulin and may play an additional role in microtubule maintenance","termid":"PBO:0082257"}


id: MONDO:0850129
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A gastrointestinal system cancer that is located in the proximal esophagus and the distal stomach.","definition_xrefs":["DOID:0080374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system cancer","termid":"MONDO:0002516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"gastroesophageal cancer","secondary_identifiers":["MEDGEN:577508","UMLS:C0346619"],"termid":"MONDO:0850129","xrefs":{"Monarch":{"xref_id":"0850129"}}}


id: GO:0008892
data:
  {"annotated_genes":["SJAG_01997"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80983],"is_not":false,"summary":null,"term":"GO:0008892"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: guanine + H2O = xanthine + NH3.","definition_xrefs":["EC:3.5.4.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01997":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"guanine deaminase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:GUANINE-DEAMINASE-RXN","Reactome:R-HSA-74255","RHEA:14665"],"synonyms":[{"name":"GAH activity","type":"related"},{"name":"guanase activity","type":"related"},{"name":"guanine aminase activity","type":"related"},{"name":"guanine aminohydrolase activity","type":"related"}],"termid":"GO:0008892","terms_by_termid":{"GO:0008892":null}}


id: PBO:0073499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SGSM3 antisense RNA 1","termid":"PBO:0073499"}


id: FYPO:0001013
data:
  {"alleles_by_uniquename":{"SJAG_00370:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00370","name":"erg1delta","uniquename":"SJAG_00370:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03360:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03360","name":"shc1delta","uniquename":"SJAG_03360:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121467,121466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006545"},{"annotations":[121221,121223,121243,121216],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003779"},{"annotations":[121389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000815"},{"annotations":[121309,121315,121401,121308,121244,121402,121316,121409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007772"},{"annotations":[121649,121650,121653,121665,121662,121657],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001556"},{"annotations":[121383],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cellular membrane organization is abnormal. Cellular membrane organization results in the assembly, arrangement of constituent parts, or disassembly of a lipid bilayer membrane, such as the plasma membrane or an organelle membrane.","definition_xrefs":["GO:0061024","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00370":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03360":null,"SJAG_03449":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_03940":null,"SJAG_04284":null,"SJAG_04464":null,"SJAG_05207":null},"genotype_count":18,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"erg1delta":{"display_name":"erg1delta","display_uniquename":"erg1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00370:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"shc1delta":{"display_name":"shc1delta","display_uniquename":"shc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03360:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal membrane organization","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:28954740":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:40195311":null},"single_locus_annotated_genes":["SJAG_03891","SJAG_03449","SJAG_01906","SJAG_00370","SJAG_03940","SJAG_04464","SJAG_03360","SJAG_03892","SJAG_02763","SJAG_04284","SJAG_05207","SJAG_01242","SJAG_01745"],"single_locus_genotype_uniquenames":["Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","vps32delta","nem2delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","nup61delta","nem1delta","alx1delta","shc1delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","lem2delta","man1delta","ned1delta","vps4delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","erg1delta","cmp7delta"],"synonyms":[{"name":"abnormal cellular membrane organization","type":"exact"},{"name":"abnormal membrane organisation","type":"exact"}],"termid":"FYPO:0001013","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000815":null,"FYPO:0001556":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO:0006545":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: GO:1904091
data:
  {"annotated_genes":["SJAG_01351","SJAG_04031"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097429"},{"annotations":[72418],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004363"}]},"cv_name":"molecular_function","definition":"Catalysis of a multistep reaction that produce non-ribosomal peptides. The key chain-building reaction, a C-N bond-forming reaction, involves the generation of the characteristic peptide bond by nucleophilic attack of the amino group of an amino-acyl donor unit covalently bound to a downstream peptidyl carrier protein module (amino acyl-S-PCP) on the acyl group of an upstream electrophilic acyl- or peptidyl acyl-S-PCP chain, catalyzed by a condensation (C) domain. Supplementing these core chain-elongation domains are variable numbers of auxiliary domains that are responsible for modification of the growing polypeptide chain by a small set of iterated reactions including epimerization, N-methylation, and heterocyclization.","definition_xrefs":["PMID:10631508","PMID:17502372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity","termid":"GO:0003824"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01351":null,"SJAG_04031":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674"],"is_obsolete":false,"name":"non-ribosomal peptide synthetase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"PCP","type":"related"},{"name":"peptidyl carrier protein","type":"related"},{"name":"peptidyl carrier protein activity","type":"related"},{"name":"peptidyl carrier protein activity involved in nonribosomal peptide biosynthesis","type":"exact"},{"name":"peptidyl carrier protein activity involved in nonribosomal peptide biosynthetic process","type":"exact"}],"termid":"GO:1904091","terms_by_termid":{"GO:0004363":null,"GO:0097429":null}}


id: PBO:0039007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFF2 intronic transcript 1","termid":"PBO:0039007"}


id: FYPO:0007164
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of microtubule sliding, i.e. movement of one microtubule along another microtubule, is decreased.","definition_xrefs":["GO:0051012","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule-based movement","termid":"FYPO:0007163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased microtubule sliding","termid":"FYPO:0007164"}


id: FYPO:0004091
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the microtubule cytoskeleton is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule cytoskeleton","termid":"FYPO:0004090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to microtubule cytoskeleton","synonyms":[{"name":"abolished protein localisation to microtubule cytoskeleton","type":"exact"},{"name":"protein localization to microtubule cytoskeleton abolished","type":"exact"}],"termid":"FYPO:0004091"}


id: PATO:0000636
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malformed","termid":"PATO:0000646"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventralized","termid":"PATO:0000636"}


id: PBO:0034116
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-molecularly_decreases_activity_of","termid":"PBO:0034116"}


id: MONDO:0012068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachial palsy, familial congenital","secondary_identifiers":["MESH:C563901","OMIM:608585","MEDGEN:324884","UMLS:C1837810"],"synonyms":[{"name":"brachial palsy, familial congenital","type":"exact"}],"termid":"MONDO:0012068","xrefs":{"Monarch":{"xref_id":"0012068"}}}


id: GO:0002262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.","definition_xrefs":["GOC:add","CL:0000763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid cell homeostasis","termid":"GO:0002262"}


id: PBO:0039568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene","termid":"PBO:0039568"}


id: PATO:0000222
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000222 muscle elevation (obsolete PATO:0000222)","termid":"PATO:0000222"}


id: GO:0001039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sequence of DNA that is a part of a hybrid type promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene.","definition_xrefs":["GOC:txnOH","PMID:12381659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase III cis-regulatory region sequence-specific DNA binding","termid":"GO:0000992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0000976","GO:0005488"],"is_obsolete":false,"name":"RNA polymerase III hybrid type promoter sequence-specific DNA binding","secondary_identifiers":["GO:0001037"],"synonyms":[{"name":"RNA polymerase III hybrid type promoter DNA binding","type":"related"}],"termid":"GO:0001039"}


id: PBO:0028192
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-premature_mitotic_DNA_replication_initiation","termid":"PBO:0028192"}


id: PBO:0036340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allantoicase Dal2","termid":"PBO:0036340"}


id: FYPO:0005695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of astral microtubules from the spindle pole body does not occur during mitosis.","definition_xrefs":["PomBase:mah","PMID:19001497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abolished cytoplasmic microtubule nucleation","termid":"FYPO:0005693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"abolished astral microtubule nucleation during mitosis","synonyms":[{"name":"abolished astral microtubule nucleation during mitosis during vegetative growth","type":"exact"},{"name":"abolished astral microtubule nucleation during mitotic nuclear division","type":"exact"},{"name":"astral microtubule nucleation during mitosis abolished","type":"exact"}],"termid":"FYPO:0005695"}


id: MONDO:0007044
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal dominant skeletal dysplasia caused by mutation(s) in the PRKAR1A gene, encoding cAMP-dependent protein kinase type I-alpha regulatory subunit. It is characterized by short stature, brachydactyly, and characteristic facial features. Resistance to multiple hormones is a common finding.","definition_xrefs":["NCIT:C136464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acrodysostosis","termid":"MONDO:0019797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Acrodysostosis 1 with or without hormone resistance","secondary_identifiers":["GARD:15030","OMIM:101800","UMLS:C3276228","MEDGEN:477858"],"synonyms":[{"name":"ACRDYS1","type":"related"},{"name":"ADOHR","type":"exact"},{"name":"Acrodysostosis 1","type":"exact"},{"name":"Acrodysostosis 1 with or without hormone resistance","type":"exact"},{"name":"Acrodysostosis 1, with or without hormone resistance","type":"exact"}],"termid":"MONDO:0007044","xrefs":{"Monarch":{"xref_id":"0007044"}}}


id: GO:1903315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nitrogen cycle metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:vw","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of nitrogen cycle metabolic process","termid":"GO:1903314"},{"relation_name":"negatively_regulates","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0071941"},{"rel_name":"regulates","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071941"],"is_obsolete":false,"name":"negative regulation of nitrogen cycle metabolic process","synonyms":[{"name":"down regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"down-regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"downregulation of nitrogen cycle metabolic process","type":"exact"},{"name":"inhibition of nitrogen cycle metabolic process","type":"narrow"}],"termid":"GO:1903315"}


id: MONDO:0007063
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A adamantinoma that involves the long bone.","definition_xrefs":["MONDO:patterns/location"],"gene_count":0,"genotype_count":0,"name":"obsolete long bone adamantinoma (obsolete MONDO:0007063)","termid":"MONDO:0007063","xrefs":{"Monarch":{"xref_id":"0007063"}}}


id: PATO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.","definition_xrefs":["wordreference:wordreference"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triangular","termid":"PATO:0001875"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cuneate","synonyms":[{"name":"wedge-shaped","type":"exact"}],"termid":"PATO:0001955"}


id: PBO:0071075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 77","termid":"PBO:0071075"}


id: FYPO:0001166
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing fructose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on fructose carbon source","synonyms":[{"name":"normal cell population growth on fructose carbon source","type":"exact"},{"name":"normal vegetative cell population growth on fructose carbon source","type":"exact"}],"termid":"FYPO:0001166"}


id: FYPO:0003387
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of catalase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal catalase activity","termid":"FYPO:0001104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000002","FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0005447","FYPO:0000707"],"is_obsolete":false,"name":"decreased catalase activity","synonyms":[{"name":"reduced catalase activity","type":"exact"}],"termid":"FYPO:0003387"}


id: PR:O74308
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gsf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C15D4.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15D4.02","synonyms":[{"name":"Spom972h-gsf1","type":"exact"}],"termid":"PR:O74308"}


id: PBO:0017461
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_pathogen","termid":"PBO:0017461"}


id: GO:0010563
data:
  {"annotated_genes":["SJAG_03940","SJAG_01906","SJAG_03170","SJAG_00053","SJAG_02380","SJAG_05314","SJAG_04422","SJAG_00685","SJAG_01187"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92418,60013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[75038,78092],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[113427,117543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[120071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[114804,111777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"negatively_regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0010563","terms_by_termid":{"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1905707":null,"GO:2001211":null}}


id: GO:0015761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which mannose is transported across a lipid bilayer, from one side of a membrane to the other. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"mannose transmembrane transport","synonyms":[{"name":"mannose transport","type":"related"}],"termid":"GO:0015761"}


id: FYPO:0002566
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000458"},{"relation_name":"is_a","term_name":"abolished histone methylation during vegetative growth","termid":"FYPO:0002565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished histone H3-K9 methylation during vegetative growth","synonyms":[{"name":"abolished histone H3 K9 methylation during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 methylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K9me during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K9 methylation during vegetative growth","type":"exact"},{"name":"histone H3-K9 methylation abolished during vegetative growth","type":"exact"},{"name":"histone H3-K9 methylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002566"}


id: FYPO:0000423
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of endocytosis is decreased. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis during vegetative growth","termid":"FYPO:0000034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased rate of endocytosis during vegetative growth","synonyms":[{"name":"decreased rate of actin-mediated endocytosis during vegetative growth","type":"exact"},{"name":"decreased rate of endocytosis during mitotic cell cycle","type":"related"},{"name":"decreased rate of protein internalization during vegetative growth","type":"narrow"},{"name":"endocytosis: decreased rate during vegetative growth","type":"related"},{"name":"reduced rate of endocytosis during vegetative growth","type":"exact"}],"termid":"FYPO:0000423"}


id: PBO:0055499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2933","termid":"PBO:0055499"}


id: MONDO:0021218
data:
  {"annotated_genes":["SJAG_01156"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032747"}]},"cv_name":"mondo","definition":"A neoplasm (disease) that involves the placenta.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"placenta disorder","termid":"MONDO:0005917"},{"relation_name":"is_a","term_name":"tumor of uterus","termid":"MONDO:0021353"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01156":null},"genotype_count":0,"is_obsolete":false,"name":"placenta neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0524541","MEDGEN:105551","NCIT:C4858"],"synonyms":[{"name":"neoplasm of placenta","type":"exact"},{"name":"neoplasm of the placenta","type":"exact"},{"name":"placenta neoplasm (disease)","type":"exact"},{"name":"placenta neoplasms","type":"exact"},{"name":"placenta tumor","type":"exact"},{"name":"placenta tumors","type":"exact"},{"name":"placenta tumour","type":"exact"},{"name":"placenta tumours","type":"exact"},{"name":"placental neoplasm","type":"exact"},{"name":"placental tumor","type":"exact"},{"name":"placental tumors","type":"exact"},{"name":"placental tumour","type":"exact"},{"name":"placental tumours","type":"exact"},{"name":"trophoblastic tumor placental site","type":"related"},{"name":"trophoblastic tumour placental site","type":"related"},{"name":"tumor of placenta","type":"exact"},{"name":"tumor of the placenta","type":"exact"},{"name":"tumour of placenta","type":"exact"},{"name":"tumour of the placenta","type":"exact"}],"termid":"MONDO:0021218","terms_by_termid":{"MONDO:0032747":null},"xrefs":{"Monarch":{"xref_id":"0021218"}}}


id: PBO:0091092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane V-ATPase assembly factor Pkr1","termid":"PBO:0091092"}


id: PR:Q10172
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear pore complex protein Nup214 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin cytoskeleton-regulatory complex protein pan1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25G10.09c","secondary_identifiers":["UniProtKB:Q10172"],"synonyms":[{"name":"SPAC25G10.09c","type":"related"},{"name":"Spom972h-NUP214","type":"exact"}],"termid":"PR:Q10172"}


id: PBO:0028331
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_during_mitosis","termid":"PBO:0028331"}


id: PR:O74948
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription initiation factor IIA subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04252","PANTHER:PTHR10966:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor IIA subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC553.11c","secondary_identifiers":["UniProtKB:O74948"],"synonyms":[{"name":"Spom972h-GTF2A2","type":"exact"},{"name":"general transcription factor IIA subunit 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription initiation factor IIA small chain (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74948"}


id: GO:0102889
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = beta-elemene + diphosphoric acid.","definition_xrefs":["MetaCyc:RXN-8432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"beta-elemene synthase activity","termid":"GO:0102889"}


id: PBO:0086414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI protein; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively; YAR066W has a paralog, YHR214W, that arose from a segmental duplication","termid":"PBO:0086414"}


id: GO:1904090
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of peptidase inhibitor activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000088","GOC:bhm","PMID:20860624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"peptidase inhibitor complex","synonyms":[{"name":"Cathepsin-B - cystatin-A complex","type":"narrow"}],"termid":"GO:1904090"}


id: FYPO:0005438
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA/DNA annealing activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000654","FYPO:0000653","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"abnormal DNA/DNA annealing activity","termid":"FYPO:0005438"}


id: PBO:0060858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 4","termid":"PBO:0060858"}


id: GO:0033708
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH, and (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate + NAD+ = 2-oxoadipate + CO2 + NADH + H+.","definition_xrefs":["EC:1.1.1.286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isocitrate-homoisocitrate dehydrogenase activity","synonyms":[{"name":"PH1722","type":"related"},{"name":"homoisocitrate-isocitrate dehydrogenase activity","type":"related"},{"name":"isocitrate(homoisocitrate):NAD+ oxidoreductase (decarboxylating) activity","type":"related"}],"termid":"GO:0033708"}


id: GO:0072744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichodermin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to ether","termid":"GO:0071362"},{"relation_name":"is_a","term_name":"response to trichodermin","termid":"GO:1901324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to trichodermin","termid":"GO:0072744"}


id: GO:0021540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the corpus callosum are generated and organized. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres.","definition_xrefs":["ISBN:0838580343","GOC:cls","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system projection neuron axonogenesis","termid":"GO:0021952"},{"relation_name":"part_of","term_name":"corpus callosum development","termid":"GO:0022038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"corpus callosum morphogenesis","termid":"GO:0021540"}


id: PBO:0040297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP2B1 antisense RNA 1","termid":"PBO:0040297"}


id: GO:0006123
data:
  {"annotated_genes":["SJAG_02504","SJAG_07007","SJAG_01077","SJAG_01190","SJAG_MIT04","SJAG_01355","SJAG_00976","SJAG_MIT20","SJAG_05629","SJAG_02744","SJAG_MIT13"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62775,73792,76204,78398,80824,110324,116288,117520,121113,121135,121165],"is_not":false,"summary":null,"term":"GO:0006123"}]},"cv_name":"biological_process","definition":"The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic electron transport chain","termid":"GO:0019646"},{"relation_name":"part_of","term_name":"mitochondrial ATP synthesis coupled electron transport","termid":"GO:0042775"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_02504":null,"SJAG_02744":null,"SJAG_05629":null,"SJAG_07007":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"mitochondrial electron transport, cytochrome c to oxygen","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"complex IV (reduction of O2)","type":"related"}],"termid":"GO:0006123","terms_by_termid":{"GO:0006123":null}}


id: GO:0003319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cardioblast toward the midline that contributes to the initial appearance of the heart rudiment.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration to the midline involved in heart development","termid":"GO:0003318"},{"relation_name":"part_of","term_name":"heart rudiment formation","termid":"GO:0003315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast migration to the midline involved in heart rudiment formation","termid":"GO:0003319"}


id: PBO:0035698
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cytokinesis_checkpoint","termid":"PBO:0035698"}


id: GO:0003789
data:
  {"annotated_genes":["SJAG_03025"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94554],"is_not":false,"summary":null,"term":"GO:0003789"}]},"cv_name":"molecular_function","definition":"Binding to an actin subunit and promoting its dissociation from an actin filament by a local change in actin subunit conformation and orientation, and severing of filaments.","definition_xrefs":["PMID:23727096","PMID:11812157","PMID:23395798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex destabilizing activity","termid":"GO:0140776"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03025":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"actin filament severing activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin depolymerizing activity","type":"exact"}],"termid":"GO:0003789","terms_by_termid":{"GO:0003789":null}}


id: PBO:0057725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR1302-9 host gene","termid":"PBO:0057725"}


id: GO:0039570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT2 (signal transducer and activator of transcription-2) activity by retaining STAT2 in the cytoplasm, so STAT2 is unable to translocate to the nucleus to activate transcription of its target genes.","definition_xrefs":["PMID:14557668"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host STAT2 activity by negative regulation of STAT protein import into nucleus (obsolete GO:0039570)","synonyms":[{"name":"cytoplasmic sequestering of STAT2","type":"exact"},{"name":"cytoplasmic sequestration of STAT2","type":"exact"}],"termid":"GO:0039570"}


id: GO:0008144
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a drug, a naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism;typically used in the diagnosis, prevention, or treatment of disease.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete drug binding (obsolete GO:0008144)","termid":"GO:0008144"}


id: PBO:0080912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YWHAQ pseudogene 1","termid":"PBO:0080912"}


id: PBO:0112984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Accessory subunit of DNA polymerase zeta (pol zeta); involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; may be involved in meiosis; forms a complex with Rev3p, Pol31p and Pol32p","termid":"PBO:0112984"}


id: PBO:0002457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein Rec10","termid":"PBO:0002457"}


id: PBO:0053451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 399","termid":"PBO:0053451"}


id: FYPO:0009016
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which a larger than normal proportion of cells is viable when grown with xylose as carbon source. In High Throughput Phenotyping this is typically assessed using phloxine as a dye.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population viability","termid":"FYPO:0009008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"increased cell population viability on xylose carbon source","synonyms":[{"name":"increased cell population viability during vegetative growth on xylose carbon source","type":"exact"}],"termid":"FYPO:0009016"}


id: MONDO:0040676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from the great vessels.","definition_xrefs":["NCIT:C4575"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular cancer","termid":"MONDO:0002095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"great vessel cancer","secondary_identifiers":["MEDGEN:777096","UMLS:C3665405"],"synonyms":[{"name":"cancer of great vessel of heart","type":"exact"},{"name":"great vessel cancer","type":"exact"},{"name":"great vessel of heart cancer","type":"exact"},{"name":"malignant great vessel neoplasm","type":"exact"},{"name":"malignant great vessel of heart neoplasm","type":"exact"},{"name":"malignant great vessel tumor","type":"exact"},{"name":"malignant great vessel tumour","type":"exact"},{"name":"malignant neoplasm of great vessel of heart","type":"exact"}],"termid":"MONDO:0040676","xrefs":{"Monarch":{"xref_id":"0040676"}}}


id: FYPO:0006976
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during the meiotic cell cycle is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level","termid":"FYPO:0000840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal RNA level during meiotic cell cycle","synonyms":[{"name":"normal RNA accumulation during meiotic cell cycle","type":"related"},{"name":"normal cellular RNA level during meiotic cell cycle","type":"exact"},{"name":"normal mRNA level during meiotic cell cycle","type":"narrow"},{"name":"normal transcript level during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006976"}


id: PBO:0041453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 10 open reading frame 62","termid":"PBO:0041453"}


id: MONDO:0016800
data:
  {"annotated_genes":["SJAG_01589","SJAG_01890","SJAG_00547","SJAG_00404","SJAG_01417"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012557"},{"annotations":[87911,87912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014775"},{"annotations":[87665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008922"},{"annotations":[87776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014804"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn mitochondrial metabolism disorder","termid":"MONDO:0004069"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00404":null,"SJAG_00547":null,"SJAG_01417":null,"SJAG_01589":null,"SJAG_01890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial membrane transport disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:254827","MEDGEN:1842228","GARD:20761","UMLS:C5680718","icd11.foundation:1340308055"],"termid":"MONDO:0016800","terms_by_termid":{"MONDO:0008922":null,"MONDO:0012557":null,"MONDO:0014775":null,"MONDO:0014804":null},"xrefs":{"Monarch":{"xref_id":"0016800"}}}


id: GO:0007474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which the area of a imaginal disc-derived wing that will form a wing vein is specified.","definition_xrefs":["GOC:isa_complete","GOC:mtg_sensu","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing morphogenesis","termid":"GO:0007476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc-derived wing vein specification","synonyms":[{"name":"wing vein specification","type":"exact"}],"termid":"GO:0007474"}


id: MONDO:1012123
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypotrichosis with thymic aplasia, non-human animal","termid":"MONDO:1011739"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypotrichosis with thymic aplasia, domestic cat","secondary_identifiers":["OMIA:000544-9685"],"termid":"MONDO:1012123","xrefs":{"Monarch":{"xref_id":"1012123"}}}


id: MONDO:0002922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any skin disease that is pyegenic.","definition_xrefs":["Wikipedia:Pyoderma"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"dermatitis","termid":"MONDO:0002406"},{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pyoderma","secondary_identifiers":["SCTID:70759006","UMLS:C0034212","ICD9:686.0","ICD9:686.00","MEDGEN:18783","DOID:4223","ICD10CM:L08.0","ICD9:686.09","MESH:D011711","icd11.foundation:1991248382"],"termid":"MONDO:0002922","xrefs":{"Monarch":{"xref_id":"0002922"}}}


id: MONDO:0030702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune form of atherosclerosis.","definition_xrefs":["MONDO:patterns/autoimmune"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disorder of cardiovascular system","termid":"MONDO:0000603"},{"relation_name":"is_a","term_name":"atherosclerosis","termid":"MONDO:0005311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune atherosclerosis","secondary_identifiers":["DOID:0040096"],"termid":"MONDO:0030702","xrefs":{"Monarch":{"xref_id":"0030702"}}}


id: PBO:0070804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 34","termid":"PBO:0070804"}


id: PBO:0046504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F1-regulated inhibitor of cell death","termid":"PBO:0046504"}


id: PBO:0070913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 21","termid":"PBO:0070913"}


id: PBO:0081364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 200","termid":"PBO:0081364"}


id: PBO:0084010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogenin glucosyltransferase; self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; SWAT-GFP and mCherry fusion proteins localize to the cell periphery and vacuole respectively; similar to mammalian glycogenin; GLG1 has a paralog, GLG2, that arose from the whole genome duplication","termid":"PBO:0084010"}


id: MONDO:0002911
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neuroglial tumor that arises from the brain stem.","definition_xrefs":["NCIT:C8501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brainstem cancer","termid":"MONDO:0002912"},{"relation_name":"is_a","term_name":"brain glioma","termid":"MONDO:0005499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"brain stem glioma","secondary_identifiers":["SCTID:444545003","UMLS:C0677865","DOID:4202","EFO:1000142","MEDGEN:195650"],"synonyms":[{"name":"brain stem glioma","type":"exact"},{"name":"brain stem neuroglial neoplasm","type":"exact"},{"name":"brain stem neuroglial tumor","type":"exact"},{"name":"brain stem neuroglial tumour","type":"exact"},{"name":"brainstem glioma","type":"exact"},{"name":"brainstem malignant glioma","type":"exact"},{"name":"brainstem neuroglial neoplasm","type":"exact"},{"name":"brainstem neuroglial tumor","type":"exact"},{"name":"brainstem neuroglial tumour","type":"exact"},{"name":"diffuse brainstem glioma","type":"exact"},{"name":"glioma of brain stem","type":"exact"},{"name":"glioma of brainstem","type":"exact"},{"name":"glioma of the brain stem","type":"exact"},{"name":"glioma of the brainstem","type":"exact"},{"name":"malignant glioma of brainstem","type":"exact"}],"termid":"MONDO:0002911","xrefs":{"Monarch":{"xref_id":"0002911"}}}


id: MONDO:0024889
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign epithelial neoplasm of the female reproductive system arising from mesonephric remnants.","definition_xrefs":["NCIT:C4294"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign reproductive system neoplasm","termid":"MONDO:0000383"},{"relation_name":"is_a","term_name":"kidney benign neoplasm","termid":"MONDO:0002513"},{"relation_name":"is_a","term_name":"mesonephric neoplasm","termid":"MONDO:0024888"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"benign mesonephroma","secondary_identifiers":["DOID:2616","UMLS:C0334530","ICDO:9110/0","MEDGEN:87259"],"synonyms":[{"name":"Mesonephroma, benign","type":"exact"},{"name":"Mesonephroma, benign (morphologic abnormality)","type":"exact"},{"name":"Wolffian duct adenoma","type":"exact"},{"name":"benign Mesonephroma","type":"exact"},{"name":"benign mesonephric neoplasm","type":"exact"},{"name":"mesonephric adenoma","type":"exact"},{"name":"mesonephric duct adenoma","type":"exact"},{"name":"mesonephric neoplasm, benign","type":"exact"}],"termid":"MONDO:0024889","xrefs":{"Monarch":{"xref_id":"0024889"}}}


id: MONDO:0957452
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"segmental arterial mediolysis","secondary_identifiers":["icd11.foundation:1160127418","UMLS:C4517096","MEDGEN:1387331","Orphanet:645350"],"termid":"MONDO:0957452","xrefs":{"Monarch":{"xref_id":"0957452"}}}


id: GO:0003032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which an oxygen stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"response to oxygen levels","termid":"GO:0070482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of oxygen","termid":"GO:0003032"}


id: PBO:0048434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,4-alpha-glucan branching enzyme 1","termid":"PBO:0048434"}


id: PBO:0038968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-aminoethanethiol dioxygenase","termid":"PBO:0038968"}


id: GO:0033898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the endonucleolytic cleavage to 2',3'-cyclic nucleotides.","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete Bacillus subtilis ribonuclease activity (obsolete GO:0033898)","synonyms":[{"name":"proteus mirabilis RNase activity","type":"exact"},{"name":"ribonucleate nucleotido-2'-transferase (cyclizing) activity","type":"broad"}],"termid":"GO:0033898"}


id: PATO:0001969
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin.","definition_xrefs":["Hickey:1988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched","termid":"PATO:0000402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craspedodromous","termid":"PATO:0001969"}


id: MONDO:0001033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal ulcer","termid":"MONDO:0004577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"mycotic corneal ulcer","secondary_identifiers":["SCTID:397977001","DOID:10440","UMLS:C0155071","ICD10CM:H16.06","MEDGEN:509769","icd11.foundation:1756043578","ICD9:370.05"],"termid":"MONDO:0001033","xrefs":{"Monarch":{"xref_id":"0001033"}}}


id: GO:0140023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an amine group from an adenosine to produce inosine within a tRNA molecule.","definition_xrefs":["PMID:27974624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"tRNA adenosine deamination to inosine","synonyms":[{"name":"A-to-I tRNA editing","type":"exact"}],"termid":"GO:0140023"}


id: GO:1901280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-ribose 5-phosphate.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00293","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribose phosphate biosynthetic process","termid":"GO:0046390"},{"relation_name":"is_a","term_name":"D-ribose 5-phosphate metabolic process","termid":"GO:1901278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"D-ribose 5-phosphate biosynthetic process","synonyms":[{"name":"D-ribose 5-phosphate anabolism","type":"exact"},{"name":"D-ribose 5-phosphate biosynthesis","type":"exact"},{"name":"D-ribose 5-phosphate formation","type":"exact"},{"name":"D-ribose 5-phosphate synthesis","type":"exact"}],"termid":"GO:1901280"}


id: PBO:0070063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 20, pseudogene","termid":"PBO:0070063"}


id: PBO:0080909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta","termid":"PBO:0080909"}


id: PBO:0078184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 1 (pseudogene)","termid":"PBO:0078184"}


id: GO:0042868
data:
  {"annotated_genes":["SJAG_00266","SJAG_01176","SJAG_01717","SJAG_03745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110008],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0060195"},{"annotations":[108296,72577,90383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071040"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01176":null,"SJAG_01717":null,"SJAG_03745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antisense RNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"antisense RNA metabolism","type":"exact"}],"termid":"GO:0042868","terms_by_termid":{"GO:0060195":null,"GO:0071040":null}}


id: FYPO:0000491
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial genome maintenance does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial genome maintenance","termid":"FYPO:0000490"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abolished mitochondrial genome maintenance","synonyms":[{"name":"abolished mitochondrial genome maintenance during mitotic cell cycle","type":"related"},{"name":"absent mitochondrial genome maintenance","type":"exact"},{"name":"mitochondrial genome maintenance abolished","type":"exact"},{"name":"mitochondrial genome maintenance abolished during vegetative growth","type":"exact"},{"name":"mitochondrial genome maintenance: absent","type":"related"}],"termid":"FYPO:0000491"}


id: MONDO:0970998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"auroneurodental syndrome","secondary_identifiers":["MEDGEN:1861965","UMLS:C5889721","OMIM:620830"],"termid":"MONDO:0970998","xrefs":{"Monarch":{"xref_id":"0970998"}}}


id: MONDO:0007616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibula, recurrent dislocation of head of","secondary_identifiers":["OMIM:135800","MESH:C565011","MEDGEN:338206","UMLS:C1851099"],"synonyms":[{"name":"fibula, recurrent dislocation of head of","type":"exact"}],"termid":"MONDO:0007616","xrefs":{"Monarch":{"xref_id":"0007616"}}}


id: PBO:0081804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 733, pseudogene","termid":"PBO:0081804"}


id: GO:0102852
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:3-2-16:0-phosphatidylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:3-2-16:0-phosphatidylglycerol desaturase activity (obsolete GO:0102852)","termid":"GO:0102852"}


id: MONDO:0011952
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 7","secondary_identifiers":["DOID:0060199","GARD:10500","UMLS:C1842674","MESH:C564300","MEDGEN:334136","OMIM:608031"],"synonyms":[{"name":"ALS7","type":"exact"},{"name":"amyotrophic lateral sclerosis 7","type":"exact"}],"termid":"MONDO:0011952","xrefs":{"Monarch":{"xref_id":"0011952"}}}


id: PBO:0027898
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_siRNA_level","termid":"PBO:0027898"}


id: FYPO:0005431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of mitotic recombination at one or more recombination hotspots is decreased to the background level. The basal rate of recombination (i.e. away from hotspots) may remain normal or may be decreased.","definition_xrefs":["PMID:12019258","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitotic recombination","termid":"FYPO:0000482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000293","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased mitotic recombination at hotspot","synonyms":[{"name":"decreased mitotic recombination at hotspot during mitotic cell cycle","type":"related"},{"name":"decreased mitotic recombination at hotspot during vegetative growth","type":"exact"},{"name":"decreased mitotic recombination at recombination hotspot","type":"exact"},{"name":"hotspot-specific decreased mitotic recombination","type":"exact"},{"name":"reduced mitotic recombination at hotspot","type":"exact"}],"termid":"FYPO:0005431"}


id: PR:000027558
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A that is a translation product of the Schizosaccharomyces pombe 972h- hta1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-alpha","synonyms":[{"name":"H2A.1","type":"broad"},{"name":"hta1","type":"exact"}],"termid":"PR:000027558"}


id: GO:0004029
data:
  {"annotated_genes":["SJAG_00482","SJAG_03786","SJAG_02961"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77999,80550],"is_not":false,"summary":null,"term":"GO:0004029"},{"annotations":[102888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140087"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: an aldehyde + H2O + NAD+ = a carboxylate + 2 H+ + NADH.","definition_xrefs":["RHEA:16185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase [NAD(P)+] activity","termid":"GO:0004030"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00482":null,"SJAG_02961":null,"SJAG_03786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"aldehyde dehydrogenase (NAD+) activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["UM-BBD_reactionID:r0023","MetaCyc:ALDHDEHYDROG-RXN","Reactome:R-HSA-6808496","Reactome:R-HSA-71723","Wikipedia:Aldehyde_dehydrogenase_(NAD+)","Reactome:R-HSA-6808487","Reactome:R-HSA-389609","Reactome:R-HSA-6813749","Reactome:R-HSA-71691","Reactome:R-HSA-5696091","Reactome:R-HSA-5692261","EC:1.2.1.3","UM-BBD_reactionID:r0003","UM-BBD_reactionID:r0605","Reactome:R-HSA-380608"],"synonyms":[{"name":"CoA-independent aldehyde dehydrogenase activity","type":"related"},{"name":"NAD-aldehyde dehydrogenase activity","type":"related"},{"name":"NAD-dependent 4-hydroxynonenal dehydrogenase activity","type":"related"},{"name":"NAD-dependent aldehyde dehydrogenase activity","type":"related"},{"name":"NAD-linked aldehyde dehydrogenase activity","type":"related"},{"name":"aldehyde dehydrogenase (NAD+)","type":"related"},{"name":"aldehyde:NAD+ oxidoreductase activity","type":"related"},{"name":"m-methylbenzaldehyde dehydrogenase activity","type":"related"},{"name":"propionaldehyde dehydrogenase activity","type":"related"}],"termid":"GO:0004029","terms_by_termid":{"GO:0004029":null,"GO:0140087":null}}


id: PR:Q09794
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A CAD protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00290","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein ura1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22G7.06c","secondary_identifiers":["UniProtKB:Q09794"],"synonyms":[{"name":"Spom972h-CAD","type":"exact"}],"termid":"PR:Q09794"}


id: GO:0001838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenesis of an embryonic epithelium into a tube-shaped structure.","definition_xrefs":["GOC:dph","ISBN:0824072820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial tube formation","termid":"GO:0072175"},{"relation_name":"part_of","term_name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic epithelial tube formation","termid":"GO:0001838"}


id: PBO:0038753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 3","termid":"PBO:0038753"}


id: PBO:0039637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminopeptidase O (putative)","termid":"PBO:0039637"}


id: MONDO:0007158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal arthrogryposis type 5 is an inherited developmental defect syndrome characterized by multiple congenital contractures of limbs, without primary neurologic and/or muscle disease that affects limb function, and ocular anomalies (ptosis, external ophtalmoplegia and/or strabismus). Intelligence is normal.","definition_xrefs":["Orphanet:1154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis- oculomotor limitation-electroretinal anomalies syndrome","secondary_identifiers":["UMLS:C1862472","SCTID:715217004","DOID:0111608","GARD:4047","MEDGEN:350678","OMIM:108145"],"synonyms":[{"name":"Arthogryposis with oculomotor limitation and electroretinal abnormalities","type":"related"},{"name":"DA5","type":"related"},{"name":"arthrogryposis ophthalmoplegia retinopathy","type":"related"},{"name":"arthrogryposis with oculomotor limitation and electroretinal abnormalities","type":"related"},{"name":"arthrogryposis, distal, type 2B","type":"related"},{"name":"arthrogryposis, distal, type 5","type":"related"},{"name":"arthrogryposis- oculomotor limitation-electroretinal anomalies syndrome","type":"exact"},{"name":"arthrogryposis-oculomotor limitation-electroretinal anomalies syndrome","type":"related"},{"name":"distal arthrogryposis type 5","type":"exact"},{"name":"distal arthrogryposis type IIB","type":"exact"},{"name":"distal arthrogryposis with ophthalmoplegia","type":"exact"},{"name":"oculomelic amyoplasia","type":"exact"}],"termid":"MONDO:0007158","xrefs":{"Monarch":{"xref_id":"0007158"}}}


id: MONDO:0054847
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epilepsy, familial adult myoclonic","termid":"MONDO:0000160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy, familial adult myoclonic, 7","secondary_identifiers":["DOID:0111694","OMIM:618075","MEDGEN:1648435","UMLS:C4748080"],"synonyms":[{"name":"FAME7","type":"related"},{"name":"benign Adult Familial myoclonic epilepsy 7","type":"related"},{"name":"cortical myoclonic tremor with epilepsy, Familial, 7","type":"related"},{"name":"epilepsy, FAMILIAL ADULT myoclonic, 7","type":"related"}],"termid":"MONDO:0054847","xrefs":{"Monarch":{"xref_id":"0054847"}}}


id: FYPO:0001231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, and structure of the cell cortex is normal (i.e. indistinguishable from wild type). The cell cortex is the region of a cell that lies just beneath the plasma membrane.","definition_xrefs":["PomBase:mah","GO:0005938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal cell cortex morphology","termid":"FYPO:0001231"}


id: MONDO:0045043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the broad ligament of uterus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligament disorder","termid":"MONDO:0045044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disorder of uterine broad ligament","secondary_identifiers":["UMLS:C0404479","MEDGEN:589074","SCTID:237062006"],"synonyms":[{"name":"broad ligament of uterus disease","type":"exact"},{"name":"broad ligament of uterus disease or disorder","type":"exact"},{"name":"disease of broad ligament of uterus","type":"exact"},{"name":"disease or disorder of broad ligament of uterus","type":"exact"},{"name":"disorder of broad ligament","type":"exact"},{"name":"disorder of broad ligament of uterus","type":"exact"}],"termid":"MONDO:0045043","xrefs":{"Monarch":{"xref_id":"0045043"}}}


id: PBO:0060772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B6","termid":"PBO:0060772"}


id: PBO:0060606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap binding protein subunit 2","termid":"PBO:0060606"}


id: MOD:01847
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-cysteine sulfinyl phosphate.","definition_xrefs":["PubMed:16565085","RESID:AA0557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur oxygenated L-cysteine","termid":"MOD:00708"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-cysteine sulfinyl phosphate","synonyms":[{"name":"(2R)-2-amino-3-[(phosphonooxy)sulfinyl]propanoic acid","type":"exact"},{"name":"L-cysteine sulfinyl phosphate","type":"exact"},{"name":"cysteine sulfinic phosphoryl ester","type":"exact"}],"termid":"MOD:01847"}


id: PBO:0058994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAX dimerization protein MLX","termid":"PBO:0058994"}


id: MONDO:0016695
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well-differentiated (WHO grade II), diffusely infiltrating neuroglial tumor, typically located in the cerebral hemispheres. It is composed predominantly of cells which morphologically resemble oligodendroglia. The neoplastic cells have rounded homogeneous nuclei and, on paraffin sections, a swollen, clear cytoplasm ('honeycomb' appearance). (Adapted from WHO)","definition_xrefs":["NCIT:C3288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligodendroglial tumor","termid":"MONDO:0018744"},{"relation_name":"is_a","term_name":"grade II glioma","termid":"MONDO:0021639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"oligodendroglioma","secondary_identifiers":["MedDRA:10030286","DOID:3181","MEDGEN:45190","NANDO:2200089","ONCOTREE:ODG","EFO:0000632","MESH:D009837","Orphanet:251627","UMLS:C0028945","ICDO:9450/3","GARD:9953"],"synonyms":[{"name":"WHO grade II oligodendroglial neoplasm","type":"exact"},{"name":"WHO grade II oligodendroglial tumor","type":"exact"},{"name":"WHO grade II oligodendroglial tumour","type":"exact"},{"name":"oligodendroglial neoplasm","type":"broad"},{"name":"oligodendroglial tumor","type":"broad"},{"name":"oligodendroglial tumour","type":"broad"},{"name":"oligodendroglioma","type":"exact"},{"name":"well differentiated oligodendroglial tumor","type":"exact"},{"name":"well differentiated oligodendroglial tumour","type":"exact"},{"name":"well differentiated oligodendroglioma","type":"exact"}],"termid":"MONDO:0016695","xrefs":{"Monarch":{"xref_id":"0016695"}}}


id: PBO:0048981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-patch domain containing 4 (gene/pseudogene)","termid":"PBO:0048981"}


id: MONDO:0013857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alar cleft, isolated","secondary_identifiers":["MEDGEN:766390","OMIM:614687","UMLS:C3553476"],"synonyms":[{"name":"alar cleft, isolated","type":"exact"}],"termid":"MONDO:0013857","xrefs":{"Monarch":{"xref_id":"0013857"}}}


id: PBO:0055338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2766","termid":"PBO:0055338"}


id: PBO:0090391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome export adaptor Nmd3","termid":"PBO:0090391"}


id: PBO:0078188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 4-1","termid":"PBO:0078188"}


id: FYPO:0008402
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which septum assembly happens during the first division of the meiotic cell cycle.","definition_xrefs":["PMID:16787941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during meiotic cell cycle","termid":"FYPO:0007260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"septum assembly during meiosis I","termid":"FYPO:0008402"}


id: GO:0048565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"digestive system development","termid":"GO:0055123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"digestive tract development","synonyms":[{"name":"gut development","type":"broad"},{"name":"intestinal development","type":"narrow"},{"name":"intestine development","type":"narrow"}],"termid":"GO:0048565"}


id: MONDO:0003822
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A papillary neoplasm of the urinary bladder in which the transitional cells form papillae. The papillary structures exhibit minimal architectural distortion and minimal atypia. Mitoses are infrequent. Patients are at an increased risk of developing new papillary lesions. Occasionally, the new lesions are urothelial carcinomas.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bladder papillary urothelial neoplasm","termid":"MONDO:0003442"},{"relation_name":"is_a","term_name":"urinary tract non-invasive transitional cell neoplasm","termid":"MONDO:0003755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-invasive bladder papillary urothelial neoplasm","secondary_identifiers":["UMLS:C1518358","MEDGEN:309424","DOID:6239","NCIT:C39831"],"synonyms":[{"name":"bladder PUNLMP","type":"exact"},{"name":"bladder papillary neoplasm of low malignant potential","type":"exact"},{"name":"non-invasive bladder papillary urothelial neoplasm","type":"exact"},{"name":"papillary urothelial neoplasm of low malignant potential","type":"exact"}],"termid":"MONDO:0003822","xrefs":{"Monarch":{"xref_id":"0003822"}}}


id: GO:0160141
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(955/2504/2580) in 23S rRNA = pseudouridine(955/2504/2580) in 23S rRNA.","definition_xrefs":["RHEA:42528","EC:5.4.99.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA pseudouridine synthase activity","termid":"GO:0120159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"23S rRNA pseudouridine(955/2504/2580) synthase activity","termid":"GO:0160141"}


id: PBO:0108620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGBP1 pseudogene 3","termid":"PBO:0108620"}


id: GO:1900116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any negative regulation of signal transduction that takes place in extracellular region.","definition_xrefs":["GOC:TermGenie","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"extracellular regulation of signal transduction","termid":"GO:1900115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"extracellular negative regulation of signal transduction","synonyms":[{"name":"down regulation of signal transduction in extracellular region","type":"exact"},{"name":"down-regulation of signal transduction in extracellular region","type":"exact"},{"name":"downregulation of signal transduction in extracellular region","type":"exact"},{"name":"extracellular inhibition of signaling pathway","type":"narrow"},{"name":"inhibition of signal transduction in extracellular region","type":"narrow"},{"name":"negative regulation of signaling pathway in extracellular region","type":"exact"},{"name":"negative regulation of signalling pathway in extracellular region","type":"exact"}],"termid":"GO:1900116"}


id: PBO:0091809
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. octosporus rsv1","termid":"PBO:0091809"}


id: MONDO:0011942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic lupus erythematosus with nephritis, susceptibility to, 1","secondary_identifiers":["UMLS:C1842757","MEDGEN:335794","OMIM:607965"],"synonyms":[{"name":"SLEN1","type":"exact"},{"name":"systemic lupus erythematosus with nephritis, susceptibility to, 1","type":"exact"}],"termid":"MONDO:0011942","xrefs":{"Monarch":{"xref_id":"0011942"}}}


id: GO:0052247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism within a second organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive energy taxis in other organism involved in symbiotic interaction (obsolete GO:0052247)","synonyms":[{"name":"positive energy taxis in other organism during symbiotic interaction","type":"related"},{"name":"positive energy taxis within other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052247"}


id: GO:0010214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seed coat development","termid":"GO:0010214"}


id: MONDO:0100353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with herpesvirus-7.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent","PMID:28545483"],"direct_ancestors":[{"relation_name":"is_a","term_name":"roseolovirus infectious disease","termid":"MONDO:0005949"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHV-7 infectious disease","synonyms":[{"name":"HHV-7 infection","type":"exact"},{"name":"herpesvirus-7 infectious disease","type":"exact"}],"termid":"MONDO:0100353","xrefs":{"Monarch":{"xref_id":"0100353"}}}


id: PBO:0081604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 528","termid":"PBO:0081604"}


id: PBO:0034408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-localizes_to_(obsolete_localizes_to)","termid":"PBO:0034408"}


id: PBO:0052883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 9-6","termid":"PBO:0052883"}


id: PBO:0064372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral myelin protein 22","termid":"PBO:0064372"}


id: GO:0032702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-19 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-19 production","termid":"GO:0032662"},{"relation_name":"negatively_regulates","term_name":"interleukin-19 production","termid":"GO:0032622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-19 production","secondary_identifiers":["GO:0045385"],"synonyms":[{"name":"down regulation of interleukin-19 production","type":"exact"},{"name":"down-regulation of interleukin-19 production","type":"exact"},{"name":"downregulation of interleukin-19 production","type":"exact"},{"name":"inhibition of interleukin-19 production","type":"narrow"},{"name":"negative regulation of IL-19 production","type":"exact"},{"name":"negative regulation of interleukin-19 biosynthetic process","type":"narrow"}],"termid":"GO:0032702"}


id: GO:0071577
data:
  {"annotated_genes":["SJAG_01078","SJAG_02968","SJAG_03528","SJAG_00222","SJAG_00328","SJAG_01803","SJAG_04185","SJAG_01990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80251],"is_not":false,"summary":null,"term":"GO:0071577"},{"annotations":[116403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140147"},{"annotations":[115269,106192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071578"},{"annotations":[95782,95783],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140209"},{"annotations":[76694,106332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904257"}]},"cv_name":"biological_process","definition":"A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transport","termid":"GO:0006829"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00222":null,"SJAG_00328":null,"SJAG_01078":null,"SJAG_01803":null,"SJAG_01990":null,"SJAG_02968":null,"SJAG_03528":null,"SJAG_04185":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"zinc ion transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-435354"],"synonyms":[{"name":"zinc II ion transmembrane transport","type":"exact"},{"name":"zinc ion membrane transport","type":"exact"},{"name":"zinc transmembrane transport","type":"exact"}],"termid":"GO:0071577","terms_by_termid":{"GO:0071577":null,"GO:0071578":null,"GO:0140147":null,"GO:0140209":null,"GO:1904257":null}}


id: GO:0070431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of a ligand (such as a bacterial peptidoglycan) to a cytoplasmic nucleotide-binding oligomerization domain containing 2 (NOD2) protein receptor, and ending with regulation of a downstream cellular process.","definition_xrefs":["GOC:add","PMID:18585455","PMID:17944960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0035872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"nucleotide-binding oligomerization domain containing 2 signaling pathway","synonyms":[{"name":"NOD2 signaling pathway","type":"exact"},{"name":"nucleotide-binding oligomerization domain containing 2 signalling pathway","type":"exact"}],"termid":"GO:0070431"}


id: GO:0002302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive CD8-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation involved in immune response","termid":"GO:0002293"},{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell differentiation involved in immune response","synonyms":[{"name":"CD8-positive, alpha-beta T cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta intraepithelial T cell development","type":"related"}],"termid":"GO:0002302"}


id: PBO:0088568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7","termid":"PBO:0088568"}


id: PBO:0036128
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein-protein_interaction_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0036128"}


id: GO:0010811
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules.","definition_xrefs":["GOC:tb","GOC:dph","GOC:pf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-substrate adhesion","termid":"GO:0010810"},{"relation_name":"is_a","term_name":"positive regulation of cell adhesion","termid":"GO:0045785"},{"relation_name":"positively_regulates","term_name":"cell-substrate adhesion","termid":"GO:0031589"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell-substrate adhesion","termid":"GO:0010811"}


id: PBO:0084130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexokinase isoenzyme 2; phosphorylates glucose in cytosol; predominant hexokinase during growth on glucose; represses expression of HXK1, GLK1, induces expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at Ser14 by kinase Snf1p, phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; functions downstream of Sit4p in control of cell cycle, mitochondrial function, oxidative stress resistance, chronological lifespan; has paralog HXK1","termid":"PBO:0084130"}


id: MONDO:0800330
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile myoclonic epilepsy","termid":"MONDO:0009696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"myoclonic epilepsy, juvenile, 2","secondary_identifiers":["MEDGEN:854640","UMLS:C3887932"],"synonyms":[{"name":"EJM2","type":"exact"}],"termid":"MONDO:0800330","xrefs":{"Monarch":{"xref_id":"0800330"}}}


id: PBO:0073616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SID1 transmembrane family member 2","termid":"PBO:0073616"}


id: GO:0006585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine.","definition_xrefs":["ISBN:0198506732","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"dopamine biosynthetic process","termid":"GO:0042416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dopamine biosynthetic process from tyrosine","synonyms":[{"name":"dopamine anabolism from tyrosine","type":"exact"},{"name":"dopamine formation from tyrosine","type":"exact"},{"name":"dopamine synthesis from tyrosine","type":"exact"}],"termid":"GO:0006585"}


id: PBO:0065906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabaptin, RAB GTPase binding effector protein 2","termid":"PBO:0065906"}


id: MONDO:0012324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare partial deletion of the long arm of chromosome 14 characterized by ocular anomalies (anopthalmia/microphthalmia, ptosis, hypertelorism, exophthalmos), pituitary anomalies (pituitary hypoplasia/aplasia with growth hormone deficiency and growth retardation) and hand/foot anomalies (polydactyly, short digits, pes cavus). Other clinical features may include muscular hypotonia, psychomotor development delay/intellectual disability, dysmorphic signs (facial asymmetry, microretrognathia, high-arched palate, ear anomalies), congenital genitourinary malformations, hearing impairment. Smaller 14q22 deletions may have variable expression.","definition_xrefs":["Orphanet:264200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 14","termid":"MONDO:0016912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Frias syndrome","secondary_identifiers":["GARD:2384","OMIM:609640","MESH:C535639","MEDGEN:400621","UMLS:C1864825","Orphanet:2055"],"synonyms":[{"name":"14q22-q23 microdeletion syndrome","type":"exact"},{"name":"14q22q23 microdeletion syndrome","type":"exact"},{"name":"Del(14)(q22q23)","type":"exact"},{"name":"Frias syndrome","type":"exact"},{"name":"Growth deficiency, Facial anomalies, and brachydactyly","type":"related"},{"name":"chromosome 14Q22 deletion syndrome","type":"related"},{"name":"monosomy 14q22-q23","type":"exact"},{"name":"monosomy 14q22q23","type":"exact"}],"termid":"MONDO:0012324","xrefs":{"Monarch":{"xref_id":"0012324"}}}


id: PBO:0065313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 36","termid":"PBO:0065313"}


id: GO:0061321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a garland nephrocyte. A garland nephrocyte is an insect renal cell that filters hemolymph and forms a ring with other garland nephrocytes around the esophagus. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["GOC:sart","CL:0000486","GOC:dph","GOC:mtg_kidney_jan10","PMID:19783135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephrocyte differentiation","termid":"GO:0061319"},{"relation_name":"part_of","term_name":"embryonic development via the syncytial blastoderm","termid":"GO:0001700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"garland nephrocyte differentiation","secondary_identifiers":["GO:0007514"],"synonyms":[{"name":"garland cell differentiation","type":"exact"}],"termid":"GO:0061321"}


id: PBO:0034469
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_DNA_damage_checkpoint_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0034469"}


id: GO:0003794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acute-phase response protein activity (obsolete GO:0003794)","synonyms":[{"name":"acute-phase response protein activity","type":"exact"}],"termid":"GO:0003794"}


id: PBO:0059423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium transporter MRS2","termid":"PBO:0059423"}


id: PBO:0054975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2389","termid":"PBO:0054975"}


id: GO:0044156
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plasma membrane part that forms a specialized region of connection between two host cells or between a host cell and the host extracellular matrix. At a host cell junction, anchoring proteins extend through the host plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host cell plasma membrane","termid":"GO:0020002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell junction","termid":"GO:0044156"}


id: MONDO:0012927
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"1q41q42 microdeletion syndrome is a chromosomal anomaly characterized by a severe developmental delay and/or intellectual disability, typical facial dysmorphic features, brain anomalies, seizures, cleft palate, clubfeet, nail hypoplasia and congenital heart disease.","definition_xrefs":["Orphanet:250999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"holoprosencephaly","termid":"MONDO:0016296"},{"relation_name":"is_a","term_name":"chromosome 1q deletion","termid":"MONDO:0022756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"chromosome 1q41-q42 deletion syndrome","secondary_identifiers":["MEDGEN:382704","GARD:3738","OMIM:612530","DOID:0060412","SCTID:716515000","UMLS:C2675857"],"synonyms":[{"name":"1q41-q42 deletion syndrome","type":"related"},{"name":"1q41-q42 microdeletion syndrome","type":"exact"},{"name":"1q41q42 microdeletion syndrome","type":"exact"},{"name":"Del(1)(q41q42)","type":"exact"},{"name":"chromosome 1q41-q42 deletion syndrome","type":"exact"},{"name":"chromosome 1q41-q42 deletion syndrome, isolated cases","type":"exact"},{"name":"deletion 1q41-q42","type":"related"},{"name":"holoprosencephaly 10","type":"related"},{"name":"monosomy 1q41-q42","type":"exact"},{"name":"monosomy 1q41q42","type":"exact"}],"termid":"MONDO:0012927","xrefs":{"Monarch":{"xref_id":"0012927"}}}


id: PR:O59698
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol-3-phosphate transporter GlpT that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02606","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C36.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.01c","secondary_identifiers":["UniProtKB:O59698"],"synonyms":[{"name":"Spom972h-glpT","type":"exact"}],"termid":"PR:O59698"}


id: PBO:0090875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ferric-chelate reductase","termid":"PBO:0090875"}


id: MONDO:0019902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Monosomy 13q34 is a rare chromosomal anomaly syndrome, resulting from the partial deletion of the long arm of chromosome 13, principally characterized by global developmental delay, mild intellectual disability, obesity and mild craniofacial dysmorphism (microcephaly, wide rectangular forehead, downslanting palpebral fissures, mild ptosis, prominent nose with long nasal bridge and broad tip, small chin). Other variable reported features include congenital heart defects, hand and foot anomalies (e.g. polydactyly) and agenesis of the corpus callosum.","definition_xrefs":["Orphanet:96168"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 13","termid":"MONDO:0016911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosomy 13q34","secondary_identifiers":["SCTID:766716004","GARD:16847","UMLS:C4707797","MEDGEN:1631901"],"synonyms":[{"name":"Del(13)(q34)","type":"exact"},{"name":"distal deletion 13q34","type":"exact"},{"name":"monosomy type 13q34","type":"exact"},{"name":"subtelomeric deletion 13q34","type":"exact"}],"termid":"MONDO:0019902","xrefs":{"Monarch":{"xref_id":"0019902"}}}


id: PBO:0017490
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-negatively_regulates","termid":"PBO:0017490"}


id: MONDO:1011540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypokalaemic periodic paralysis that occurs in lion.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypokalaemic periodic paralysis, non-human animal","termid":"MONDO:1011434"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypokalaemic periodic paralysis, lion","secondary_identifiers":["OMIA:001759-9689"],"termid":"MONDO:1011540","xrefs":{"Monarch":{"xref_id":"1011540"}}}


id: PBO:0043591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XXI alpha 1 chain","termid":"PBO:0043591"}


id: PBO:0069739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1020, pseudogene","termid":"PBO:0069739"}


id: GO:0019212
data:
  {"annotated_genes":["SJAG_03272","SJAG_04627","SJAG_04999","SJAG_03309","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91389,72252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004864"},{"annotations":[76560,78002,89862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a phosphatase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"phosphatase regulator activity","termid":"GO:0019208"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02380":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_04627":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0004857"}],"interesting_parent_ids":["GO:0140678","GO:0003674","GO:0098772","GO:0030234","GO:0004857"],"is_obsolete":false,"name":"phosphatase inhibitor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0019212","terms_by_termid":{"GO:0004864":null,"GO:0004865":null}}


id: MONDO:0030258
data:
  {"annotated_genes":["SJAG_03601"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88491],"is_not":false,"summary":null,"term":"MONDO:0030258"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pontocerebellar hypoplasia","termid":"MONDO:0020135"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"pontocerebellar hypoplasia, type 14","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1778516","GARD:18032","OMIM:619301","Orphanet:613274","DOID:0112325","UMLS:C5543322"],"synonyms":[{"name":"PCH14","type":"exact"},{"name":"pontocerebellar hypoplasia, type 14","type":"exact"}],"termid":"MONDO:0030258","terms_by_termid":{"MONDO:0030258":null},"xrefs":{"Monarch":{"xref_id":"0030258"}}}


id: GO:0098872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled neurotransmitter receptor activity occurring in the postsynaptic membrane, that is involved in regulating the cytosolic concentration of calcium ions in the postsynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","termid":"GO:0099583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0098872"}


id: GO:0032284
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A biotin carboxylase complex located in the stroma of a plastid.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete plastid biotin carboxylase complex (obsolete GO:0032284)","termid":"GO:0032284"}


id: GO:0046493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.","definition_xrefs":["PMID:20974832","PMID:22216004","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"glycolipid metabolic process","termid":"GO:0006664"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipid A metabolic process","synonyms":[{"name":"lipid A metabolism","type":"exact"}],"termid":"GO:0046493"}


id: GO:0034864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,4,4-trimethylpentanal + H2O = 2,4,4-trimethylpentanoate + 3 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,4,4-trimethylpentanal dehydrogenase activity (obsolete GO:0034864)","termid":"GO:0034864"}


id: PBO:0079876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF3A pseudogene 3","termid":"PBO:0079876"}


id: GO:0050255
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribitol + NAD+ = D-ribulose + H+ + NADH.","definition_xrefs":["EC:1.1.1.56","RHEA:20053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ribitol 2-dehydrogenase (NAD+) activity","secondary_identifiers":["KEGG_REACTION:R01895","MetaCyc:RIBITOL-2-DEHYDROGENASE-RXN"],"synonyms":[{"name":"adonitol dehydrogenase activity","type":"related"},{"name":"ribitol dehydrogenase A (wild type)","type":"related"},{"name":"ribitol dehydrogenase B (mutant enzyme with different properties)","type":"related"},{"name":"ribitol dehydrogenase D (mutant enzyme with different properties)","type":"related"},{"name":"ribitol:NAD+ 2-oxidoreductase activity","type":"related"}],"termid":"GO:0050255"}


id: MONDO:0019669
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"achondrogenesis","termid":"MONDO:0019648"},{"relation_name":"is_a","term_name":"type 2 collagenopathy","termid":"MONDO:0022800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"hypochondrogenesis","secondary_identifiers":["Orphanet:93297","NANDO:2201346","MESH:C563007","UMLS:C0542428","GARD:16815","DOID:0080044","icd11.foundation:1494246635","MEDGEN:107448"],"termid":"MONDO:0019669","xrefs":{"Monarch":{"xref_id":"0019669"}}}


id: GO:0061795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the pH of the Golgi lumen, measured by the concentration of the hydrogen ion.","definition_xrefs":["GOC:dph","PMID:23447592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular pH reduction","termid":"GO:0051452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Golgi lumen acidification","synonyms":[{"name":"Golgi apparatus lumen acidification","type":"exact"}],"termid":"GO:0061795"}


id: MONDO:0007309
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charcot-Marie-Tooth disease type 1A (CMT1A) is a type ofinherited neurological disorder that affects the peripheral nerves. Affected individuals experience weakness and wasting (atrophy) of the muscles of the lower legs beginning in adolescence; later they experience hand weakness and sensory loss. CMT1A is caused byhaving an extra copy (a duplication) of the PMP22 gene. It is inherited in an autosomal dominant manner. Treatment for this condition may include physical therapy ; occupational therapy ; braces and other orthopedic devices; orthopedic surgery;and pain medications.","direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 17","termid":"MONDO:0016950"},{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 1","termid":"MONDO:0019011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 1A","secondary_identifiers":["DECIPHER:29","UMLS:C0270911","GARD:1245","MEDGEN:75727","Orphanet:101081","DOID:0110148","OMIM:118220","NCIT:C75468"],"synonyms":[{"name":"CMT 1A","type":"related"},{"name":"CMT1A","type":"exact"},{"name":"Charcot Marie Tooth disease type 1A","type":"related"},{"name":"Charcot-Marie-Tooth disease type 1A","type":"exact"},{"name":"Charcot-Marie-Tooth disease, autosomal dominant, with focally folded myelin sheaths, type 1A","type":"related"},{"name":"Charcot-Marie-Tooth disease, demyelinating, type 1A","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 1A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 1A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 1A","type":"related"},{"name":"Charcot-Marie-Tooth syndrome type 1A","type":"exact"},{"name":"HMSN 1A","type":"related"},{"name":"HMSN1A","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease with focally folded myelin sheaths type 1A","type":"exact"},{"name":"hereditary motor and sensory neuropathy 1A","type":"exact"},{"name":"microduplication 17p12","type":"exact"}],"termid":"MONDO:0007309","xrefs":{"Monarch":{"xref_id":"0007309"}}}


id: GO:0050420
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 alpha-D-glucose 1-phosphate = maltose + 2 phosphate.","definition_xrefs":["MetaCyc:MALTOSE-SYNTHASE-RXN","EC:2.4.1.139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"maltose synthase activity","secondary_identifiers":["RHEA:22320"],"synonyms":[{"name":"alpha-D-glucose-1-phosphate:alpha-D-glucose-1-phosphate 4-alpha-D-glucosyltransferase (dephosphorylating)","type":"related"}],"termid":"GO:0050420"}


id: GO:0043050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The contraction and relaxation movements of the pharyngeal muscle that mediate feeding in nematodes.","definition_xrefs":["PMID:2181052","GOC:cab1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating behavior","termid":"GO:0042755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nematode pharyngeal pumping","synonyms":[{"name":"pumping behavior","type":"related"}],"termid":"GO:0043050"}


id: GO:0009077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of amino acids of the histidine family.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete histidine family amino acid catabolic process (obsolete GO:0009077)","synonyms":[{"name":"histidine family amino acid breakdown","type":"exact"},{"name":"histidine family amino acid catabolic process","type":"exact"},{"name":"histidine family amino acid catabolism","type":"exact"},{"name":"histidine family amino acid degradation","type":"exact"}],"termid":"GO:0009077"}


id: GO:0035383
data:
  {"annotated_genes":["SJAG_03064","SJAG_02380","SJAG_03290","SJAG_02741","SJAG_00866","SJAG_03731","SJAG_03813","SJAG_03715","SJAG_04499","SJAG_02769","SJAG_03471","SJAG_01524","SJAG_04895","SJAG_04007","SJAG_04865","SJAG_01187","SJAG_01402","SJAG_02158","SJAG_01989","SJAG_03909","SJAG_03313","SJAG_03310","SJAG_00902","SJAG_01139","SJAG_03349","SJAG_00947","SJAG_01474","SJAG_02006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[70567,93448],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[119115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[82059,116407,117823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006084"},{"annotations":[98826,110751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006637"},{"annotations":[76258,82110,116964,79112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[109511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[79224,80814],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"},{"annotations":[67512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[117543,113427],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2001211"},{"annotations":[101041,89864,81045,76558,74663,89427,75298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[73712,91925],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol.","definition_xrefs":["GOC:bf","Wikipedia:Thioester"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_00902":null,"SJAG_00947":null,"SJAG_01139":null,"SJAG_01187":null,"SJAG_01402":null,"SJAG_01474":null,"SJAG_01524":null,"SJAG_01989":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02380":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03310":null,"SJAG_03313":null,"SJAG_03349":null,"SJAG_03471":null,"SJAG_03715":null,"SJAG_03731":null,"SJAG_03813":null,"SJAG_03909":null,"SJAG_04007":null,"SJAG_04499":null,"SJAG_04865":null,"SJAG_04895":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thioester metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"thioester metabolism","type":"exact"}],"termid":"GO:0035383","terms_by_termid":{"GO:0006084":null,"GO:0006085":null,"GO:0006086":null,"GO:0006104":null,"GO:0006637":null,"GO:0019287":null,"GO:0019427":null,"GO:0035336":null,"GO:0035338":null,"GO:1990181":null,"GO:2001211":null,"GO:2001295":null}}


id: GO:0102734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: castasterone + O2 + reduced [NADPH--hemoprotein reductase] = brassinolide + H+ + H2O + oxidized [NADPH--hemoprotein reductase]. Broad specificity for several brassinosteroids, including castasterone, teasterone, and typhasterol.","definition_xrefs":["EC:1.14.14.180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"brassinolide synthase activity","secondary_identifiers":["MetaCyc:RXN-720"],"termid":"GO:0102734"}


id: FYPO:0006169
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to 4-nitroquinoline N-oxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to 4-nitroquinoline N-oxide","synonyms":[{"name":"normal protein phosphorylation during cellular response to 4-NQO","type":"exact"},{"name":"normal protein phosphorylation during cellular response to 4-nitroquinoline N-oxide during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to 4-nitroquinoline N-oxide during vegetative growth","type":"exact"},{"name":"normal protein phosphorylation during cellular response to 4NQO","type":"exact"}],"termid":"FYPO:0006169"}


id: MONDO:0020197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete EEC syndrome and related syndrome (obsolete MONDO:0020197)","secondary_identifiers":["Orphanet:98609"],"synonyms":[{"name":"ectrodactyly-ectodermal dysplasia-cleft lip/palate syndrome and related disorders","type":"exact"}],"termid":"MONDO:0020197","xrefs":{"Monarch":{"xref_id":"0020197"}}}


id: GO:1990838
data:
  {"annotated_genes":["SJAG_01798"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70335],"is_not":false,"summary":null,"term":"GO:1990838"}]},"cv_name":"molecular_function","definition":"Catalysis of 3' exonucleolytic cleavage of poly(U), to form poly(U)-N containing a 3' uridine cyclic phosphate (U>P).","definition_xrefs":["PMID:23022480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-5'-RNA exonuclease activity","termid":"GO:0000175"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004527"}],"interesting_parent_ids":["GO:0004527","GO:0003824","GO:0016787","GO:0016788","GO:0003674","GO:0140098"],"is_obsolete":false,"name":"poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends","references_by_uniquename":{"GO_REF:0000104":null},"termid":"GO:1990838","terms_by_termid":{"GO:1990838":null}}


id: PBO:0060931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor of activated T cells 2","termid":"PBO:0060931"}


id: PBO:0086340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudogenic fragment with similarity to flocculins; YHR213W has a paralog, YAR062W, that arose from a segmental duplication","termid":"PBO:0086340"}


id: GO:0042982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein metabolic process","termid":"GO:0019538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloid precursor protein metabolic process","synonyms":[{"name":"APP metabolic process","type":"exact"},{"name":"APP metabolism","type":"exact"},{"name":"amyloid precursor protein metabolism","type":"exact"}],"termid":"GO:0042982"}


id: GO:1902967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a mitotic spindle midzone.","definition_xrefs":["GOC:TermGenie","PMID:16824200","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to mitotic spindle","termid":"GO:1902480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to mitotic spindle midzone","synonyms":[{"name":"protein localisation in mitotic spindle midzone","type":"exact"},{"name":"protein localisation to mitotic spindle midzone","type":"exact"},{"name":"protein localization in mitotic spindle midzone","type":"exact"}],"termid":"GO:1902967"}


id: GO:0050669
data:
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id: PBO:0080572
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id: PBO:0034306
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id: MONDO:0014580
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id: GO:0030400
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id: GO:0003929
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id: GO:0080090
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