Timeline



Apr 5, 2011:

5:17 PM CommunityAlerts edited by val_wood
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3:35 PM DataHandlingProtocols created by val_wood
3:33 PM WikiStart edited by val_wood
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3:31 PM WikiStart edited by val_wood
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3:30 PM WikiStart edited by val_wood
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3:27 PM ProgressReports edited by val_wood
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3:27 PM ProgressReports created by val_wood
3:25 PM WikiStart edited by val_wood
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3:24 PM WikiStart edited by val_wood
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3:23 PM WikiStart edited by val_wood
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3:23 PM WikiStart edited by val_wood
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3:20 PM CommunityAlerts edited by val_wood
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3:18 PM WikiStart edited by val_wood
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3:18 PM CuratorDocumentation edited by val_wood
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3:16 PM CommunityAlerts edited by val_wood
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3:16 PM CommunityAlerts edited by val_wood
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3:13 PM CommunityAlerts edited by val_wood
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3:12 PM CommunityAlerts edited by val_wood
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3:11 PM CommunityAlerts created by val_wood
3:08 PM CuratorDocumentation edited by val_wood
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3:04 PM CuratorDocumentation edited by val_wood
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Apr 4, 2011:

1:31 PM WikiStart edited by gomidori
add link to curation tool page (diff)
1:30 PM CuratorDocumentation edited by gomidori
minor edit - add link back to wiki home (diff)

Mar 22, 2011:

3:16 PM CuratorDocumentation created by gomidori
new page for documentation links
3:11 PM WikiStart edited by gomidori
adding a few links (diff)

Mar 21, 2011:

4:12 PM Ticket #30 (Sequence update, followed by EMBL update) closed by gomidori
duplicate: moved to SF tracker: …
4:11 PM Ticket #29 (EMBL resubmission) closed by gomidori
duplicate: moved to SF tracker: …
4:09 PM Ticket #25 (Host Contig files locally) closed by gomidori
duplicate: moved to SF tracker: …
4:04 PM Ticket #26 (write abstract for new generic GO slim) closed by gomidori
duplicate: moved to SF tracker: …
4:01 PM Ticket #6 (ticket tracker queries on wiki) closed by gomidori
duplicate: moved to SF tracker: …
3:55 PM Ticket #31 (Pfam checks after Pfam update) closed by gomidori
duplicate: moved to SF tracker: …
3:53 PM Ticket #22 (After UPDATE; sort pseudogenes) closed by gomidori
duplicate: moved to SF tracker: …
3:52 PM Ticket #21 (ortholog table update) closed by gomidori
duplicate: moved to SF tracker: …
3:51 PM Ticket #17 (import data from Broad) closed by gomidori
duplicate: moved to SF tracker: …
3:50 PM Ticket #3 (annotate overlapping protein coding genes) closed by gomidori
duplicate: moved to SF tracker: …
3:46 PM Ticket #9 (genes with antisense transcripts) closed by gomidori
duplicate: moved to SF tracker: …
3:45 PM Ticket #2 (Post translational modifications, move to ontology) closed by gomidori
duplicate: moved to SF tracker: …
3:40 PM Ticket #16 (High level (Slim) GO annotation consistency checking) closed by gomidori
duplicate: moved to SF tracker: …
3:39 PM Ticket #13 (non coding RNA annotation) closed by gomidori
duplicate: moved to SF tracker: …
3:38 PM Ticket #12 (GO annotation G0/ stationary phase) closed by gomidori
duplicate: moved to SF tracker: …
3:36 PM Ticket #1 (review ubiquitin binding annotations) closed by gomidori
duplicate: moved to SF tracker: …
3:36 PM Ticket #19 (replace IEA mappings with manual (or remove)) closed by gomidori
duplicate: moved to SF tracker: …
3:31 PM Ticket #11 (GO: replace TAS annotations) closed by gomidori
duplicate: moved to SF tracker: …
3:30 PM Ticket #7 (annotation extensions) closed by gomidori
duplicate: moved to SF tracker: …
3:27 PM Ticket #4 (check ISS outliers/stale ISS) closed by gomidori
duplicate: moved to SF tracker: …
3:22 PM Ticket #28 (Summary use of "PSU" qualifiers) closed by gomidori
duplicate: moved to SF tracker: …
3:20 PM Ticket #27 (Blank term in ncRNA controlled curation) closed by gomidori
duplicate: moved to SF tracker: …
3:19 PM Ticket #23 (Sort Wilhelm/Broad RNAs) closed by gomidori
duplicate: moved to SF tracker: …
3:13 PM Ticket #20 (sanity check UTRS) closed by gomidori
duplicate: moved to SF tracker: …
3:06 PM Ticket #15 (report GO:ID, term mismatches) closed by gomidori
duplicate: moved to SF tracker: …
3:04 PM Ticket #5 (check GO protein binding reciprocal IPI) closed by gomidori
duplicate: moved to SF tracker: …
2:59 PM Ticket #14 (Change ISS evidence to ISO or ISA) closed by gomidori
duplicate: moved to SF tracker …

Mar 18, 2011:

10:36 PM Ticket #31 (Pfam checks after Pfam update) created by val_wood
• check Pfam query about split family • check YDR195W look for …
6:52 PM Ticket #30 (Sequence update, followed by EMBL update) created by val_wood
• Hideki, gap filling ? • Sasaki M, Idiris A, Tada A, Kumagai H, …
6:47 PM Ticket #29 (EMBL resubmission) created by val_wood
To pick up new features …
6:36 PM Ticket #28 (Summary use of "PSU" qualifiers) created by val_wood
There are 136 PSU qualifiers, Is it possible to extract their …
6:24 PM Ticket #27 (Blank term in ncRNA controlled curation) created by val_wood
get rid of blank term= in Non coding RNAs in misc_RNA (463 errors) …
6:21 PM Ticket #26 (write abstract for new generic GO slim) created by val_wood
5:49 PM Ticket #24 (Host Contig files locally) closed by val_wood
duplicate
5:47 PM Ticket #25 (Host Contig files locally) created by val_wood
We need to host the contig files somewhere where myself Midori and …
5:47 PM Ticket #24 (Host Contig files locally) created by val_wood
We need to host the Artemis files somehwere where myself Midori and …
4:30 PM Ticket #18 (Error for SF account) closed by gomidori
fixed: Apparently SF has done the name change now -- they haven't informed me …
4:15 PM Ticket #23 (Sort Wilhelm/Broad RNAs) created by val_wood
We need to go through the RNAs and merge the Wilhelm/Broad? RNAs where …
3:45 PM Ticket #22 (After UPDATE; sort pseudogenes) created by val_wood
Some pseudogenes have changed status and need "warning, previously …
3:42 PM Ticket #21 (ortholog table update) created by val_wood
ortholog table - missing genes - new items from new gens - sort …
1:58 PM WikiStart edited by gomidori
(diff)
1:03 PM Ticket #20 (sanity check UTRS) created by val_wood
addd a sanity check to ensure that UTRS are not i) overlapping with or …
11:47 AM Ticket #19 (replace IEA mappings with manual (or remove)) created by gomidori
The IEA data is filtered against the manual annotation to remove …
11:23 AM Ticket #18 (Error for SF account) created by val_wood
http://pombase.sourceforge.net/ gives error can you poke around ?
11:09 AM Ticket #17 (import data from Broad) created by val_wood
new genes (DONE) gene structure changes (DONE) ncRNAs (DONE) UTRs in …

Mar 17, 2011:

11:51 PM Ticket #16 (High level (Slim) GO annotation consistency checking) created by val_wood
There is a script which when supplied with a GO ID, and the current …
11:20 PM Ticket #15 (report GO:ID, term mismatches) created by val_wood
Report and GO terms which are not primary term name or exact synonym
11:07 PM Ticket #14 (Change ISS evidence to ISO or ISA) created by val_wood
We can only use ISS in GeneDB but after the move, i) all ISS with=SGD …
11:03 PM Ticket #13 (non coding RNA annotation) created by val_wood
i) Most noncoding RNAs (rRNA, sno, etc) are annotated with RCA, need …
10:14 PM Ticket #12 (GO annotation G0/ stationary phase) created by val_wood
GO TERMS GO:0070315 G1 to G0 transition involved in cell …
10:03 PM Ticket #10 (GO: replace TAS annotations) closed by val_wood
duplicate
10:02 PM Ticket #11 (GO: replace TAS annotations) created by val_wood
March 2011 1460 Should be able to replace all with experimental or ISS
10:02 PM Ticket #10 (GO: replace TAS annotations) created by val_wood
March 2011 1460 Should be able to replace all with experimental or ISS
9:51 PM Ticket #8 (geens with antisense transcripts) closed by val_wood
duplicate
9:48 PM Ticket #9 (genes with antisense transcripts) created by val_wood
Add gene expression, antisense transcript detected to all genes with …
9:48 PM Ticket #8 (geens with antisense transcripts) created by val_wood
Add gene expression, antisense transcript detected to all genes with …
9:35 PM Ticket #7 (annotation extensions) created by val_wood
Need to i) See which annotation_extension relations have been used so …
5:52 PM Ticket #6 (ticket tracker queries on wiki) created by gomidori
Formulate custom queries and put links on wiki for ticket tracker …
5:48 PM Ticket #5 (check GO protein binding reciprocal IPI) created by gomidori
Check that all GO protein binding IPI have reciprocal annotations …
5:39 PM Ticket #4 (check ISS outliers/stale ISS) created by gomidori
There are a LARGE number of ISS annotations which are "unsupported" …
5:28 PM Ticket #3 (annotate overlapping protein coding genes) created by gomidori
I want to annotate all of the protein coding genes which overlap with …
5:17 PM Ticket #2 (Post translational modifications, move to ontology) created by gomidori
I had a tracker item to standardise the post-translational …
5:02 PM Ticket #1 (review ubiquitin binding annotations) created by gomidori
There are a number of genes annotated with "ubiquitin binding" …
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