Changes between Version 10 and Version 11 of AnnotatingInArtemis


Ignore:
Timestamp:
Dec 6, 2012, 2:25:49 PM (9 years ago)
Author:
val_wood
Comment:

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  • AnnotatingInArtemis

    v10 v11  
    22= Annotating features in Artemis =
    33
    4 == genes ==
     4== "gene" features ==
    55
    6  * CDS (5154)
    7  * CDS /pseudo
    8  * misc_RNA  (1566)
    9  * rRNA (47)
    10  * snoRNA (55)
    11  * tRNA (170)
    12  * snRNA (7)
     6These are the "feature keys" used for genes
    137
    14 The following qualifiers are avaiable for all genes
     8 * CDS
     9 * CDS  with qualifier /pseudo for pseudogene
     10 * misc_RNA 
     11 * rRNA
     12 * snoRNA
     13 * tRNA
     14 * snRNA
     15
     16The following qualifiers are available for all genes
    1517
    1618names
     
    1921 * /synonym cardinality 0,1,>1
    2022 * /obsolete_name cardinality 0,1,>1
    21  * /gene legacy
     23 * /gene (legacy, deprecated)
    2224 * /product cardinal= 1
    2325 * /reserved_name
     
    3234
    3335== features associated with genes ==
    34  * 3'UTR (4752)
    35  * 5'UTR (4697)
    36  * polyA_Signal (1)
    37  * promoter (61)
    38  * polyA_site (17)
    39  * intron (980)
     36
     37 * 3'UTR
     38 * 5'UTR
     39 * polyA_Signal
     40 * promoter
     41 * polyA_site
     42 * intron
    4043
    4144 * /systematic_ID (mandatory the same systematic ID as the gene as CDS as they are part of the same gene)