Changes between Version 4 and Version 5 of AnnotationCompleteChecklist


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Timestamp:
Jul 7, 2015, 4:24:46 PM (5 years ago)
Author:
mah79
Comment:

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  • AnnotationCompleteChecklist

    v4 v5  
    2222  * Remove any TAS/NAS/ISS which are now covered by experiment
    2323  * Automated mappings (IEA) will be suppressed by experimental data. Are any IEA annotations not covered by your manual annotation? It should be possible to make a manual annotation to cover all automated mappings (if no experimentally supported annotation can be made, a manually evaluated ISS should be possible)
    24   * Mappings that can't be replaced by manual ISS or experimental annotations may be incorrect and need to be removed. Report incorrect mappings on the [https://sourceforge.net/tracker/?group_id=36855&atid=605890 GO annotation issues tracker]
     24  * Mappings that can't be replaced by manual ISS or experimental annotations may be incorrect and need to be removed. Report incorrect mappings on the [https://sourceforge.net/p/geneontology/annotation-issues/ GO annotation issues tracker]
    2525   * Swiss-Prot keyword (SPKW, SP_KW, UniProtKB-KW) mappings: choose category "!UniProt KW2GO mapping", group "GOA", and assign to "goa-ebi"
    2626   * Swiss-Prot Subcellular Location (SP_SL, UniProtKB-!SubCell) mappings: category "!UniProt subcell2GO mapping", group "GOA", assign to "goa-ebi"
     
    2828   * For !UniProt keyword and subcellular location mappings, you can also go to the !UniProt entry from a !PomBase gene page and send a message to !UniProt. Ivo Pedruzzi will fix it quickly.
    2929  * Some "pombe kw mappings" have NAS evidence code (you will know these are mappings because they will not be visible in the Artemis curation tool. These will need to be deleted from the mapping file.
    30   * If a mapping doesn't seem to be the problem, the ontology may need to be revised; contact GO editors via the [https://sourceforge.net/tracker/?atid=440764&group_id=36855&func=browse ontology tracker]
     30  * If a mapping doesn't seem to be the problem, the ontology may need to be revised; contact GO editors via the [https://sourceforge.net/p/geneontology/ontology-requests/ ontology tracker]
    3131 * Check for consistency with other annotations and other resources
    3232 * Make sure all remaining ISS are made to an experimentally characterised ortholog.