Changes between Version 692 and Version 693 of AntoniasCuratedPapers


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Timestamp:
Nov 16, 2012, 2:55:36 PM (9 years ago)
Author:
antonialock
Comment:

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  • AntoniasCuratedPapers

    v692 v693  
    377377||12557275||http://curation.pombase.org/pombe/curs/947219ec962a1b36||
    378378||nic1||high affinity nickel cation transmembrane transporter activity||annotation_extension=inhibited_by(CHEBI:48828)IMP||
    379 ||nic1-1||inviable||MM with urea nitrogen source, agar||added this one but WHICH ONE IS IT??? see below||
    380 ||nic1-1||decreased growth||MM with urea nitrogen source, nickel added, agar||
    381 
    382379
    383380[[BR]]
    384381||23074192||http://curation.pombase.org/pombe/curs/4a7f9665ed7386e8/||
    385 ||pmt1||abolished trna methylation||allele=C81A, assayed_using(SPATRNAASP.01, residue=C38), in vitro, gel electrophoresis||
    386 ||pmt1||abolished trna methylation||allele=C81A, assayed_using(SPATRNAASP.02, residue=C38), in vitro, gel electrophoresis||
    387 ||pmt1||normal trna methylation||allele=C81A, assayed_using(SPATRNAASP.01, residue=C48, C49, C60, C61, C62), in vitro, gel electrophoresis||
    388 ||pmt1||normal trna methylation||allele=C81A, assayed_using(SPATRNAASP.02, residue=C48, C49, C60, C61, C62), in vitro, gel electrophoresis||
    389 ||pmt1||increased trna methylation||wt overexpressed, assayed_using(SPATRNAASP.01, residue=C38), in vitro, gel electrophoresis||
    390 ||pmt1||increased trna methylation||wt overexpressed, assayed_using(SPATRNAASP.02, residue=C38), in vitro, gel electrophoresis||
    391 ||pmt1||trna meth in response to nitrogen starvation||IDA||
    392 ||sck2||positive regulation of GO:1901619||IMP||
    393 ||sck1||normal tRNA methylation activity||deletion, peptone medium, assayed using(pmt1), substance quant||
    394 ||pka1||normal tRNA methylation activity||deletion, peptone medium, assayed using(pmt1), substance quant||
    395 ||tor1||normal tRNA methylation activity||deletion, peptone medium, assayed using(pmt1), substance quant||
    396 ||sck2||decreased tRNA methylation activity||deletion, peptone medium, assayed using(pmt1), substance quant||
    397 ||pmt1||abolished tRNA methylation activity||C81A, peptone medium, assayed using(pmt1), substance quant||
    398 ||SPAC23C4.17 - trm4b||normal tRNA methylation||deletion, trna asp residues C48, C49, C60, C61, C62||
    399 ||SPAC17D4.04 - trm4a||normal tRNA methylation||deletion, trna asp residues C48, C49, C60, C61, C62||
    400 ||SPAC23C4.17 - trm4b ||increased tRNA methylation||deletion, trna asp residues C38||
     382annotation_extension=assayed_using(SPATRNAASP.01) | annotation_extension=assayed_using(SPATRNAASP.02)
     383were any experiments not done in vitro? if not then add this condition + extensions
     384||sck2||positive regulation of GO:1901619 = GO:1901644||IMP||
    401385the intro says that C38 in tRNA Asp is in the anticodon loop in mouse, drosophila and arabidopsis. I ran a secondary structure prediction of pombe tRNA Asp and it looks like anticodon is 33-35.
    402386