Changes between Version 3 and Version 4 of CapturingGeneExpression


Ignore:
Timestamp:
Sep 6, 2011, 3:33:54 PM (10 years ago)
Author:
val_wood
Comment:

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  • CapturingGeneExpression

    v3 v4  
     1 * gene expression, post transcriptional regulation of Tsn1 expression
     2 * alternative transcript, -> migrate to transcript features
     3 * alternative translation,
     4 * gene expression, antisense transcript detected
     5 * gene expression, meiosis-specific splicing
     6 * gene expression, promoter contains CCAAT element (these need migrating to sequence features attached to the genes they are regulating)
     7 * val try to migrate to extensions
     8 * gene expression, target genes transcriptionally co-regulated by Cdk9 (1)
     9 * gene expression, target genes transcriptionally co-regulated by Mcs6
     10 * gene expression, transcriptionally regulates eng1 target genes       PMID:19328067           (0 Others)
     11 * gene expression, transcriptionally regulates ace2 target genes       PMID:19328067           (0 Others)
    112
     13 = move to GO =
     14 * gene expression, transcriptionally repressed by cAMP signaling pathway       PMID:1849107            (0 Others)
     15 * gene expression, transcriptionally regulated by Cyr1 PMID:8001792            (0 Others)
     16 * gene expression, transcriptionally regulated by Gpa2 PMID:8001792    indirect        (0 Others)
     17 * gene expression, transcriptionally regulated by Tup11        PMID:11238405           (0 Others)
     18 * gene expression, transcriptionally regulated by Tup12        PMID:11238405           (0 Others)
     19 * gene expression, transcriptionally regulated by CCAAT complex        PMID:11238405           (3 Others)
     20 * gene expression, transcriptionally activates genes required for anaerobic growth under oxygen-limiting conditions
     21 * gene expression, transcriptionally activates stress related genes
     22 * gene expression, transcriptionally regulates genes involved in nitrogen metabolism (1)
     23 * gene expression, transcriptionally regulates genes involved in thiamin biosynthesis (2)
     24 * gene expression, transcriptionally regulates genes involved in vesicle mediated transport
     25 * gene expression, transcriptionally regulated by CCAAT complex
     26 * gene expression, transcriptionally represses genes involved in cell surface adhesion (3)
     27 * gene expression, transcriptionally represses genes involved in glucose uptake (2)
     28 * gene expression, transcriptionally represses genes involved in iron uptake (2)
     29 * gene expression, transcriptionally represses genes involved in transport
    230
    3 gene expression, post transcriptional regulation of Tsn1 expression
    4 alternative transcript, -> migrate to transcript features
    5 alternative translation,
    6 gene expression, antisense transcript detected
    7 gene expression, meiosis-specific splicing
    8 
    9 gene expression, promoter contains CCAAT element
    10 (these need migrating to sequence featrures attatched to the genes they are regulating)
    11 
    12 val try to migrate to extensions
    13 gene expression, target genes transcriptionally co-regulated by Cdk9 (1)
    14 gene expression, target genes transcriptionally co-regulated by Mcs6
    15 gene expression, transcriptionally regulates eng1 target genes  PMID:19328067           (0 Others)
    16 gene expression, transcriptionally regulates ace2 target genes  PMID:19328067           (0 Others)
    17 
    18 move to GO
    19 gene expression, transcriptionally repressed by cAMP signaling pathway  PMID:1849107            (0 Others)
    20 gene expression, transcriptionally regulated by Cyr1    PMID:8001792            (0 Others)
    21 gene expression, transcriptionally regulated by Gpa2    PMID:8001792    indirect        (0 Others)
    22 gene expression, transcriptionally regulated by Tup11   PMID:11238405           (0 Others)
    23 gene expression, transcriptionally regulated by Tup12   PMID:11238405           (0 Others)
    24 gene expression, transcriptionally regulated by CCAAT complex   PMID:11238405           (3 Others)
    25 
    26 move to GO
    27 gene expression, transcriptionally activates genes required for anaerobic growth under oxygen-limiting conditions
    28 gene expression, transcriptionally activates stress related genes
    29 gene expression, transcriptionally regulates genes involved in nitrogen metabolism (1)
    30 gene expression, transcriptionally regulates genes involved in thiamin biosynthesis (2)
    31 gene expression, transcriptionally regulates genes involved in vesicle mediated transport
    32 gene expression, transcriptionally regulated by CCAAT complex
    33 gene expression, transcriptionally represses genes involved in cell surface adhesion (3)
    34 gene expression, transcriptionally represses genes involved in glucose uptake (2)
    35 gene expression, transcriptionally represses genes involved in iron uptake (2)
    36 gene expression, transcriptionally represses genes involved in transport
    37 
    38 need to deal with complexes
    39 
    40 
    41 -----
    42 gene expression, consitutive
    43 
    44 
    45 -----
    46 
    47 transcriptionally regulated by ->check represented as transcriptionally regulates,
    48 than infer.
    49 gene expression, expressed during meiosis, specifically
    50 expressed during (phese)
    51 expressed only during (phase)
    52 expressed during process
    53 
    54 expressed in response to (stimulus) nucleotide deplition /mating pheromone
    55 OR expression induced by
    56 -> increaded
    57 ->decreased
    58 
    59 expressed in cell type
    60 gene expression, expression autoregulated (move to GO annotation extension)
     31 * need to deal with:
     32 * complexes
     33 * gene expression, consitutive
     34 * transcriptionally regulated by ->check represented as transcriptionally regulates, then infer.
     35 * gene expression, expressed during meiosis, specifically
     36 * expressed only during (phase)
     37 * expressed in cell type
     38 * gene expression, expression autoregulated (move to GO annotation extension)
    6139
    6240
    6341======
    6442
    65 || expression type|| detail  ||
    66 || expression>tanscription|mRNA stability|translation || during phase or process, in response to stimulus||
     43|| expression type|| detail  || level ||
     44|| expression>tanscription|mRNA stability|translation || during phase or process (S, phase, meiosis, sporulation), in response to stimulus (e.g. nucleotide depletion/mating pheromone) || increased/decreased||
    6745
    6846