Changes between Version 63 and Version 64 of CapturingGeneExpression


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Timestamp:
Jan 27, 2015, 2:47:22 PM (6 years ago)
Author:
vw253
Comment:

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  • CapturingGeneExpression

    v63 v64  
    66 Annotations to describe the amount of transcript/protein level or the changes in level which occur in different conditions or at different phases in WT cells.
    77
    8  *Qualitive Expression annotation  comprises of  4 pieces of data:
     8 * Qualitative Expression annotation  comprises of  4 pieces of data: Expression Type, Relation, Level and Evidence
     9 
     10 == Expression Type ==
     11
     12|| AllowedType|| Comment||
     13||RNA level ||A northern blot (for instance) can only tell you if there is RNA there||
     14||protein level|-|||
     15|| transcription||Requires a specific assay for transcription, not only presence of RNA, as could be decreased degradation|\
     16||RNA degradation|| Requiers a specific assay for degradation||
     17||translation|| -||
     18||protein degradation||-||
     19
    920  * '''Expression type''' Allowed types: RNA level, protein level, transcription, RNA degradation, translation, protein degradation
    1021   * A northern blot (for instance) can only tell you if there is RNA there, and if the amount changes during different conditions. Other assays may tell you specifically if it is transcription or degradation that is affected (for instance, the amount of RNA could increase due to increased transcription or decreased degradation).