Changes between Version 74 and Version 75 of CapturingGeneExpression


Ignore:
Timestamp:
Jan 27, 2015, 3:00:34 PM (6 years ago)
Author:
vw253
Comment:

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  • CapturingGeneExpression

    v74 v75  
    66 Annotations to describe the amount of transcript/protein level or the changes in level which occur in different conditions or at different phases in WT cells.
    77
    8  * Qualitative Expression annotation  comprises of  4 pieces of data: Expression Type, Relation, Level and Evidence
    9  * Qualtative expression is currently curated in Artemis, but will eventually be captured in Canto
     8 * Qualitative Expression annotation  comprises of  5 pieces of data: Expression Type, Annotation extension( Relation), Level, Evidence and reference
     9 * Qualitative expression is currently curated in Artemis, but will eventually be captured in Canto
     10 * Syntax
     11  /controlled_curation="term=gene expression, RNA level; annotation_extension=during(GO:xxxxxxx); qualifier=increased; evidence=ECO:xxxx; db_xref=PMID:xxxxxxx; date=YYYYMMDD"
    1012
    11   Syntax
    12   /controlled_curation="term=gene expression, RNA level; annotation_extension=during(GO:xxxxxxx); qualifier=increased; evidence=ECO:xxxx; db_xref=; date=YYYYMMDD"
    13 
    14  
    1513
    1614
    1715 == Expression Type ==
     16
    1817
    1918||Allowed Type||Comment||
     
    2726
    2827
    29  == Relation ==
    30 
     28 == Annotation extension (Relation) ==
    3129
    3230||Allowed relations||Example || comment||
     
    4038 == Level ==
    4139
    42  * '''Level''' allowed qualifiers: present, absent, unchanged, increased, decreased, constant, fluctuates
     40 *   allowed qualifiers: present, absent, unchanged, increased, decreased, constant, fluctuates
    4341 
    4442
     
    5856
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    60 ||'''Examples table'''||
     58||'''Examples'''||
    6159||'''type'''||'''relation'''||'''level'''||'''description'''||'''formal'''||
    6260||RNA level||during(veg growth)||present||RNA detected during vegetative growth||term=gene expression, RNA level; annotation_extension=during(GO:0072690); qualifier=present; evidence=ECO:0000106; db_xref=PMID:1; date=YYYYMMDD"||