Changes between Version 79 and Version 80 of CapturingGeneExpression


Ignore:
Timestamp:
Jan 27, 2015, 3:11:55 PM (6 years ago)
Author:
vw253
Comment:

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  • CapturingGeneExpression

    v79 v80  
    3636   * Unstressed conditions include growth on YE and MM unless there is a known difference between the two (in which case EMM might eg be a starvation condition
    3737 
    38  == Level ==
     38 == Level (qualifier) ==
    3939
    4040 *   allowed qualifiers: present, absent, unchanged, increased, decreased, constant, fluctuates
     
    6060 = Quantitative Data =
    6161
    62  == File format for bulk upload ==
    63 
    64 || Column || Content|| Required || Cardinality|| Example||
    65 || 1.|| Systematic ID || required || 1 ||SPBC11B10.09 ||
    66 || 2. || Type || required || 1 || RNA OR protein ||
    67 || 3. || During* || required || 1 || GO:0072690 ||
    68 || 4. || Average copies per cell || required || 1 || 5 ||
    69 || 5. || Range (of copies/cell)|| optional || 1|| 5-10 ||
    70 || 6. || Evidence || required || 1 || ECO:0000046||
    71 || 7. || Qualifier** || required || 1|| "population wide" OR " "single cell" ||
    72 || 8. || Source || required || 1 || PMID:12345678 ||
    73 
    74 * will be converted to annotation_extension=during(GO:0072690)
    75 
    76 ** A property value that captures whether the expression is determined at the level of a single cell or a population. Related but not identical to evidence (some kinds of evidence
    77 allow inferences about expression in an individual cell, whereas other evidence types only support population-level inferences). Property name is "qual_gene_ex_cell_distribution"; value can be "population wide" or "single cell".
     62Please use the spreadsheet  file format described here:
     63http://www.pombase.org/submit-data/quantitative-gene-expression-bulk-upload-file-format
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