wiki:CapturingGeneExpression

Version 6 (modified by val_wood, 10 years ago) (diff)

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move to transcript features

  • alternative transcript, -> migrate to transcript features
  • alternative translation,
  • gene expression, antisense transcript detected
  • gene expression, meiosis-specific splicing
  • gene expression, promoter contains CCAAT element (these need migrating to sequence features attached to the genes they are regulating)

move to GO

  • gene expression, post transcriptional regulation of Tsn1 expression
  • gene expression, transcriptionally repressed by cAMP signaling pathway PMID:1849107 (0 Others)
  • gene expression, transcriptionally regulated by Cyr1 PMID:8001792 (0 Others)
  • gene expression, transcriptionally regulated by Gpa2 PMID:8001792 indirect (0 Others)
  • gene expression, transcriptionally regulated by Tup11 PMID:11238405 (0 Others)
  • gene expression, transcriptionally regulated by Tup12 PMID:11238405 (0 Others)
  • gene expression, transcriptionally regulated by CCAAT complex PMID:11238405 (3 Others)
  • gene expression, transcriptionally activates genes required for anaerobic growth under oxygen-limiting conditions
  • gene expression, transcriptionally activates stress related genes
  • gene expression, transcriptionally regulates genes involved in nitrogen metabolism (1)
  • gene expression, transcriptionally regulates genes involved in thiamin biosynthesis (2)
  • gene expression, transcriptionally regulates genes involved in vesicle mediated transport
  • gene expression, transcriptionally regulated by CCAAT complex
  • gene expression, transcriptionally represses genes involved in cell surface adhesion (3)
  • gene expression, transcriptionally represses genes involved in glucose uptake (2)
  • gene expression, transcriptionally represses genes involved in iron uptake (2)
  • gene expression, transcriptionally represses genes involved in transport

to migrate to extensions

  • gene expression, target genes transcriptionally co-regulated by Cdk9 (1)
  • gene expression, target genes transcriptionally co-regulated by Mcs6
  • gene expression, transcriptionally regulates eng1 target genes PMID:19328067 (0 Others)
  • gene expression, transcriptionally regulates ace2 target genes PMID:19328067 (0 Others)

need to deal with

  • complexes
  • gene expression, consitutive
  • transcriptionally regulated by ->check represented as transcriptionally regulates, then infer.
  • gene expression, expressed during meiosis, specifically
  • expressed only during (phase)
  • expressed in cell type
  • gene expression, expression autoregulated (move to GO annotation extension)

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expression type detail level
expression>tanscription|mRNA stability|translation during phase or process (S, phase, meiosis, sporulation), in response to stimulus (e.g. nucleotide depletion/mating pheromone) increased/decreased