Changes between Initial Version and Version 1 of ChadoGenotypesPhenotypes


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Timestamp:
Oct 16, 2014, 2:28:18 AM (7 years ago)
Author:
kmr44
Comment:

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  • ChadoGenotypesPhenotypes

    v1 v1  
     1= Storage of genotypes and phenotypes in Chado =
     2
     3== Current (v46) storage ==
     4
     5Phenotype cvterms are connected to allele features via the feature_cvterm table.
     6
     7== Future (v48?) storage ==
     8
     9We will add a new feature for each genotype with the type "genotype" from SO.
     10
     11Phenotype terms will be connected to the genotypes via the feature_cvterm table.
     12
     13Each genotype will have one or more alleles via the feature_relationship table with the "part_of" relation.
     14
     15All annotation will be attached to genotypes rather than alleles.  Existing alleles will have a genotype created for them and the annotation will move to that genotype.