Changes between Version 208 and Version 209 of CuratorMeeting


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Timestamp:
Feb 10, 2012, 12:41:51 AM (10 years ago)
Author:
val_wood
Comment:

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  • CuratorMeeting

    v208 v209  
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     9 * protein  binding
     10  * direct /indirect see e-mail thread "protein-protein interaction phenotype"
     11
     12 * Using OBO-Edit, part 2: editing & saving
     13  * make a "condition" ontology
     14
     15
     16
    917== Priorities for next few weeks ==
    10 
    11  * GO through Antonia extensions (kim generated file with links to sessions)
    12  
    13  
     18 
    1419
    1520=== Val ===
     
    1823 * SF related
    1924 * publications
    20  * extensions on phenotypes generally
    21  * Questions, should annotation extension (gene products) be stored in duplicate on phenotypes and GO annotations?)
    22    * making links between phenotypes and GO terms, when should a GO annotation be made
    2325 * Making IC annotations (in Artemis)
    2426 * capturing or inferring recessivity/dominence (and capturing heterozygosity or homozygosity in a diploid)
    2527   * Will discuss when we have real life examples
    26  * has Antonia got any outstanding questions about relations (e-mail thread on Thursday)
    27    * if we have the list of relations we have used we can go through this. required_for came up....
    28  * Localization questions, use PMID:20298435 egs.
    29     * should the localization only be direct transport, anchoring, chaperoning? what about complex assembly, or part of a complex
     28 
    3029
    3130=== Midori ===
     
    3534=== Antonia ===
    3635
    37 
    3836== Antonia's Questions ==
    3937
    4038== Small/ongoing projects ==
    41 
    42  * Using OBO-Edit, part 2: editing & saving
    43    * make a "condition" ontology
    4439
    4540
     
    5247== Data types/ Data descriptions ==
    5348
    54  * revisit expression syntax https://sourceforge.net/apps/trac/pombase/wiki/CapturingGeneExpression
    55     * final decision so far was expression_type= detail=relevent annotation extension level=increased/decreased
    56     * should be able to retrofit them into the data model later.....
    57     * maybe should migrate to Artemis?
    58     * also need to retrofit existing gene expression annotation
    59     * discuss curation tool options
    60     * discuss  all with Kim
    61 
    6249
    6350== General ==
     
    6653 * Need a list of curation tool features, existing and proposed
    6754
    68  * need to thrash out allele descriptions
     55 * need to document allele descriptions
    6956
    7057 * Implications of sequence change for residues and alleles , checks curators need to take, also need to discuss this with Mark
     
    7663 * sporulation/germination GO ? https://sourceforge.net/tracker/index.php?func=detail&aid=3452447&group_id=36855&atid=440764
    7764
    78 
    79  * controlled curation type -pathway
    8065
    8166 * contributes_to qualifier
     
    10287   * when to precompose...if there is a term genie template
    10388 
    104 
    105  * direct binding
    106  
    107 
    108 
    10989
    11090== Future tasks to discuss with Mark ==
     
    172152 * systematic reduction of the orphan set
    173153 * explain filtering GO annotation redundancy (experimental vs. non experimental)
    174 
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