Changes between Version 402 and Version 403 of CuratorMeeting


Ignore:
Timestamp:
Apr 22, 2013, 10:02:12 PM (8 years ago)
Author:
val_wood
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • CuratorMeeting

    v402 v403  
    88 == Monday 22 April ==
    99
    10 before 10.00
    11  *  follow up from below: Antonia will paste in her "protein glycosylation" so far
    12  * Rota for log files/news feed
     10
     11 * follow up from below: Antonia will paste in her "protein glycosylation" so far (DONE)
     12
    1313 * check that the qualative/quantitve expression stuff is all documented and working OK (need list of allowed qualifiers etc)
    14 
    15 
    16 ? A.M 10.00  Call with Kim to chat about Curation tool :
    17  * request to curate a paper e-mail, revisions
    18 
    19 P.M
    20 
    21   * PomBase User Documentation Drafts (see wiki, mainly done, we should check these through  for details (i.e where TMHMMs from) and move onto jira for mark to link to  page sections, and announce)
    22     * documentation for PomBase gene pages, update
    23 
    24  * If time go through curation tracker, and see what con be done quickly
    25 
    26  == Tuesday 23rd April  ==
    27 
    28 10-11 Quick jobs
     14 (DONE OR IN PROGRESS)
     15
     16 * Call with Kim to chat about Curation tool :
     17   * request to curate a paper e-mail, revisions (IN PROGRESS WE 3 VW,MH,AL, will do thorough testing once next batch of changes are made to test)
     18
     19
     20 * PomBase User Documentation Drafts (see wiki, mainly done, we should check these through  for details (i.e where TMHMMs from) and move onto jira for mark to link to  page sections, and announce)
     21 (IN PROGRESS, MODT POMBASE USER DOCUMENTATION IS IN PLACE, NEED TO LINK FROM SPECIFIC PAGE SECTIONS TO HELP, and ANNOUNCE)
     22
    2923
    3024 * make some FYPO terms unavaiable for direct annotation. There are  lots of terms where it should be possible to make a more specific phenotype annotation (i.e swollen, elongated, multinucleate, aseptate etc), where it is possible that we did not know this when we made the original annotation. We should slowly look through these and move down. An example but not a great one: https://sourceforge.net/p/pombase/curation-tasks/181/...we we should make the curation tool force people to annotate more specifically for these. For example they should never be able to annotate to a term which does not specify vegetative/ vs G0/ meiotic etc....
     25 (DISCUSSED, AS WE NOTICE TERMS WE CAN ADD THIS SUBSET, AND "DO NOT ANNOTATE" COMMENT. ASKED KIM TO ADD A WARNING TO LOGS)
     26 
    3127
    3228 * "response to" phenotype only?
     
    3430   * It seems odd that sty1 will only be annotated to "response to oxidative stress" via 'regulation....'
    3531its almost as if we need a term "signalling in response to oxidative stress"
    36 which is "part_of" the "cellular response to oxidative stress"
     32
     33 (DISCUSSED, WE WILL NOT USUALLY USE "RESPONSE TO" Terms for GO TERM ANNOTATIONS ANY MORE, BUT WE WILL USE TO  MAKE PHENOTYPE ANNOTATIONS AND USE "IN RESPONSE TO" IN EXTENSIONS)
     34
     35
     36 * Group call
     37
     38   General issues:
     39
     40   * ISB/ GO meeting (GMOD (canto/ chado), curation rules (function prediction people)
     41   * nextPomBase build
     42   
     43    Individual Updates & Priorities
     44   * Val priorities: cell cycle report and related annotation updates, import of deletion project morphology phenotypes (~5000 annotations), curation session approval, curation, off work 2 weeks, tidy wiki, curation tool video (Val will look at S/ware and or contact Gulietta), more consistency rules, community curation launch preparation
     45 
     46   * Midori (FYPO, queries for Val, now in progress)
     47   * Antonia (RT, more curation)
     48   * Kim  (Community curation release items )
     49     * V 35 build, is ready for curators for checking
     50   * MArk (version 34 tickets, will check open RT tickets)
     51     * V34 will be  hopefully be live for 29th
     52     * Sam's data, seems to be some discreapancy in the amount of data but should be between 2-4 annotatiosn per gene?
     53
     54
     55
     56 * If time go through curation tracker, and see what con be done quickly
     57
     58 == Tuesday 23rd April  ==
    3759
    3860A.M 11.00 Group call