Changes between Version 451 and Version 452 of CuratorMeeting


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Timestamp:
Jan 20, 2014, 2:10:55 PM (8 years ago)
Author:
val_wood
Comment:

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  • CuratorMeeting

    v451 v452  
    1616 *  Biogrid has recorded notes and phenotypes of their interaction. Looks pretty useful....can we display/convert?
    1717 
     18 * check biogrid alignment progress with Antonia
     19https://sourceforge.net/p/pombase/curation-tasks/258/
     20
     21
    1822 == Outreach ==
    1923
     
    2428
    2529 == Canto ==
     30
    2631 * text, for whether a paper contains curatable gene or not
    2732 * text, do you want to transfer evidence or condition
     
    2934 * evaluating curtain tool, where do people expected to go (gene page or summary page) after annotation completion? - if I have annotated a single gene I expect to stay on that page. I f I have transferred annotations I feel as though I should go back to the summary page. Or is that odd?
    3035
    31  == !PomBase gene page overhaul ==
    32  
     36 == !PomBase ==
     37 gene page overhaul
    3338 * Describe how we would like to display annotations to streamline/ hide redundancy
    3439 * changes to data layout and sorting on gene page, user configuration
    3540
    36  == Future Pombelist posts ==
     41 * what  we do about phenotypes for double mutants (display/query/enrichment etc)
     42 (we can probably bump this to next meeting?)
     43 
     44
     45 * [https://sourceforge.net/p/pombase/fission-yeast-phenotype/1056/ SF 1056] abnormal contractile ring organization / uncoupled cytokinetic rings
     46 
     47 
     48 == Ontology questions ==
     49
     50 * has_output between process and structure phenotypes, e.g. abolished actomyosin contractile ring assembly has_output contractile ring absent
     51   I am not sure what the question is, but I guess there must be one, so I think the first question is to guess the question.
     52
     53* Discuss has_part in relation to annotation propagation in Canto
     54  * [https://sourceforge.net/p/pombase/curation-tool/566/ SF 566] use has_part relationships for ontology term drill-down
     55
     56 * Discuss when annotations should inherit over FYPO (or alternative solutions)  https://sourceforge.net/p/pombase/curation-tasks/188/
     57
     58  == Curation issues ==
     59
     60 * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
     61
     62 * how to represent the reintegration assays ?
     63
     64
     65 
     66  = Lower priority =
     67
     68
     69  == Future Pombelist posts ==
    3770    * physical interaction Biogrid vs GO
    3871    * phenotypes vs. processes
     
    4376    etc
    4477
    45  
    46 
    47  * [https://sourceforge.net/p/pombase/fission-yeast-phenotype/1056/ SF 1056] abnormal contractile ring organization / uncoupled cytokinetic rings
    48  
    49  * check biogrid alignment progress with Antonia
    50 https://sourceforge.net/p/pombase/curation-tasks/258/
    51 
    52  
    53 
    54  * I have a note to discuss
    55    has_output between process and structure phenotypes, e.g. abolished actomyosin contractile ring assembly has_output contractile ring absent
    56    I am not sure what the question is, but I guess there must be one, so I think the first question is to guess the question.
    57 
    58  * how to represent the reintegration assays ?
    59 
    60  * Discuss has_part in relation to annotation propagation in Canto
    61   * [https://sourceforge.net/p/pombase/curation-tool/566/ SF 566] use has_part relationships for ontology term drill-down
    6278
    6379 * gene name descriptions to phenotypes, add to phenotype ontology for searching?
    64 
    6580 * Val- Go through curation tracker high priority items (some are duplicated below)
    66 
    6781 * Val- update on phenotype mapping, where it is, what to do with removed annotations
    68 
    6982 * Antonia- Summarize community curation session quality/ ommissions 
    70 
    71  * Val- viability exercise results (if time but will be quick)
    72    
    73  * what  we do about phenotypes for double mutants (display/query/enrichment etc)
     83 * Val- viability exercise results (query intersection)
    7484
    7585 * PHAF/GPAD/GPI files for export/import etc.
    7686
    77  * Discuss when annotations should inherit over FYPO (or alternative solutions)  https://sourceforge.net/p/pombase/curation-tasks/188/
    78 
    79   == Curation related ontology issues ==
    80 
    81  * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
    82 
    83  
    84 
    85   == Lower priority ==
    8687
    8788 * remapping DNA replication