Changes between Version 49 and Version 50 of CuratorMeeting


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Timestamp:
Nov 11, 2011, 12:30:44 PM (10 years ago)
Author:
gomidori
Comment:

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  • CuratorMeeting

    v49 v50  
    2929== 17/18 October 2011 ==
    3030
    31    * Phenotype specificity When to make a phenotype annotation/ vs GO annotation
    32    https://sourceforge.net/tracker/index.php?func=detail&aid=3421213&group_id=65526&atid=2096431 and https://sourceforge.net/tracker/?func=detail&aid=3400667&group_id=65526&atid=2096431
     31 * Phenotype specificity - When to make a phenotype annotation vs. GO annotation
     32  * see https://sourceforge.net/tracker/index.php?func=detail&aid=3421213&group_id=65526&atid=2096431 and https://sourceforge.net/tracker/?func=detail&aid=3400667&group_id=65526&atid=2096431
     33  * Decided to add terms for phenotypes affecting molecular functions, because it will give us a relatively convenient way to capture the effect of a specific mutation on an activity, especially helpful for identifying catalytic residues
    3334
    34   * Antonia's list
     35 * Antonia's list
    3536 
    3637 * Regulation
     
    4041
    4142= 3/4 Nov =
    42  In rough order of priority:
     43 * Identifying papers for undergraduate workshop, and doing GO annotation (not in tool)
    4344
    44    * Identifying papers for undergraduate workshop
    45    * cleavage and PRO usage for column 17
    46    * Midori OBO-Edit basics (I'd like to be able to view the relations ontology as a graph!)
    47      * loading, viewing, browsing & searching
    48    * Follow up from phenotype workflow
    49      * We have only allowed condition as an annotation_extension, which others has Antonia used (i.e do we need to allow other extensions)
    50    * When to pre-compose in ontology, when to use annotation extensions
    51 see thread in Fwd: Re: sensitive ... (Re: hyphal growth)/ when to use annotation extensions
    52    * Go through curated examples on wiki and check syntax [https://sourceforge.net/apps/trac/pombase/wiki/CuratorTrainingPapers]
    53    * Are all things which can be migrated from the wiki to the curation tool?
    5445 
    55 
    5646= Future Meeting Discussion Items, please move forward if more urgent =
     47In rough order of priority:
    5748
    5849 * Arrange dates for next meeting(s)
    5950
    60  * where does conjugation begin, (is  signalling from pheromone part of conjugation, or regulation of conjugation? Juan says regulation)
     51 * cleavage and PRO usage for column 17
     52 * Midori OBO-Edit basics (I'd like to be able to view the relations ontology as a graph!)
     53   * loading, viewing, browsing & searching
     54 * Follow up from phenotype workflow
     55   * We have only allowed condition as an annotation_extension, which others has Antonia used (i.e do we need to allow other extensions)
     56 * When to pre-compose in ontology, when to use annotation extensions
     57see thread in Fwd: Re: sensitive ... (Re: hyphal growth)/ when to use annotation extensions
     58 * Go through curated examples on wiki and check syntax [https://sourceforge.net/apps/trac/pombase/wiki/CuratorTrainingPapers]
     59 * Are all things which can be migrated from the wiki to the curation tool?
     60 
     61 * where does conjugation begin, (is signalling from pheromone part of conjugation, or regulation of conjugation? Juan says regulation)
    6162
    6263 * Discuss what we need for the curation tool interface wrt
     
    6667
    6768 * Q Do people need more Artemis examples?
    68  * migrate their extensions in the  annotation tool to the non-deprecrated terms
     69 * migrate extensions in the annotation tool to the non-deprecated terms
    6970 * consistency checking exercises of curated papers (in pairs?)
    7071 * controlled curation, still need to cover genome org/pathway/protein sequence feature/warning