Changes between Version 563 and Version 564 of CuratorMeeting


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Timestamp:
Nov 6, 2014, 3:42:34 PM (6 years ago)
Author:
mah79
Comment:

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  • CuratorMeeting

    v563 v564  
    1010
    1111 == Ontology questions ==
     12 * phenotypes at centromeric outer repeats - https://sourceforge.net/p/pombase/fission-yeast-phenotype/1871/
    1213
    1314 == Annotation issues, syntax, procedures, extensions etc ==
    14    
    15   * protein domain specific binding, see example in e-mail
     15 * annotate to protein complex ID (can get from PRO)?
     16  * example: PMID:18723846 has direct assays showing ORC binding to origin DNA, but doesn't distinguish subunits; from other work, it's known that some but not all ORC subunits actually make contact with DNA. Annotate all to DNA binding anyway, with or without contributes_to, or annotate to a complex ID? (I'd prefer the latter but will it break anything?)
     17
     18 * protein domain specific binding, see example in e-mail
    1619
    1720 *  multinucleate https://sourceforge.net/p/pombase/fission-yeast-phenotype/1781/
    1821
    19   * Go through curation tracker, assign people, priorities
     22 * Go through curation tracker, assign people, priorities
    2023
    21   * discuss Rama's question about "response to extensions
    22     * also discuss what is being regulated here .....I don't think it is -ve reg of the transition (this acts through cdc2 and not through trancription)
    23   * PENDING Val will look into this during G1/S cell cycle updates (not to self, background thread is in curation meeting folder)
     24 * discuss Rama's question about "response to extensions
     25  * also discuss what is being regulated here .....I don't think it is -ve reg of the transition (this acts through cdc2 and not through trancription)
     26 * PENDING Val will look into this during G1/S cell cycle updates (not to self, background thread is in curation meeting folder)
    2427
    2528
    … …  
    2932
    3033 * Canto documentation required
    31    * From Scott: provide even one paper and walk the user through entering the paper, the genes and a sample entry.  Then you could also walk through an administrative approval and saving the data to Chado (Kim suggested we start with just a list of bullet points)
    32    * and https://sourceforge.net/p/pombase/curation-tasks/365/
     34  * From Scott: provide even one paper and walk the user through entering the paper, the genes and a sample entry.  Then you could also walk through an administrative approval and saving the data to Chado (Kim suggested we start with just a list of bullet points)
     35  * and https://sourceforge.net/p/pombase/curation-tasks/365/
    3336 * Tidy wiki, move obsolete pages
    3437
    … …  
    3639
    3740 * plan roadshow dates/places 
    38    * Val will get UK lab list (done)
    39    * Midori will draft e-mail (done)
    40    * after BYGa and Toronto, will begin to pin down dates. Antonia will try to set up some whilst at BYG
     41  * Val will get UK lab list (done)
     42  * Midori will draft e-mail (done)
     43  * after BYGa and Toronto, will begin to pin down dates. Antonia will try to set up some whilst at BYG
    4144
    4245 == !PomBase website ==
    … …  
    146149 
    147150
    148   * how to represent the reintegration assays ? (see for example Alper/Partridege and Shanker/PArtridge
    149    * decided for now just to represent the  deletion phenotype , and then do a GO process for the 'reestablishment etc.
     151  * how to represent the reintegration assays ? (see for example !Alper/Partridge and !Shanker/Partridge
     152   * decided for now just to represent the  deletion phenotype, and then do a GO process for the 'reestablishment etc.