Changes between Version 581 and Version 582 of CuratorMeeting


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Timestamp:
Jan 13, 2015, 9:43:11 AM (6 years ago)
Author:
vw253
Comment:

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  • CuratorMeeting

    v581 v582  
    3737
    3838 == Ontology questions ==
     39 
    3940 * phenotypes at centromeric outer repeats - https://sourceforge.net/p/pombase/fission-yeast-phenotype/1871/
    4041 
     
    4445
    4546 == Annotation issues, syntax, procedures, extensions etc ==
     47 
    4648 * annotate to protein complex ID (can get from PRO)?
    47   * example: PMID:18723846 has direct assays showing ORC binding to origin DNA, but doesn't distinguish subunits; from other work, it's known that some but not all ORC subunits actually make contact with DNA. Annotate all to DNA binding anyway, with or without contributes_to, or annotate to a complex ID? (I'd prefer the latter but will it break anything?)
     49 
     50 * example: PMID:18723846 has direct assays showing ORC binding to origin DNA, but doesn't distinguish subunits; from other work, it's known that some but not all ORC subunits actually make contact with DNA. Annotate all to DNA binding anyway, with or without contributes_to, or annotate to a complex ID? (I'd prefer the latter but will it break anything?)
    4851  * same paper: similar issue for annotation extension - cdt1 or cdc18 increase ORC origin binding - put complex ID in has_regulation_target ext?
    4952
    5053 * protein domain specific binding, see example in e-mail
    5154
    52  *  multinucleate https://sourceforge.net/p/pombase/fission-yeast-phenotype/1781/
    5355
    54  * Go through curation tracker, assign people, priorities
    55 
    56  * discuss Rama's question about "response to extensions
     56 * discuss Rama's question about "response to" extensions
    5757  * also discuss what is being regulated here .....I don't think it is -ve reg of the transition (this acts through cdc2 and not through trancription)
    5858 * PENDING Val will look into this during G1/S cell cycle updates (not to self, background thread is in curation meeting folder)