Changes between Version 583 and Version 584 of CuratorMeeting

Timestamp:

Jan 13, 2015, 9:52:23 AM (6 years ago)

Author:

vw253

Comment:

--

CuratorMeeting

@@ -59 +59 @@
 
  * How to capture phenotypes from PMID:15941470? Cdc23S424::Tcs allele has TEV cleavage site introduced after Ser424; TEV protease removes C-terminal 170 amino acids, so when TEV protease is expressed, you see what happens to the cell when Cdc23 is truncated. I've thought of three bad ways to annotate, and no good ways (details stashed in note-to-self file; some also in https://sourceforge.net/p/pombase/fission-yeast-phenotype/1870/). (mah)
+
+ ==  Areas of biology ==
+
+ === Cell Cycle ===
+ 
+  * Discuss regulation of G1/S in relation to  6ff4c9edff12167b (look at annotation in context of all genes in this session)
+  * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
+
+ === Transcription ===
+  * Sushils thesis and e-mail "2 MF transcription terms, sound the same"
+
+ === chromatin organization === 
+
+  * regulation of histone modifications., GO or phenotype? /curs/97535c919f7436fe thread
+ 
+ === Establishment and/or maintenence of cell polarity === 
+
+ * discuss establishment of cell polarity and the signalling network (MOR)
+    (see e-mail Created new session 31b82829d0c47e4d from PMID:23649273 )
 
  == Documentation ==
@@ -124 +143 @@
 
   * gene name descriptions to phenotypes, add to phenotype ontology for searching?
-  * Val- Go through curation tracker high priority items (some are duplicated below)
+ 
   * Val- update on phenotype mapping, where it is, what to do with removed annotations
+
   * Antonia- Summarize community curation session quality/ ommissions  
+
   * Val- viability exercise results (query intersection)
+
   * PHAF/GPAD/GPI files for export/import etc.
+
+ 
+  * discuss response to "cellular response to drug"  http://www.pombase.org/spombe/result/SPAC31G5.13
+
+ 
+
   
+  * advanced search,  better to have just query management ?
+
+ 
+
+
+ =  Later =
+
   * Genetic interactions ontology
 
-  * Discuss regulation of G1/S in relation to  6ff4c9edff12167b
-   (look at annotation in context of all genes in this session)
-
-  * discuss response to "cellular response to drug"  http://www.pombase.org/spombe/result/SPAC31G5.13
-
-  * discuss establishment of cell polarity and the signalling network (MOR)
-    (see e-mail Created new session 31b82829d0c47e4d from PMID:23649273 )
-
-  
-  * transcription related
-    Sushils thesis and e-mail "2 MF transcription terms, sound the same"
-
-  * regulation of histone modifications., GO or phenotype?
-    /curs/97535c919f7436fe thread
-
-  * advanced search,  better to have just query management ?
-
-  * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
-
-
-
- =  Later/ In progress =
-
-* Curating alternative transcripts
+  * Curating alternative transcripts
     * https://sourceforge.net/p/pombase/curation-tasks/31/
     * related - [https://sourceforge.net/p/pombase/curation-tasks/325/ uvi15 UTRs]