Changes between Version 583 and Version 584 of CuratorMeeting


Ignore:
Timestamp:
Jan 13, 2015, 9:52:23 AM (7 years ago)
Author:
vw253
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • CuratorMeeting

    v583 v584  
    5959
    6060 * How to capture phenotypes from PMID:15941470? Cdc23S424::Tcs allele has TEV cleavage site introduced after Ser424; TEV protease removes C-terminal 170 amino acids, so when TEV protease is expressed, you see what happens to the cell when Cdc23 is truncated. I've thought of three bad ways to annotate, and no good ways (details stashed in note-to-self file; some also in https://sourceforge.net/p/pombase/fission-yeast-phenotype/1870/). (mah)
     61
     62 ==  Areas of biology ==
     63
     64 === Cell Cycle ===
     65 
     66  * Discuss regulation of G1/S in relation to  6ff4c9edff12167b (look at annotation in context of all genes in this session)
     67  * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
     68
     69 === Transcription ===
     70  * Sushils thesis and e-mail "2 MF transcription terms, sound the same"
     71
     72 === chromatin organization ===
     73
     74  * regulation of histone modifications., GO or phenotype? /curs/97535c919f7436fe thread
     75 
     76 === Establishment and/or maintenence of cell polarity ===
     77
     78 * discuss establishment of cell polarity and the signalling network (MOR)
     79    (see e-mail Created new session 31b82829d0c47e4d from PMID:23649273 )
    6180
    6281 == Documentation ==
    … …  
    124143
    125144  * gene name descriptions to phenotypes, add to phenotype ontology for searching?
    126   * Val- Go through curation tracker high priority items (some are duplicated below)
     145 
    127146  * Val- update on phenotype mapping, where it is, what to do with removed annotations
     147
    128148  * Antonia- Summarize community curation session quality/ ommissions 
     149
    129150  * Val- viability exercise results (query intersection)
     151
    130152  * PHAF/GPAD/GPI files for export/import etc.
     153
     154 
     155  * discuss response to "cellular response to drug"  http://www.pombase.org/spombe/result/SPAC31G5.13
     156
     157 
     158
    131159 
     160  * advanced search,  better to have just query management ?
     161
     162 
     163
     164
     165 =  Later =
     166
    132167  * Genetic interactions ontology
    133168
    134   * Discuss regulation of G1/S in relation to  6ff4c9edff12167b
    135    (look at annotation in context of all genes in this session)
    136 
    137   * discuss response to "cellular response to drug"  http://www.pombase.org/spombe/result/SPAC31G5.13
    138 
    139   * discuss establishment of cell polarity and the signalling network (MOR)
    140     (see e-mail Created new session 31b82829d0c47e4d from PMID:23649273 )
    141 
    142  
    143   * transcription related
    144     Sushils thesis and e-mail "2 MF transcription terms, sound the same"
    145 
    146   * regulation of histone modifications., GO or phenotype?
    147     /curs/97535c919f7436fe thread
    148 
    149   * advanced search,  better to have just query management ?
    150 
    151   * no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
    152 
    153 
    154 
    155  =  Later/ In progress =
    156 
    157 * Curating alternative transcripts
     169  * Curating alternative transcripts
    158170    * https://sourceforge.net/p/pombase/curation-tasks/31/
    159171    * related - [https://sourceforge.net/p/pombase/curation-tasks/325/ uvi15 UTRs]