Changes between Version 66 and Version 67 of CuratorMeeting


Ignore:
Timestamp:
Dec 1, 2011, 7:59:07 AM (10 years ago)
Author:
val_wood
Comment:

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  • CuratorMeeting

    v66 v67  
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     67== 2 December 2011 ==
     68
     69 * Midori OBO-Edit basics
     70   * loading viewing browsing searching etc (need to be able to view relations ontology)
     71
     72 * Posters for biocuration
     73
     74 * Antonia's questions
     75   * during ->happens_during migration
     76   * plasmid expression   
     77
     78 * How to capture dephosphorylated/dephosphorylation
     79
     80 * Export formats for phenotype etc.
     81   * consider annotation_extension=condition -> condition=?
     82
     83 * RT verses jira
     84
     85 * pombelist FAQ proposal (putting pomblist "experimental items into Susan F's FAQ)
     86
     87 * Val - short term priorities
     88 
     89 * Documentation plan (if time)
     90    * Dropbox/pombase/Documentation_and_help/FAQ_items.txt
     91
     92 * [Pombase-chado] [ pombase-Chado-3440222 ] residue syntax to fix
     93
     94
     95
    6796== NEXT MEETING DATE TDB ==
    68  * Val - short term priorities
     97 * Val - long term priorities
    6998    * review of SF items
    7099    * community curation launch
     100 * revisit expression syntax https://sourceforge.net/apps/trac/pombase/wiki/CapturingGeneExpression
    71101
    72  * Midori OBO-Edit basics (I'd like to be able to view the relations ontology as a graph!)
    73    * loading, viewing, browsing & searching
    74  * pombelist FAQ proposal
    75  * RT verses jira
    76  * Export formats for other data types
    77  * revisit expression syntax https://sourceforge.net/apps/trac/pombase/wiki/CapturingGeneExpression
    78  * Posters for biocuration
    79  * Documentation plan
    80102 * Discuss what we need for the curation tool interface wrt
    81103   * i) annotation extensions
    82104   * ii) annotation transfer of extensions and qualifier
    83  * How to capture dephosphorylated/dephosphorylation
     105 
    84106
    85107
     
    88110In rough order of priority:
    89111
     112 * Using OBO-Edit, part 2: editing & saving
     113   * make a "condition" ontology
    90114
    91115 * cleavage and PRO usage for column 17
     
    99123 * where does conjugation begin, (is signalling from pheromone part of conjugation, or regulation of conjugation? Juan says regulation)
    100124
    101  
    102 
    103125
    104126 * Q Do people need more Artemis examples?
     
    106128 * consistency checking exercises of curated papers (in pairs?)
    107129 * controlled curation, still need to cover genome org/pathway/protein sequence feature/warning
    108  * Go through Source Forge Tracker tasks
    109130 * Discuss "Splitting out complementation"
    110131 * Discuss GO "response to"
     
    116137 * GO annotation redundancy (experimental Vs. non experimental)
    117138 * direct binding
    118  * taxon restictions
     139 * taxon restrictions
    119140 * improving annotation for uncharacterised genes
    120141 * updating products
     
    133154 * Function/process links
    134155 * External sources of GO data
    135  * Using OBO-Edit, part 2: editing & saving
     156
    136157
    137158== Later, after migration to new system ==