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PomBase Curator Meetings
Next Items, in rough order of priority
- gene name descriptions to phenotypes, add to phenotype ontology for searhcing?
- Val- Go through curation tracker high priority items (some are duplicated below)
- Do the mapping for the reciprocal annotation targets
- Midori- update us on annotation of features (chromosome repeats) status (do they have IDs, what next) https://sourceforge.net/p/pombase/curation-tasks/195/
- Val- update on phenotype mapping, where it is, what to do with removed annotations
- Antonia- Summarize community curation session quality/ ommissions
- Val- viability exercise results (if time but will be quick)
- what we do about phenotypes for double mutants (display/query/enrichment etc)
- PHAF/GPAD/GPI files for export/import etc.
- Discuss when annotations should inherit over FYPO (or alternative solutions) https://sourceforge.net/p/pombase/curation-tasks/188/
- no entry into meiosis and cell cycle phenotype https://sourceforge.net/p/pombase/fission-yeast-phenotype/709/
- Should we add GO/protein binding terms for enzyme/substrate combinations?
- should we use the BioGrid? evidence code "biochemical activity" which we don't use at the moment.
- we should try to tag phenotype terms as "npt for direct curation" when we think it should always be possible to be more specific
- This is already deployed in the ontology (but neither Canto nor Chado uses it yet). (-mah)
- most up-to-date set viewable in OBO-Edit; Dropbox/pombase/ontologies/phenotype/FYPO_qc_do_not_annotate_subsets.obo updated weekly
- ticket for chado: https://sourceforge.net/p/pombase/chado/185/
- ticket for canto: https://sourceforge.net/p/pombase/curation-tool/431/
- Start a list somewhere, add possible candidates here:
- If you want any terms flagged as not for any annotation, or not for manual annotation, OPEN A FYPO TICKET. I can't promise to notice or remember lists on wiki pages. (-mah)
- This is already deployed in the ontology (but neither Canto nor Chado uses it yet). (-mah)
- Biogrid has recorded notes and phenotypes of their interaction. Looks pretty useful....can we display/convert?
Lower priority
- Discuss regulation of G1/S in relation to 6ff4c9edff12167b (look at annotation in context of all genes in this session)
- discuss response to "cellular response to drug" http://www.pombase.org/spombe/result/SPAC31G5.13
- discuss establishment of cell polarity and the signalling network (MOR) (see e-mail Create