wiki:CuratorMeeting

Version 449 (modified by val_wood, 8 years ago) (diff)

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PomBase Curator Meetings

PreviousCurationMeetings

Next Items, in rough order of priority

  • Discuss the item about capturing phenotypic observations vs. Phenotypes thread PMID:19033384
  • Canto text for whether a paper contains curatable gene or not
  • canto text, do you want to transfer evidence or condition
  • canto text, Add allele and evidence misleading "add more alleles using this term"
  • Gene page overhaul, discuss how we would like to display annotations to streamline/ hide redundency
  • Discuss things we might need to tell our users (Pombelist) includes but not limited to
    • physical interaction Biogrid vs GO
    • phenotypes vs. processes
    • did you knows
    • Adding gene names
    • preparing HTP datasets
    • community curation demo etc etc
  • evaluating curtain tool, ask people where they expected to go (gene page or summary page)
    • if I have annotated a single gene I expect to stay on that page. I f I have transferred annotations I feel as though I should go back to the summary page. Or is that odd?
  • changes to ontology data layout and sorting on gene page, user configuration
  • SF 1056 abnormal contractile ring organization / uncoupled cytokinetic rings

  • check biogrid alignment progress with Antonia

https://sourceforge.net/p/pombase/curation-tasks/258/

  • plan roadshow dates/places
  • I have a note to discuss has_output between process and structure phenotypes, e.g. abolished actomyosin contractile ring assembly has_output contractile ring absent I am not sure what the question is, but I guess there must be one, so I think the first question is to guess the question.
  • how to represent the reintegration assays ?
  • Discuss has_part in relation to annotation propagation in Canto
    • SF 566 use has_part relationships for ontology term drill-down
  • gene name descriptions to phenotypes, add to phenotype ontology for searching?
  • Val- Go through curation tracker high priority items (some are duplicated below)
  • Val- update on phenotype mapping, where it is, what to do with removed annotations
  • Antonia- Summarize community curation session quality/ ommissions
  • Val- viability exercise results (if time but will be quick)

  • what we do about phenotypes for double mutants (display/query/enrichment etc)
  • PHAF/GPAD/GPI files for export/import etc.
  • Should we add GO/protein binding terms for enzyme/substrate combinations?
    • should we use the BioGRID evidence code "biochemical activity" which we don't use at the moment.
  • Biogrid has recorded notes and phenotypes of their interaction. Looks pretty useful....can we display/convert?

Lower priority

  • Discuss regulation of G1/S in relation to 6ff4c9edff12167b (look at annotation in context of all genes in this session)
  • discuss establishment of cell polarity and the signalling network (MOR) (see e-mail Create