wiki:CuratorTrainingPapers

Version 415 (modified by antonialock, 10 years ago) (diff)

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Papers =

Papers with no PMID
Papers costing ££ to access
Antonias annotations that are not in yet
Some Reviews


Misc Papers


PMIDFirst/final AuthorStatusCuratorcommentssession
21253571-Val-I have added the name, updated the species distribution, and status of clr5 (in Artemis) and mailed Pfam to create a protein family entry for the conserved N-terminal domain
17875641Tsutsumi/Kuno?curated Midori-http://sloth.sysbiol.cam.ac.uk/test/curs/fec781c2e8599d7a
20929775Yamagishi/Watanabe?curatedMidoripending FYPO term additions http://sloth.sysbiol.cam.ac.uk/test/curs/d4e73d1a93ec5860
2175631Nakamura-Kubo/Nakamura?in progress Val-http://sloth.sysbiol.cam.ac.uk/test/curs/4794f2ac68f1b5ba
21813639Ding/Forsburg?curatedMidoriall except multiple mutationshttp://sloth.sysbiol.cam.ac.uk/test/curs/db0ab2817f38d5f6
12791993Pardo/Nurse?uncurated---
17658285Colmenares/Moazed?uncurated---
16787941Krapp/Simanis?uncurated---
16864655Wu/Pollard?uncurated---
15857958Bimbo/Balasubramanian?uncurated---
15755919Mishra/Balasubramanian?uncurated---
21844224Kiely/Winston?in progressval--
21862693Buchheit/Burei?curatedvalcontacted by author.n/a updated in Artemis
21386897 Ren /Gould in progress val contacted by author
21880100 Hiraoko/Haraguchi? in progress val contacted by author
21273250 Labbe? ctr4/5 in progress val -
Saberianfar/Karagiannis?in progress val new gene characterisation
21949882Korvald/ in progress val new gene characterisation
21828039Beaudoin/Labbe?in progress val new gene characterisation
21976488Takeda/complete val cut8 created a session but not added annotations as need extensions, add i) an annotation to capture dimerization, ii) phenotype for abnomal protein localization (of proteasome) in ts allele cut8-566(S201P),iii) cholesterol binding (MF) (residue 1-217, iv trace previous paper which shows ubiquitnated residues are LYS10/11/13/22
16096059Takeda/Yanagida?in progress (proteasome binding res 1-72) cut8val--
20418666Takeda in progress includes cut 8 at stationary phase val--
21712547Hauf in progress val--
21151105Martienssen need to resolve species distribtion of CEN-P orthologs val--
21873461Maraia val--
21900849-pil1, Biogrid queryval--
21984208-hnt3, DONEvalneed to add decreased DNA binding activity for F34A-
21113731Martin-Garcia/Valdivieso?-val-
21091378Andersen/Hartmann?-Petersento doAntonia--
17137508Andersen/Hartmann?-Petersento doAntonia
19682301Paul/Kawamukai?to doAntonia--
19584544Oowatari/Kawamukai?to doAntonia--
12557273Onishi/Fukui?to doAntonia-http://sloth.sysbiol.cam.ac.uk/test/curs/45b4bbb5f0235d01
2900761Kelly/Beach?to doAntonia-http://sloth.sysbiol.cam.ac.uk/test/curs/e8c3b5736c2d1f56
7900424Egel/Nielsen?to doAntonialots of diploidshttp://sloth.sysbiol.cam.ac.uk/test/curs/b00a5065fbeb471
20622008Khorosjutina/Gustafsson?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/77bdec1cc4f8a9e5
20970342Asakawa/Haraguchi?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/011e491e
21725325Li/Cande?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/a3663cd38f1f2a12
21869531Gupta/Kawamukai?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/a6a51043db00c124/
7672243Stuart/Michell?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/72c2e89987736e3
8654750Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/aeb3d0063f6b810
8736868Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/224599b759ca656
8736869Powner/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/14f96251db4cbe9b
8879046Hughes/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/4c6458be418faa18
8879047Powner/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/9ff9e4a1410473cd
8879048Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/af1b2fb92c778beb
9191270Watson/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/b9471202da214e59
9191272Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/d7ecd688fa54e0f
9191273Hughes/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3cd4cea969e25e08
9191274Powner/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/64f7cb8bd028f4bf
9388670Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/7a0647a630a18f51
9388668Watson/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/176dcc6242e7abfe
9450029Watson/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/1ff5b9ffa8f643b
9450053Hughes/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3a1ad75ead7f6d5f
9037770Christensen/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/b00a5065fbeb471
8861202Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/ce4cb6da2a1e760
9032282Imai/Yamamoto?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/8622e3e232348e8d
9236781Christensen/Nielsen?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/bb1e1e8de651f26
9559556Watson/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/e43ab58908bb095
10487925Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/787c309b6034127
11115118Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/fa909d739f78709c
10417652Watson/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/2ad41d1fab1e751c
9599405Ladds/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/4f75e98b55c64601
12172965Didmon/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3d8e1af5e6b75514
2558974Hoffman/Winston?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/d9a59af610cff3eb
1657593Kitamura/Shimoda?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/1065390df3fc736f
20604974Takayama/Toda?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/95c8e050e4eb2cd
10867006van Beest/Clevers?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/465139f68bfd6a53
10923028Xiang/Aves?curatedAntoniadone - Some info on mat1 region for future refhttp://sloth.sysbiol.cam.ac.uk/test/curs/70f0e3fc2a2cb939
2157626Hoffman/Winston?curatedAntoniadone but git paper so might be able to refer backhttp://sloth.sysbiol.cam.ac.uk/test/curs/beb013202ef91cd2
8001792Nocero/Hoffman?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/862994ccfc39b58
1849659Ottilie/Erikson?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/7cf72508fd0e1dcb
21757403Hosomi/Takegawa?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/f6417d0fe2233b57
12882583Chung/Hoe?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/1049db9c4e8922e8
8380233Tanaka/Yamamoto?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/5586aa35c0a6802f
18411404Song/He?curatedAntoniadone, but put into Ensembl HTP pipelinhttp://sloth.sysbiol.cam.ac.uk/test/curs/a6e63b8188666eeb
15657058Sio/Kuno?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3fbb994e3bfea4
9057003Ongusaha/Michell?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3546a54b6fca3ca1
8878976Godfrey/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/b08065e773e2b3b
8654751Slaaby/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/401082b41eab153
8654749Powner/Davey?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/d527fd9cb5fb42a
9693066Niwa/Morikawa?curatedAntoniadonehttp://sloth.sysbiol.cam.ac.uk/test/curs/3e8456a6d6a5d6a0
20579106Harkins/Dolan?curatedAntoniadone - all exp's done using whole cell lysate so cannot annotate to pld1 (they only show pld activity in the cells, it cannot be attributed to a single gene)http://sloth.sysbiol.cam.ac.uk/test/curs/270530574181e6be
20298435Fujita/Yamomoto?-Val--


21727087Kuhl/Bonnefoy?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/da671cd7
21745468Tang/Carr?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/64d2c81c
9191268Davey/Christensen?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/2b3b7ef23078576
2792737Fujioka/Shimoda?curatedAntonia-http://sloth.sysbiol.cam.ac.uk/test/curs/1cfea3361eac50c
17369611Xhemacle/Arcangioli?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/9b5edbe6f0efcb45
14722091Hamasaki-KatagiricuratedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/3b98520c5f6ca92f
21879336Gupta/Kawamukai?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/60d1480f79c0c05b
19606215Guerin/Rokeach?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/f3083f2895ecf659
18621924Matsuo/Marcus?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/3771247b8002271
9191269Slaaby/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/52d277da6d0f8b4
9191271Davis/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/bb15399f563a39a8
9388669Powner/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/843228633c4b7012
10792724Ladds/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/a525406360ac556a
1563351Nielsen/Egel?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/17ddda6fd2aaf627
8196631Kjaerulff/Nielsen?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/4cf5f407a9f3d7f
154790DaveycuratedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/631cdfca46998f0
7975894Aono/Shimoda?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/f3a65af2138844d6
7813430Davey/Matthews?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/8ccb3c8f2d46fe8
8314086Imai/Yamamoto?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/1cfaa3add2d5fd87
7651414Willer/Nielsen?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/24e9f1d9ea02f952
9418887Powner/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/b6bfec3d1b81e412
10931354Davis/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/eb07f91aa716d2b2
15580593Goddard/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/285a46669a679913
15659165Ladds/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/1bdef2cd0551c52
19285552Smith/Ladds?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/c472825384eadfb0
21118960Rodríguez-Sánchez/Hernández?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/f372ba194a5d127c
18059475Shimada/Murakami?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/5fd244fcaaf1c2fa
10438147Won/Yoo? curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/ae55f5308b1fdb21
17248713Meade/Gutz?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/f033fde52b328f44
2328719Nielsen/Egel?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/d47046a87d5d426
17452352Takayama/Takahashi?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/7d59277f413fd328
18077559Takayama/Takahashi?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/440ff0786082ec49
20230746Takayama/Saitoh?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/1f8813e260d783d1
18158900Dunleavy/Allshire?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/e98e46c39b053293
16928959Deng/Kuno?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/9e9fe89a25f614dc
20018864Hamasaki-Katagiri/Ames?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/eeccd430b89acffb
18362178Nakazawa/Yanagida?curatedAntoniaremove annotations?http://sloth.sysbiol.cam.ac.uk/test/curs/42cf6801addc7e5
21680738Burg/Espenshade?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/af743f1eacf15fc
9427748Sugiura/Kuno?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/3083b0a685ce4150
8227198Byrne/Hoffman?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/219e86a87274fe5f
18279662Xin/Qi?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/9276d468f83256bf
21949882Korvald/Alseth?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/cb309c1fc155632b
11937031Noguchi/Russell?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/8e48c14b6338b11
21858190Prevorovsky/Bahler?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/72dd3fcf9aae482b
11461899Chung/Yoo?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/4c58cb4b9203cd31
7923372Chang/Wigler?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/7537db502e936856
21960007Adhikary/Eichman?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/bcb8d4f171dffc70
1448087Ottilie/Erikson?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/293cbd0b3d79a817
16884933Goddard/Davey?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/a0646080ac73a636
1349418Nishi/Beppu?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/1654d009749b8a7b
11470243Yokoyama/Setaka?curatedAntoniaincompletehttp://sloth.sysbiol.cam.ac.uk/test/curs/d6acad95cdc1056
21449051Cabrera/Chang?-(arc3) Antonia-http://sloth.sysbiol.cam.ac.uk/test/curs/85853385252614cd
15075260Cho/Hofmann?curatedAntoniaincompletehttp://oliver0.sysbiol.cam.ac.uk/pombe/curs/67ea8121a7c3e6f0
8769419TO DOAntoniahttp://www.ncbi.nlm.nih.gov/pubmed/8769419
22105743--Val--
22098069--Val--


List of reference genome papers left


ste11
21409593
21307597
20634885
20605454
19417542
19056896community curation
18422613
17927811
17289922
17137508
17046992
map1
9003326
12172965
8668157
fep1
17211681
18223116
19252122
19502236
19915076
20435771
21421748
21531205
gaf1
9714813
ams2
done
mbx1
18057023
20032302
21098635
21098641
matmc
done
prz1
done
fhl1
15777722MidoriTAS
mei4
21449049
21429938
21148298
20531409
19737749
18923505
18815595
17927811
17804800
16823445
16286472
16272747
16024772
sep1
21098641
21098635
20852022
19636559
18931041
18057023
17922236
17596184
17332498
16972065
16317047
15829570
15611619
kfh2
21098641
21098635
19758441
18923505
18815595
18057023
17332498
spp27
12490702


Annotations yet to be implemented


17875641updates DONE as of 2011-08-22


21775631
gene term extension
mug79expression is meiosis specific
mug79requested GO term for meiosis specific spindle pole body GO:0035974


21813639Midori
mcb1GO:0005737extension: throughout cell cycle (see nuclear pore/PMID:20970342 above)
mcb1GO:0005654extension: throughout cell cycle
mcb1GO:0000790extension: throughout cell cycle
mcb1-chk1 genetic interactionalleles OP-mcb1+chk1-deletion, mcb1-D2+chk1-deletion; mcb1-D22+chk1-deletionOP-mcb1+chk1-del phenotype small cells (FYPO:23), abnormal nuc morph (FYPO:62)
mcb1-rad3 genetic interactionalleles OP-mcb1+rad3-deletion, mcb1-D2+rad3-deletion; mcb1-D22+rad3-deletionOP-mcb1+rad3-del phenotype small cells (FYPO:23), abnormal nuc morph (FYPO:62)


20929775Midori
swi6deletionadd phenotype abolished prot loc to cen (annotation_extension=localizes(Hrk1)
swi6deletionadd phenotype abolished prot loc to cen (extension: Pds5)
pds5deletionadd phenotype abolished prot loc to cen (extension: Hrk1)
hht1,hht2,hht3all 3 T3A (triple mutant)phenotype decreased prot loc to cen (extension: Ark1); lagging chromosomes (qualifier=low expressivity)
hta1,hta2both S121A (triple mutant)phenotype decreased prot loc to cen (extension: Ark1); lagging chromosomes (qualifier=low expressivity)
hht1,hht2,hht3,sgo2delall 3 hht T3A + sgo2del (quadruple mutant)phenotypes abolished loc to cen (ext Ark1); lagging chromosomes (qualifier=high expressivity)
hht1,hht2,hht3, hta1,hta2all 3 H3 T3A, both H2 S121A (quintuple mutant)phenotypes abolished loc to cen (ext Ark1); lagging chromosomes (qualifier=high expressivity)
hht1,hht2,hht3all 3 T3A (triple mutant)genetic interaction synthetic lethal sgo2deletion
hht1,hht2,hht3, hta1,hta2all 3 H3 T3A, both H2 S121A (quintuple mutant)genetic interaction synthetic lethal
hht1,hht2,hht3, hta1,hta2all 3 H3 T3A, both H2 S121A (quintuple mutant) genetic interaction synthetic lethal
genetic interactionhrk1, swi6"asynthetic"; check for old same-pathway GO IGI
hht1,hht2,hht3all 3 T3A (triple mutant)genetic interaction "asynthetic" with hrk1deletion
Hrk1-Bir1physical interactionBIR domain of Bir1 (Pfam:PF00653)
hrk1 bub1 genetic interactionalleles hrk1 deletion; bub1-KD (kinase dead, K762R,D900N)phenotype slow growth
hrk1 sgo2 genetic interactionalleles both deletionphenotype slow growth
pds5 bub1 genetic interactionalleles pds5 deletion; bub1-KD (kinase dead, K762R,D900N)phenotype slow growth
pds5 sgo2 genetic interactionalleles both deletionphenotype slow growth
swi6 sgo2 genetic interactionalleles both deletionphenotype slow growth