Changes between Version 13 and Version 14 of DatabaseSanityChecks


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Timestamp:
Nov 17, 2011, 6:42:32 PM (10 years ago)
Author:
val_wood
Comment:

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  • DatabaseSanityChecks

    v13 v14  
    1717 * check that qualifier contains allowed terms (qualifier only described at present)                                                                                                 
    1818 * check PMID is known                                                                                                                                                               
    19  * check that SGD in with field is i) known and ii) matches the SGD code for the ortholog code Y***** listed in ortholog for this gene                                                 
     19 * WITH FIELD
     20   * check that SGD in with field is i) known and ii) matches the SGD code for the ortholog code Y***** listed in ortholog for this gene                                                 
     21   * pipes are only allowed in the with field with the GO term "protein binding, bridging".
     22
    2023 * check that GO term and ID match (DONE)                                                                                                                                             
    2124 * check for UTR to CDS overlaps and check for gaps between UTR and CDS         (non urgent or not required as is checked for by Ensembl loader)