Changes between Version 14 and Version 15 of ExternalGOData


Ignore:
Timestamp:
Jul 7, 2015, 4:33:24 PM (5 years ago)
Author:
mah79
Comment:

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  • ExternalGOData

    v14 v15  
    33
    44|| File || From || Contains/notes||
    5 || go_proc.tex || pombe-embl/external_go_data || static file NAS and IEP, can all be filtered ||
    6 || go_func.tex || pombe-embl/external_go_data || static file NAS only, can all be filtered ||
    7 || go_comp.tex || pombe-embl/external_go_data || static file NAS only, can all be filtered ||
    8 || GO_ORFeome_localizations2.tex || pombe-embl/external_go_data || static file cellular component IDA annotations from the while genome localization study, no filtering||
    9 || GO_ORFeome_localizations2_deleted.tex || pombe-embl/external_go_data || File of annotations removed (false positives) could later be added to the database with a "flag" and not be shown, but no need to do anythig with these ||
     5|| go_proc.tex || pombe-embl/external_data/external_go_data || static file NAS and IEP, can all be filtered ||
     6|| go_func.tex || pombe-embl/external_data/external_go_data || static file NAS only, can all be filtered ||
     7|| go_comp.tex || pombe-embl/external_data/external_go_data || static file NAS only, can all be filtered ||
     8|| GO_ORFeome_localizations2.tex || pombe-embl/external_data/external_go_data || static file cellular component IDA annotations from the while genome localization study, no filtering||
     9|| GO_ORFeome_localizations2_deleted.tex || pombe-embl/external_data/external_go_data || File of annotations removed (false positives) could later be added to the database with a "flag" and not be shown, but no need to do anything with these ||
    1010
    11 || From_curation_tool ||  pombe-embl/external_go_data || Early annotations exported from the annotation tool, various experimental annotation codes, no filtering ||
    12 ||gene_association.pombase.inf.gaf||http://www.geneontology.org/scratch/gaf-inference/gene_association.pombase.inf.gaf || Assigned by GOC, drop all annotation periodically and update. These should all be pe filtered so there shouldn't be any redundancy (need to check with Chris) ||
     11|| From_curation_tool ||  pombe-embl/external_data/external_go_data || Early annotations exported from the annotation tool, various experimental annotation codes, no filtering ||
     12||gene_association.pombase.inf.gaf||http://build.berkeleybop.org/job/gaf-check-pombase/lastSuccessfulBuild/artifact/gene_association.pombase.inf.gaf || Assigned by GOC, drop all annotation periodically and update. These should all be prefiltered so there shouldn't be any redundancy (need to check with Chris) ||
    1313||gene_association.paint_pombase.gaf||http://viewvc.geneontology.org/viewvc/GO-SVN/trunk/gene-associations/submission/paint/pre-submission/gene_association.paint_pombase.gaf|| Omit file for now, it doesn't add much new data and there are annotation issues with the current file...we get this file from the GO checkout When we include, need to filter "NOT" annotation||
    1414||gene_association.GeneDB_Spombe.ics.gaf|| GOA file from ???||-||