Changes between Version 14 and Version 15 of FissionYeastPhenotypeOntology


Ignore:
Timestamp:
Jul 7, 2015, 4:29:27 PM (5 years ago)
Author:
mah79
Comment:

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  • FissionYeastPhenotypeOntology

    v14 v15  
    77
    88== Availability ==
    9 FYPO is maintained in a Subversion repository hosted at !SourceForge:
     9FYPO is maintained in a Subversion repository hosted at !GitHub:
    1010
    11 https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/
     11https://github.com/pombase/fypo
    1212
    13 The main phenotype_ontology directory contains the editors' working file (fypo_edit.obo). FYPO curators use [https://code.google.com/p/owltools/wiki/OortIntro Oort] to manage the FYPO release process.
     13The main phenotype_ontology directory contains the editors' working file (fypo_edit.obo). FYPO curators use [https://github.com/owlcollab/owltools Oort] to manage the FYPO release process.
    1414
    1515Files generated by Oort in OBO and OWL formats are archived in date-stamped releases in the releases subdirectory of the SVN repository. The current versions of these files are also available in the /releases/latest/ directory (and via HTTP at the curation.pombase.org site).
     
    1818
    1919||File||Description||OBO format||OWL||
    20 ||fypo.*||Main FYPO file from Oort; implied links asserted||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.obo fypo.obo]||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.owl fypo.owl]||
    21 ||fypo-merged.*||implied links not asserted||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo-merged.obo fypo-merged.obo]||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo-merged.owl fypo-merged.owl]||
    22 ||fypo-simple.*||logical definitions omitted||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo-simple.owl fypo-simple.owl]||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/ fypo-simple.obo]||
    23 ||fypo-basic.obo||includes only is_a links||[https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo-basic.obo fypo-basic.obo]||N/A||
     20||fypo.*||Main FYPO file from Oort; implied links asserted||[https://github.com/pombase/fypo/blob/master/release/fypo.obo fypo.obo]||[https://github.com/pombase/fypo/blob/master/release/fypo.owl fypo.owl]||
     21||fypo-merged.*||implied links not asserted||[https://github.com/pombase/fypo/blob/master/release/fypo-merged.obo fypo-merged.obo]||[https://github.com/pombase/fypo/blob/master/release/fypo-merged.owl fypo-merged.owl]||
     22||fypo-simple.*||logical definitions omitted||[https://github.com/pombase/fypo/blob/master/release/fypo-simple.obo fypo-simple.obo]||[https://github.com/pombase/fypo/blob/master/release/fypo-simple.owl fypo-simple.owl]||
     23||fypo-basic.obo||includes only is_a links||[https://github.com/pombase/fypo/blob/master/release/fypo-basic.obo fypo-basic.obo]||N/A||
    2424
    2525== Content and Structure ==
     
    4545
    4646== Tracker ==
    47 https://sourceforge.net/p/pombase/fission-yeast-phenotype/
     47https://github.com/pombase/fypo/issues
    4848
    4949== Citation ==