Changes between Version 18 and Version 19 of GOAnnotationGuidelines


Ignore:
Timestamp:
Feb 20, 2015, 1:52:20 PM (6 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v18 v19  
    1111
    1212== GO Consortium Documentation - Annotation ==
     13
    1314All of the [http://www.geneontology.org/GO.contents.doc.shtml#annotation general annotation documentation and recommendations] on GO web and wiki pages are applicable. Links to some of the most useful:
    1415
     
    3637
    3738== Finding and Requesting GO Terms ==
     39
    3840 * Ways to search for GO terms:
    3941  * directly in the curation tool
    4042  * online GO browsers - [http://www.ebi.ac.uk/QuickGO/ QuickGO] or [http://amigo.geneontology.org/ AmiGO]
    41   * install OBO-Edit (the least convenient option, but the most sophisticated search interface)
    42  * If you have trouble finding an existing term, request synonyms from GO ([https://sourceforge.net/tracker/?group_id=36855&atid=440764 SF tracker]) to make the search easier in future
    43  * If you have a problem locating a term in the curation tool using a string which was *already* a synonym in GO, make a note in [wiki:Lucene_issues Problems identifying ontology terms]. Kim can use this to configure the search to give improved results.
     43 
    4444 * Requesting new terms
    4545  * If the term you need follows one of the patterns supported by !TermGenie, you can use it and get a stable ID immediately
    4646   * [http://go.termgenie.org/ TermGenie main page]
    4747   * [http://go.termgenie.org/help/index.html TermGenie GO help] (includes how to set up user access)
    48   * Otherwise, request your term(s) on the [https://sourceforge.net/p/geneontology/ontology-requests/ GO Ontology Requests tracker] at !SourceForge
    49    * Any information you can include -- name, text definition, parent(s), synonyms, reference, etc. -- will be much appreciated by the GO editors
     48   * Or request your term(s) on the [https://sourceforge.net/p/geneontology/ontology-requests/ GO Ontology Requests tracker] at !SourceForge  include -- name, text definition, parent(s), synonyms, reference, etc.
    5049
    5150== GO Annotation Extensions ==
     51
    5252GO annotation extensions capture specificity that would be undesirable in the ontology.
    5353 * When to use an extension versus requesting a new term?