Changes between Version 42 and Version 43 of GOAnnotationGuidelines


Ignore:
Timestamp:
Feb 25, 2015, 1:11:45 PM (6 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v42 v43  
    1212 
    1313  * [http://www.geneontology.org/GO.annotation.conventions.shtml#downstream Downstream processes]
    14   * [http://wiki.geneontology.org/index.php/Transcription Transcription Overhaul details]
     14
    1515  * [http://www.geneontology.org/GO.annotation.conventions.shtml#Binding_guidelines 'Binding' terms in MF]
    1616   * [http://wiki.geneontology.org/index.php/Annotation_consistency_:_ChIP_experiments chromatin immunoprecipitation (ChIP) experiments NOT promoter binding]
     
    8686
    8787 * Transcription
     88    * [http://wiki.geneontology.org/index.php/Transcription Transcription Overhaul details]
    8889  * See "Transcription factors" under Molecular Function below - includes example
    8990   * Annotate to regulation of transcription (with extensions as appropriate) only if there isn't enough data to support annotating to a transcription factor MF term (descendant of GO:0003700 sequence-specific DNA binding transcription factor activity); if there is a transcription factor MF annotation, a transcription regulation BP annotation will be inferred by transitivity
     
    115116 
    116117  * Transcription factors - wherever possible (i.e. make exceptions only when data don't support this):
     118   * [http://wiki.geneontology.org/index.php/Transcription Transcription Overhaul details]
    117119  * Remember to annotate to both a transcription factor activity term and a DNA binding term, because otherwise the TF won't be annotated to DNA binding, because the terms are connected by has_part in GO.
    118120   * DNA binding: annotate to descendant of transcription regulatory region sequence-specific DNA binding (GO:0000976), e.g. RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978) is often the right one