Changes between Version 43 and Version 44 of GOAnnotationGuidelines


Ignore:
Timestamp:
Feb 25, 2015, 1:12:42 PM (6 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v43 v44  
    1313  * [http://www.geneontology.org/GO.annotation.conventions.shtml#downstream Downstream processes]
    1414
    15   * [http://www.geneontology.org/GO.annotation.conventions.shtml#Binding_guidelines 'Binding' terms in MF]
    16    * [http://wiki.geneontology.org/index.php/Annotation_consistency_:_ChIP_experiments chromatin immunoprecipitation (ChIP) experiments NOT promoter binding]
    17    * In !PomBase, we'll only annotate to a GO 'protein binding' term if there's strong evidence that a physical interaction is direct, e.g. using purified proteins. Otherwise, we'll just do the BioGRID interaction annotation.
     15
    1816 * Evidence
    1917  * [http://www.geneontology.org/GO.evidence.shtml GO evidence code documentation]
     
    112110==== Molecular Function ====
    113111
     112   * [http://www.geneontology.org/GO.annotation.conventions.shtml#Binding_guidelines 'Binding' terms in MF]
     113   * [http://wiki.geneontology.org/index.php/Annotation_consistency_:_ChIP_experiments chromatin immunoprecipitation (ChIP) experiments NOT promoter binding]
     114   * In !PomBase, we'll only annotate to a GO 'protein binding' term if there's strong evidence that a physical interaction is direct, e.g. using purified proteins. Otherwise, we'll just do the BioGRID interaction annotation.
    114115  * Protein binding - annotate to GO:0005515 (or an allowable descendant) if there is enough information to conclude that there is a direct physical interaction. Otherwise just make BioGRID interaction annotation(s).
    115116  * DNA binding  - for sequence-specific DNA binding, use an annotation extension with 'occurs_at' and a SO ID (also see [#GOAnnotationExtensions] above)