Changes between Version 62 and Version 63 of GOAnnotationGuidelines


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Timestamp:
Feb 25, 2015, 5:31:07 PM (7 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v62 v63  
    5858=== Biological Process ===
    5959
    60   *  Every process should have a discrete '''beginning''' and '''end''', and these should be clearly stated in the process term definition. Note, however, that this work is still in progress for GO.
     60   *  Every process should have a discrete '''beginning''' and '''end''', and these should be clearly stated in the process term definition. Note, however, that this work is still in progress for GO.
    6161
    6262   *  When to make a GO process  annotation 
    6363      *   GO or phenotype
    64       *
     64     
    6565
    6666    * Regulation
    67        * Lots of ongoing discussion among !PomBase curators and with other GO annotators, about when to annotate to regulation terms and when not.
    68        * This is also connected with filling in start and end details for the process terms that still need them. Conclusions will be posted or linked here. (2012-06-07)
    69        * [http://www.geneontology.org/GO.annotation.conventions.shtml#regulationTerms Regulation]
    70 
    71  * Transcription
     67       *  [http://www.geneontology.org/GO.annotation.conventions.shtml#regulationTerms  GOC Regulation]
     68       *  Lots of ongoing discussion among !PomBase curators and with other GO annotators, about when to annotate to regulation terms and when not.
     69       *  This is also connected with filling in start and end details for the process terms that still need them.
     70       
     71    * Transcription
    7272    * [http://wiki.geneontology.org/index.php/Transcription Transcription Overhaul details]
    73   * See "Transcription factors" under Molecular Function below - includes example
     73    * For  "Transcription factors" see Molecular Function below
    7474   * Annotate to regulation of transcription (with extensions as appropriate) only if there isn't enough data to support annotating to a transcription factor MF term (descendant of GO:0003700 sequence-specific DNA binding transcription factor activity); if there is a transcription factor MF annotation, a transcription regulation BP annotation will be inferred by transitivity
    7575  * All fission yeast annotations for RNAi so far should be to the term [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0031048 chromatin silencing by small RNA (GO:0031048)]