Changes between Version 66 and Version 67 of GOAnnotationGuidelines


Ignore:
Timestamp:
Feb 25, 2015, 5:41:59 PM (6 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v66 v67  
    7878            * Mam2 in contrast is only annotated to signal transduction involved in positive regulation of sporulation.
    7979
    80  * Transport/Localization
    81   * Check that the appropriate "intracellular" term is used, e.g, [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006886 intracellular protein transport (GO:0006886)]
    82   * Note the distinction between "transport" and "localization" and always use the appropriate branch. Localization is more general and can involve establishment or maintenance at a specific location, whereas transport involves directed movement
    83   * Note that all transmembrane transporters should have an annotation to the process of [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0055085 transmembrane transport (GO:0055085)].
    84   * Note that [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006913 nucleocytoplasmic transport (GO:0006913)] is NOT "transmembrane transport", as the lipid bilayer is not traversed.
    85 
    86 
    87   * Response to ..... terms
    88    We do not usually annotate to "response to stress" terms unless we can say specifically which process is altered
    89    *   i.e. regulation of cytoplasmic translation in response to stress See also GOC documentation [http://www.geneontology.org/GO.annotation.conventions.shtml#response 'Response to' BP terms]
     80    * Transport and Localization
     81       * Note the distinction between "transport" and "localization" and always use the appropriate branch. Localization is more general and can involve establishment or maintenance at a specific location, whereas transport involves directed movement
     82       * Note that all transmembrane transporters should have an annotation to the process of [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0055085 transmembrane transport (GO:0055085)].
     83 
     84    * Response to .....
     85      * We do not usually annotate to "response to stress" terms unless we can say specifically which process is alteredmi.e. regulation of cytoplasmic translation in response to stress
     86      * See also GOC documentation [http://www.geneontology.org/GO.annotation.conventions.shtml#response 'Response to' BP terms]
    9087 
    91   * Cell polarity related
    92   * If you are annotating a process that directly affects cell shape, select one of the terms that specifies "regulating cell shape", e.g. [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0071963 establishment or maintenance of cell polarity regulating cell shape (GO:0071963)] or one of its descendants.
     88    * Cell polarity related
     89       * If you are annotating a process that directly affects cell shape, select one of the terms that specifies "regulating cell shape", e.g. [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0071963 establishment or maintenance of cell polarity regulating cell shape (GO:0071963)] or one of its descendants.
    9390
    9491