Changes between Version 76 and Version 77 of GOAnnotationGuidelines


Ignore:
Timestamp:
Feb 25, 2015, 6:16:00 PM (6 years ago)
Author:
vw253
Comment:

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  • GOAnnotationGuidelines

    v76 v77  
    112112
    113113=== Gene Product Forms, or "Column 17" ===
    114  * Identifier for the specific form of a gene product
    115  * Background: [http://wiki.geneontology.org/index.php/GAF_Spliceform_Column_Proposal GO wiki page on spliceforms and column 17]
    116  * For modified forms of proteins (e.g. phosphorylated, methylated) use Protein Ontology entries (PR:[id])
     114 
     115  * Identifier for the specific form of a gene product
     116  * Background: [http://wiki.geneontology.org/index.php/GAF_Spliceform_Column_Proposal GO wiki page on spliceforms and column 17]
     117  * For modified forms of proteins (e.g. phosphorylated, methylated) use Protein Ontology entries (PR:[id])
    117118  * [http://pir.georgetown.edu/projects/pro/pro_wv.obo pre-release (i.e. latest) version of the Protein Ontology]
    118119  * Tracker for term requests [http://pir.georgetown.edu/cgi-bin/pro/race_pro]
    119120  * Examples: [https://sourceforge.net/tracker/index.php?func=detail&aid=3311095&group_id=65526&atid=2096329]
    120  * splice variants can use !PomBase splice variant IDs (no examples curated yet)
    121  * can also use !UniProt IDs
     121  * splice variants can use !PomBase splice variant IDs (no examples curated yet)
    122122
    123123=== GO supplementary IC (inferred from curator) annotation ===
    124  * Make any annotation (IC) which can be inferred by a curator but are not implicitly annotated by transitivity (i.e. because not included in the term ancestry). For example,
     124  * Make any annotation (IC) which can be inferred by a curator but are not implicitly annotated by transitivity (i.e. because not included in the term ancestry). For example,
    125125  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0000808 origin recognition complex (ORC; GO:0000808)] subunits can also get:
    126    * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0031261 DNA replication preinitiation complex (GO:0031261)]
    127    * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0005656 pre-replicative complex (GO:0005656)]
    128    * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0043596 nuclear replication fork (GO:0043596)]
     126  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0031261 DNA replication preinitiation complex (GO:0031261)]
     127  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0005656 pre-replicative complex (GO:0005656)]
     128  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0043596 nuclear replication fork (GO:0043596)]
    129129  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0032049 cardiolipin biosynthesis (GO:0032049)] implies [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0007006 mitochondrial membrane organization (GO:0007006)]
    130  * Also check whether any of these can be experimentally supported by data in the paper
    131 
    132 
    133 
     130  * Also check whether any of these can be experimentally supported by data in the paper
    134131
    135132=== Making GO process annotations from IMP ===