Changes between Version 76 and Version 77 of GOAnnotationGuidelines

Timestamp:

Feb 25, 2015, 6:16:00 PM (6 years ago)

Author:

vw253

Comment:

--

GOAnnotationGuidelines

@@ -112 +112 @@
 
 === Gene Product Forms, or "Column 17" ===
- * Identifier for the specific form of a gene product
- * Background: [http://wiki.geneontology.org/index.php/GAF_Spliceform_Column_Proposal GO wiki page on spliceforms and column 17]
- * For modified forms of proteins (e.g. phosphorylated, methylated) use Protein Ontology entries (PR:[id])
+  
+  * Identifier for the specific form of a gene product
+  * Background: [http://wiki.geneontology.org/index.php/GAF_Spliceform_Column_Proposal GO wiki page on spliceforms and column 17]
+  * For modified forms of proteins (e.g. phosphorylated, methylated) use Protein Ontology entries (PR:[id])
   * [http://pir.georgetown.edu/projects/pro/pro_wv.obo pre-release (i.e. latest) version of the Protein Ontology]
   * Tracker for term requests [http://pir.georgetown.edu/cgi-bin/pro/race_pro] 
   * Examples: [https://sourceforge.net/tracker/index.php?func=detail&aid=3311095&group_id=65526&atid=2096329]
- * splice variants can use !PomBase splice variant IDs (no examples curated yet) 
- * can also use !UniProt IDs
+  * splice variants can use !PomBase splice variant IDs (no examples curated yet) 
 
 === GO supplementary IC (inferred from curator) annotation ===
- * Make any annotation (IC) which can be inferred by a curator but are not implicitly annotated by transitivity (i.e. because not included in the term ancestry). For example,
+  * Make any annotation (IC) which can be inferred by a curator but are not implicitly annotated by transitivity (i.e. because not included in the term ancestry). For example,
   * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0000808 origin recognition complex (ORC; GO:0000808)] subunits can also get:
-   * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0031261 DNA replication preinitiation complex (GO:0031261)]
-   * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0005656 pre-replicative complex (GO:0005656)]
-   * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0043596 nuclear replication fork (GO:0043596)]
+  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0031261 DNA replication preinitiation complex (GO:0031261)]
+  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0005656 pre-replicative complex (GO:0005656)]
+  * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0043596 nuclear replication fork (GO:0043596)]
   * [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0032049 cardiolipin biosynthesis (GO:0032049)] implies [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0007006 mitochondrial membrane organization (GO:0007006)]
- * Also check whether any of these can be experimentally supported by data in the paper
-
-
-
+  * Also check whether any of these can be experimentally supported by data in the paper
 
 === Making GO process annotations from IMP ===