wiki:GOslims

Version 16 (modified by vw253, 3 years ago) (diff)

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Standard PomBase? GO slim IDs

See http://preview.pombase.org/browse-curation/fission-yeast-go-slim-terms

GO:0007031 GO:0030437 GO:0023052 GO:0030036 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0000070 GO:0032543 GO:0002181 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0006605 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0006766 GO:0006325 GO:0000226

Slim Set used for unknown project

The PomBase? slim set is too specific for many organisms annotation

swapped

  • GO:0002181 cytoplasmic translation and GO:0032543 mitochondrial translation for GO:0006412 translation
  • GO:0030036 actin cytoskeleton organization and GO:0000226 microtubule cytoskeleton organization for GO:0007010 cytoskeleton organization
  • GO:0000070 mitotic sister chromatid segregation and GO:0007059 chromosome segregation
    • GO:0006605 protein targetting GO:0006913 nucleocytoplasmic transport GO:0055085 transmembrane transport for GO:0006810 transport
  • GO:1901990 regulation of mitotic cell cycle phase transition for GO:0000278 mitotic cell cycle

GO:0000278 GO:0006810 GO:0007010 GO:0006412 GO:0007031 GO:0030437 GO:0023052 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0007059 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:1901990 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006913 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0055085 GO:0006766 GO:0006325

===== add these terms with small numbers of annotations not mapped to slim in either or both organisms GO:0006751 glutathione catabolic process GO:0000920 cell separation after cytokinesis GO:0006915 apoptotic process GO:0000493 box H/ACA snoRNP assembly GO:0070941 eisosome assembly GO:0007124 pseudohyphal growth GO:0009305 protein biotinylation GO:0018343 protein farnesylation GO:0000128 flocculation GO:0034389 lipid particle organization

Uninformative terms in SGD slim GO:0042221 response to chemical GO:0006974 cellular response to DNA damage stimulus GO:0006979 response to oxidative stress GO:0006970 response to osmotic stress GO:0009408 response to heat GO:0042594 response to starvation GO:0031399 regulation of protein modification process GO:0018193 peptidyl-amino acid modification GO:0070647 protein modification by small protein conjugation or removal GO:0016570 histone modification GO:0006468 protein phosphorylation GO:0006470 protein dephosphorylation GO:0043543 protein acylation GO:0016310 phosphorylation GO:0016311 dephosphorylation GO:0055114 oxidation-reduction process GO:0006464 cellular protein modification process

New "non specific " Slim including uninformative terms and specific terms

GO:0042221 GO:0006974 GO:0006979 GO:0006970 GO:0009408 GO:0042594 GO:0031399 GO:0018193 GO:0070647 GO:0016570 GO:0006468 GO:0006470 GO:0043543 GO:0016310 GO:0016311 GO:0055114 GO:0006464

GO:0000278 GO:0006810 GO:0007010 GO:0006412 GO:0007031 GO:0030437 GO:0023052 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0007059 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:1901990 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006913 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0055085 GO:0006766 GO:0006325

GO:0006751 GO:0000920 GO:0006915 GO:0000493 GO:0070941 GO:0007124 GO:0009305 GO:0018343 GO:0000128 GO:0034389

Slim Set used for Matrix project