Standard PomBase? GO slim IDs

See ​http://preview.pombase.org/browse-curation/fission-yeast-go-slim-terms

GO:0140053 GO:0007031 GO:0030437 GO:0023052 GO:0030036 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0000070 GO:0002181 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0006605 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0006766 GO:0006325 GO:0000226 GO:0016073 GO:0006915 GO:0006790 GO:0055065 GO:0140056

Slim Set used for unknown project

The PomBase? slim set is too specific for many organisms annotation

swapped

• GO:0002181 cytoplasmic translation for GO:0006412 translation
• GO:0030036 actin cytoskeleton organization and GO:0000226 microtubule cytoskeleton organization for GO:0007010 cytoskeleton organization
• GO:0000070 mitotic sister chromatid segregation and GO:0007059 chromosome segregation
• GO:0006605 protein targetting GO:0006913 nucleocytoplasmic transport GO:0055085 transmembrane transport for GO:0006810 transport
• GO:1901990 regulation of mitotic cell cycle phase transition for GO:0000278 mitotic cell cycle

GO:0000278 GO:0006810 GO:0007010 GO:0006412 GO:0007031 GO:0030437 GO:0023052 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0007059 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:1901990 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006913 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0055085 GO:0006766 GO:0006325 GO:0016073 GO:0006915 GO:0006790 GO:0055065 GO:0140056

===== add these terms with small numbers of annotations not mapped to slim in either or both organisms

GO:0000920 cell separation after cytokinesis GO:0000493 box H/ACA snoRNP assembly GO:0070941 eisosome assembly GO:0007124 pseudohyphal growth GO:0009305 protein biotinylation (should not be needed soon) GO:0018342 protein prenylation GO:0000128 flocculation GO:0034389 lipid particle organization GO:0034276 kynurenic acid biosynthetic process GO:0007032 endosome organisation GO:0030091 protein repair ( needs a new slim term )

Uninformative terms/annotations in SGD slim

• GO:0042221 response to chemical
• GO:0006974 cellular response to DNA damage stimulus
• GO:0006979 response to oxidative stress
• GO:0006970 response to osmotic stress
• GO:0009408 response to heat
• GO:0042594 response to starvation
• GO:0031399 regulation of protein modification process
• GO:0018193 peptidyl-amino acid modification
• GO:0070647 protein modification by small protein conjugation or removal
• GO:0016570 histone modification
• GO:0006468 protein phosphorylation
• GO:0006470 protein dephosphorylation
• GO:0043543 protein acylation
• GO:0016310 phosphorylation
• GO:0016311 dephosphorylation
• GO:0055114 oxidation-reduction process
• GO:0006464 cellular protein modification process
• GO:0043086 negative regulation of catalytic activity
• GO:0070417 cellular response to cold
• GO:0006796 phosphate-containing compound metabolic process

Slim Set used for Matrix project including uninformative terms and specific terms

Non specific terms

GO:0042221 GO:0006974 GO:0006979 GO:0006970 GO:0009408 GO:0042594 GO:0031399 GO:0018193 GO:0070647 GO:0016570 GO:0006468 GO:0006470 GO:0043543 GO:0016310 GO:0016311 GO:0055114 GO:0006464 GO:0043086 GO:0070417 GO:0006796

standard slim with swaps

GO:0000278 GO:0006810 GO:0007010 GO:0006412 GO:0007031 GO:0030437 GO:0023052 GO:0006520 GO:0032200 GO:0016074 GO:0005975 GO:0070647 GO:0007059 GO:0030163 GO:0055086 GO:0006351 GO:0006260 GO:0071554 GO:1901990 GO:0140013 GO:0006461 GO:0071941 GO:0006355 GO:0006399 GO:0042254 GO:0006457 GO:0006486 GO:0016071 GO:0007005 GO:0006310 GO:1901135 GO:0000747 GO:0006913 GO:0006091 GO:0006914 GO:0098754 GO:0016192 GO:0051186 GO:0007163 GO:0061024 GO:0006629 GO:0006281 GO:0000281 GO:0051604 GO:0007155 GO:0055085 GO:0006766 GO:0006325 GO:0016073 GO:0006915 GO:0006790 GO:0055065 GO:0140056

add for greater coverage

GO:0000920 GO:0000493 GO:0070941 GO:0007124 GO:0009305 GO:0018342 GO:0000128 GO:0034389 GO:0034276 GO:0007032 GO:0030091