Changes between Version 8 and Version 9 of ListOfRelationsForGO


Ignore:
Timestamp:
Jul 31, 2015, 1:50:47 PM (6 years ago)
Author:
vw253
Comment:

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  • ListOfRelationsForGO

    v8 v9  
    44
    55||relation||brief explanation||example annotation||
    6 ||occurs_at||a sequence feature where a BP happens, or a location where a BP happens  (note: used to be acts_at, then changed to occurs_at for BP and has_substrate for MF); NOTE: do not use occurs_at with CC annotations||hip3 GO:0030702 occurs_at(SO:0001799) = involved in 'chromatin silencing at centromere' at 'regional_centromere_outer_repeat_region'  rtn1 GO:0006897 occurs_at(GO:0032153) = 'endocytosis' at 'cell division site'||
     6||occurs_at||a sequence feature where a BP happens, or a location where a BP happens  (note: used to be acts_at, then changed to occurs_at for BP and has_substrate for MF); NOTE: do not use occurs_at with CC annotations||hip3 GO:0030702 occurs_at(SO:0001799) = involved in 'chromatin silencing at centromere' at 'regional_centromere_outer_repeat_region'  'endocytosis' occurs_at(cell division site)||
    77||(continued)||a sequence feature where DNA binding takes place||prz1 GO:0000978 occurs_at(SO:0001865) = has that crazy long-winded '... promoter proximal ... DNA binding' activity at 'CDRE_motif'||
    88||exists_during||use for localization to CC at particular time (e.g. cell cycle phase or when another process is occurring)||cdr2 GO:0071341 exists_during(GO:0000085) = localizes to 'medial cortical node' during 'G2 phase of mitotic cell cycle'||