Changes between Version 113 and Version 114 of MatrixProject


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Timestamp:
Nov 7, 2012, 11:26:19 AM (9 years ago)
Author:
val_wood
Comment:

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  • MatrixProject

    v113 v114  
    1313 * Identify annotation errors (curated and automated)
    1414   * Allows rapid detection of incorrect mappings
    15    * Allows detection of "Indirect upstream effects". One process acts upstream of another and if the upstream process is "broken" there is an indirect downstream effect, these are usually annotated from mutant phenotypes. Would the term x involved in y make sense (for example splicing involved in embroyonic development)? if not, probably the effect is indirect (I'm not sure if this is a good criteria to distinguish but it sounds as though it could be?). (Note: PomBase and SGD already do not annotate these as biological processes, they are captured with "phenotype" annotations)
     15   * Allows detection of "Indirect downstream effects". One process acts upstream of another and if the upstream process is "broken" there is an indirect downstream effect, these are usually annotated from mutant phenotypes. Would the term x involved in y make sense (for example splicing involved in embroyonic development)? if not, probably the effect is indirect (I'm not sure if this is a good criteria to distinguish but it sounds as though it could be?). (Note: PomBase and SGD already do not annotate these as biological processes, they are captured with "phenotype" annotations)
    1616     * Examples:
    1717     * splicing -> cell cycle)