Changes between Version 164 and Version 165 of MatrixProject


Ignore:
Timestamp:
Jan 3, 2013, 6:39:28 PM (9 years ago)
Author:
val_wood
Comment:

--

Legend:

Unmodified
Added
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  • MatrixProject

    v164 v165  
    183183||GO:0006412|| GO:0030437 || ascospore formation || NO OVERLAP ||S.p; S.c; M.m (n/a)||
    184184||GO:0006412|| GO:0005975 || carbohydrate metabolic process || LOTS ||-||
    185 ||GO:0006412|| GO:0007155 || cell adhesion || MOUSE LOTS ||S.p.||
    186 ||GO:0006412|| GO:0006520 || cellular amino acid metabolic process || - ||-||
     185||GO:0006412|| GO:0007155 || cell adhesion || LOTS IN MOUSE ||S.p.||
     186||GO:0006412|| GO:0006520 || cellular amino acid metabolic process || SEE ABOVE ||-||
    187187||GO:0006412|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p; S.c; M.m||
    188188||GO:0006412|| GO:0016568 || chromatin modification || LOTS ||-||
    189 ||GO:0006412|| GO:0051276 || chromosome organization  || - ||-||
     189||GO:0006412|| GO:0051276 || chromosome organization  || LOTS IN MOUSE ||-||
    190190||GO:0006412|| GO:0007059 || chromosome segregation || NO OVERLAP ||S.p; S.c (PAT1 query); M.m||
    191 ||GO:0006412|| GO:0051186 || cofactor metabolic process  || MOUSE LOTS ||S.p. (except fusion protein)||
     191||GO:0006412|| GO:0051186 || cofactor metabolic process  || LOTS IN MOUSE ||S.p. (except fusion protein)||
    192192||GO:0006412|| GO:0000747 || conjugation with cellular fusion  || GO:0007165  ||S.p; S.c (DHH1 query) M.m||
    193193||GO:0006412|| GO:0000910 || cytokinesis || NO OVERLAP ||S.p (2 queries); S.c (1 query); M.m||
    194 ||GO:0006412|| GO:0007010 || cytoskeleton organization  || - ||-||
     194||GO:0006412|| GO:0007010 || cytoskeleton organization  ||  LOTS, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
    195195||GO:0006412|| GO:0007163 || establishment or maintenance of cell polarity  || GO:0007165 (signal transduction) ||S.p.||
    196196||GO:0006412|| GO:0006091 || generation of precursor metabolites and energy  || NO OVERLAP (pending updates, except fusion protein) ||S.p.||
    197 ||GO:0006412|| GO:0006629 || lipid metabolic process  || MOUSE LOTS, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
    198 ||GO:0006412|| GO:0016071 || mRNA metabolic process  || MOUSE LOTS ||-||
    199 ||GO:0006412|| GO:0007126 || meiosis  || GO:0007165 (signal transduction) ||S.p.||
     197||GO:0006412|| GO:0006629 || lipid metabolic process  || LOTS IN MOUSE, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
     198||GO:0006412|| GO:0016071 || mRNA metabolic process  || LOTS IN MOUSE ||-||
     199||GO:0006412|| GO:0007126 || meiosis  || LOTS IN MOUSE, mainly signal transduction) ||S.p.||
    200200||GO:0006412|| GO:0007005 || mitochondrion organization  || LOTS, mitochondrial translation ||-||
    201201||GO:0006412|| GO:0071941 || nitrogen cycle metabolic process  || NO OVERLAP ||S.p; S.c; M.m||
     
    203203||GO:0006412|| GO:0006913 || nucleocytoplasmic transport  || LOTS ||-||
    204204||GO:0006412|| GO:0007031 || peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
    205 
    206205||GO:0006412|| GO:0030163 || protein catabolic process  || MOUSE LOTS ||S.p; S.c||
    207206||GO:0006412|| GO:0006461 || protein complex assembly  || MOUSE LOTS ||-||
    208 ||GO:0006412|| GO:0006457 || protein folding  || - ||-||
    209 
    210 ||GO:0006412|| GO:0006486 || protein glycosylation  || NO OVERLAP ||S.p; S.c; M.m (ontology parentage of glycosylation pending) ||
    211 ||GO:0006412|| GO:0051604 || protein maturation  || - ||-||
    212 ||GO:0006412|| GO:0070647 || protein modification by small protein conjugation or removal  || - ||-||
     207||GO:0006412|| GO:0006457 || protein folding  || LOTS ||-||
     208||GO:0006412|| GO:0006486 || protein glycosylation  || NO OVERLAP ||S.p; S.c; M.m (ontology parentage of glycosylation pending) |
     209||GO:0006412|| GO:0051604 || protein maturation  || LOTS ||-||
     210||GO:0006412|| GO:0070647 || protein modification by small protein conjugation or removal  || LOTS ||-||
    213211||GO:0006412|| GO:0006605 || protein targeting  || NO OVERLAP ||S.p. pending fixes||
    214 ||GO:0006412|| GO:0007346 || regulation of mitotic cell cycle  || - ||-||
     212||GO:0006412|| GO:0007346 || regulation of mitotic cell cycle  || LOTS, probably all signal trasnduction ||-||
    215213||GO:0006412|| GO:0042254 || ribosome biogenesis  || LOTS ||-||
    216214||GO:0006412|| GO:0023052 || signaling  || LOTS ||-||
     
    227225
    228226|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    229 || GO:0042254|| GO:0006310 || DNA recombination || ???  ||S.p.; S.c;  ||
    230 || GO:0042254|| GO:0006281 || DNA repair || NO OVERLAP ||S.p.||
    231 || GO:0042254|| GO:0006260 || DNA replication || - ||-||
    232 || GO:0042254|| GO:0030437 || ascospore formation || - ||-||
    233 || GO:0042254|| GO:0005975 || carbohydrate metabolic process || NO OVERLAP ||S.p.||
    234 || GO:0042254|| GO:0007155 || cell adhesion || NO OVERLAP ||S.p; S.c||
    235 || GO:0042254|| GO:0006520 || cellular amino acid metabolic process || NO OVERLAP ||S.p.; S.c.||
    236 || GO:0042254|| GO:0070882 || cellular cell wall organization or biogenesis || - ||-||
    237 || GO:0042254|| GO:0016568 || chromatin modification || - ||-||
    238 || GO:0042254|| GO:0051276 || chromosome organization  || - ||-||
    239 || GO:0042254|| GO:0007059 || chromosome segregation || - ||-||
    240 || GO:0042254|| GO:0051186 || cofactor metabolic process  || - ||-||
    241 || GO:0042254|| GO:0000747 || conjugation with cellular fusion  || - ||-||
    242 || GO:0042254|| GO:0000910 || cytokinesis || - ||-||
    243 || GO:0042254|| GO:0002181 || cytoplasmic translation  || - ||-||
    244 || GO:0042254|| GO:0007010 || cytoskeleton organization  || - ||-||
    245 || GO:0042254|| GO:0007163 || establishment or maintenance of cell polarity  || NO OVERLAP ||S.p.||
    246 || GO:0042254|| GO:0006091 || generation of precursor metabolites and energy  || NO OVERLAP ||S.p.||
    247 || GO:0042254|| GO:0006629 || lipid metabolic process  || GO:0019216 (regulation of lipid metabolic process) ||S.p.; S.c.||
    248 || GO:0042254|| GO:0016071 || mRNA metabolic process  || - ||-||
    249 || GO:0042254|| GO:0007126 || meiosis  || -||-||
     227|| GO:0042254|| GO:0006310 || DNA recombination || NO OVERLAP  ||S.p.; S.c; M.m (after isotype switching fix)||
     228|| GO:0042254|| GO:0006281 || DNA repair || LOTS cerevisiae ||S.p.||
     229|| GO:0042254|| GO:0006260 || DNA replication || LOTS ||-||
     230|| GO:0042254|| GO:0030437 || ascospore formation ||  GO:0023052 (signaling, upstream) ||S.p; S.c; M.m (n/a)||
     231|| GO:0042254|| GO:0005975 || carbohydrate metabolic process || GO:0023052 (signaling, upstream) ||S.p.||
     232|| GO:0042254|| GO:0007155 || cell adhesion || MOUSE LOTS ||S.p; S.c||
     233|| GO:0042254|| GO:0006520 || cellular amino acid metabolic process || NO OVERLAP ||S.p.; S.c; M.m||
     234|| GO:0042254|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p.; S.c; M.m (n/a)||
     235|| GO:0042254|| GO:0016568 || chromatin modification || LOTS ||-||
     236|| GO:0042254|| GO:0051276 || chromosome organization  || LOTS ||-||
     237|| GO:0042254|| GO:0007059 || chromosome segregation || LOTS ||-||
     238|| GO:0042254|| GO:0051186 || cofactor metabolic process  || LATER ||-||
     239|| GO:0042254|| GO:0000747 || conjugation with cellular fusion  || LATER ||-||
     240|| GO:0042254|| GO:0000910 || cytokinesis || LATER, NOP15 ||-||
     241|| GO:0042254|| GO:0002181 || cytoplasmic translation  || SEE ABOVE ||-||
     242|| GO:0042254|| GO:0007010 || cytoskeleton organization  || LOTS ||-||
     243|| GO:0042254|| GO:0007163 || establishment or maintenance of cell polarity  || LATER  ||S.p.||
     244|| GO:0042254|| GO:0006091 || generation of precursor metabolites and energy  || GO:0023052 (signaling, upstream) ||S.p.; S.c; M.m||
     245|| GO:0042254|| GO:0006629 || lipid metabolic process  || LATER GO:0019216 (regulation of lipid metabolic process) ||S.p.; S.c.||
     246|| GO:0042254|| GO:0016071 || mRNA metabolic process  || MOUSE LOTS ||-||
     247|| GO:0042254|| GO:0007126 || meiosis  || GO:0023052 (signaling, upstream)||Sp; S.c. M.m||
     248
    250249|| GO:0042254|| GO:0007005 || mitochondrion organization  || - ||-||
    251250|| GO:0042254|| GO:0071941 || nitrogen cycle metabolic process  || - ||S.c; S.c||
     
    262261|| GO:0042254|| GO:0007346 || regulation of mitotic cell cycle  || - ||-||
    263262|| GO:0042254|| GO:0023052 || signaling  || - ||-||
    264 || GO:0042254|| GO:0006399 || tRNA metabolic process  || - ||-||
     263|| GO:0042254|| GO:0006399 || tRNA metabolic process  || SEE ABOVE ||-||
    265264|| GO:0042254|| GO:0006351 || transcription, DNA-dependent  || - ||-||
    266265|| GO:0042254|| GO:0055085 || transmembrane transport  || NO OVERLAP ||S.p.||