Changes between Version 175 and Version 176 of MatrixProject


Ignore:
Timestamp:
Jan 4, 2013, 11:23:35 AM (9 years ago)
Author:
val_wood
Comment:

--

Legend:

Unmodified
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Modified
  • MatrixProject

    v175 v176  
    5252
    5353|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    54 ||GO:0006520|| GO:0006310 || DNA recombination || NO OVERLAP || S.p; M.m; S.c. ||
    55 ||GO:0006520|| GO:0006281 || DNA repair || GO:0006521 OR GO:0006338 (regulation of cellular amino acid metabolic process -NOTE transcriptional OR chromatin remodelling- NOTE, this may be indirect for repair???) ||S.p; M.m; S.c.||
    56 ||GO:0006520|| GO:0006260 || DNA replication || NO OVERLAP || S.p; M. m {one bad IP mapping reported}; S.c {3 queried} ||
    57 ||GO:0006520|| GO:0030437 || ascospore formation || NO OVERLAP || S.p; M.m {n/a}; S.c. ||
    58 ||GO:0006520|| GO:0005975 || carbohydrate metabolic process || LATER ||S.p ||
    59 ||GO:0006520|| GO:0007155 || cell adhesion || GO:0006521 (regulation of cellular amino acid metabolic process) || S.p; M.m {0 pending responses from 2 Uniprot annotations}; S.c. ||
    60 ||GO:0006520|| GO:0070882 || cellular cell wall organization or biogenesis ||GO:0004360 OR GO:0004067 (glutamine-fructose-6-phosphate transaminase isomerizing activity OR asparaginase activity) || S.p; M.m {n/a}; S.c. ||
    61 ||GO:0006520|| GO:0016568 || chromatin modification || GO:0006521 OR GO:0006355  (regulation of cellular amino acid metabolic process- transcriptional OR regulation of transcription, DNA dependent)||S.p; M.m.; S.c ||
    62 ||GO:0006520|| GO:0051276 || chromosome organization  ||  GO:0023052 OR GO:0006521 (signaling, upstream OR regulation of cellular amino acid metabolic process- transcriptional) || S.p; M.m.; S.c. ||
    63 ||GO:0006520|| GO:0007059 || chromosome segregation || GO:0023052 (signaling, upstream) || S.p; M m.; S.c. ||
    64 ||GO:0006520|| GO:0051186 || cofactor metabolic process  || LATER ||S.p ||
    65 ||GO:0006520|| GO:0000747 || conjugation with cellular fusion  || NO OVERLAP ||S.p; M.m {n/a}; S.c. ||
    66 ||GO:0006520|| GO:0000910 || cytokinesis || NO OVERLAP ||S.p; M.m {pending apc update uniprot}; S.c. ||
    67 ||GO:0006520|| GO:0002181 || cytoplasmic translation || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c {NOTE check translation too****} ||
    68 ||GO:0006520|| GO:0007010 || cytoskeleton organization  || GO:0023052 (signaling upstream) ||S.p; M.m; S.c.   ||
    69 ||GO:0006520|| GO:0007163 || establishment or maintenance of cell polarity  || GO:0006355 (regulation of transcription DNA dependent) ||S.p; M.m.; S.c. ||
    70 ||GO:0006520|| GO:0006091 || generation of precursor metabolites and energy  || LATER||S.p ||
    71 ||GO:0006520|| GO:0006629 || lipid metabolic process  || GO:0006521 OR  GO:0023052 (regulation of cellular amino acid metabolic process OR signaling-upstream) ||S.p; M.m.; S.c  ||
    72 ||GO:0006520|| GO:0016071 || mRNA metabolic process  || NO OVERLAP ||S.p; M.m {0 pending UniProt feedback}; S.c. ||
    73 ||GO:0006520|| GO:0007126 || meiosis  || NO OVERLAP ||S.p; M.m; S.c.||
    74 ||GO:0006520|| GO:0007005 || mitochondrion organization  || GO:0043039 OR GO:0003994 (tRNA aminoacylation OR aconitate hydratase) || S.p {fusion proteins need column 17 annotations} {bifunctional enzyme ilv5- need to identify specific GO term to allow this}||
    75 ||GO:0006520|| GO:0071941 || nitrogen cycle metabolic process  || LATER ||S.p ||
    76 ||GO:0006520|| GO:0055086 || nucleobase-containing small molecule metabolic process  || LATER ||S.p ||
    77 ||GO:0006520|| GO:0006913 || nucleocytoplasmic transport  || NO OVERLAP ||S.p; M.m {1 but should disappear pending response from Uniprot}||
    78 ||GO:0006520|| GO:0007031 || peroxisome organization  || NO OVERLAP ||S.p; M.m; S.c. ||
    79 
    80 
    81 ||GO:0006520|| GO:0030163 || protein catabolic process  || GO:0006521 (regulation of amino acid metabolic process) ||S.p; S.c||
    82 ||GO:0006520|| GO:0006461 || protein complex assembly  || NO OVERLAP ||S.p;  (check Mouse); S.c ||
    83 ||GO:0006520|| GO:0006457 || protein folding  || LATER ||S.p; M.m {reported 1 anomaly to MGI}; S.c {queried 2 anomalies} ||
     54||GO:0006520||GO:0006310|| DNA recombination || NO OVERLAP || S.p; M.m; S.c. ||
     55||GO:0006520||GO:0006281|| DNA repair || GO:0006521 OR GO:0006338 (regulation of cellular amino acid metabolic process -NOTE transcriptional OR chromatin remodelling- NOTE, this may be indirect for repair???) ||S.p; M.m; S.c.||
     56||GO:0006520||GO:0006260|| DNA replication || NO OVERLAP || S.p; M. m {one bad IP mapping reported}; S.c {3 queried} ||
     57||GO:0006520||GO:0030437|| ascospore formation || NO OVERLAP || S.p; M.m {n/a}; S.c. ||
     58||GO:0006520||GO:0005975|| carbohydrate metabolic process || LATER ||S.p ||
     59||GO:0006520||GO:0007155|| cell adhesion || GO:0006521 (regulation of cellular amino acid metabolic process) || S.p; M.m {0 pending responses from 2 Uniprot annotations}; S.c. ||
     60||GO:0006520||GO:0070882|| cellular cell wall organization or biogenesis ||GO:0004360 OR GO:0004067 (glutamine-fructose-6-phosphate transaminase isomerizing activity OR asparaginase activity) || S.p; M.m {n/a}; S.c. ||
     61||GO:0006520||GO:0016568|| chromatin modification || GO:0006521 OR GO:0006355  (regulation of cellular amino acid metabolic process- transcriptional OR regulation of transcription, DNA dependent)||S.p; M.m.; S.c ||
     62||GO:0006520||GO:0051276|| chromosome organization  ||  GO:0023052 OR GO:0006521 (signaling, upstream OR regulation of cellular amino acid metabolic process- transcriptional) || S.p; M.m.; S.c. ||
     63||GO:0006520||GO:0007059|| chromosome segregation || GO:0023052 (signaling, upstream) || S.p; M m.; S.c. ||
     64||GO:0006520||GO:0051186|| cofactor metabolic process  || LATER ||S.p ||
     65||GO:0006520||GO:0000747|| conjugation with cellular fusion  || NO OVERLAP ||S.p; M.m {n/a}; S.c. ||
     66||GO:0006520||GO:0000910|| cytokinesis || NO OVERLAP ||S.p; M.m {pending apc update uniprot}; S.c. ||
     67||GO:0006520||GO:0002181|| cytoplasmic translation || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c {NOTE check translation too****} ||
     68||GO:0006520||GO:0007010|| cytoskeleton organization  || GO:0023052 (signaling upstream) ||S.p; M.m; S.c.   ||
     69||GO:0006520||GO:0007163|| establishment or maintenance of cell polarity  || GO:0006355 (regulation of transcription DNA dependent) ||S.p; M.m.; S.c. ||
     70||GO:0006520||GO:0006091|| generation of precursor metabolites and energy  || LATER||S.p ||
     71||GO:0006520||GO:0006629|| lipid metabolic process  || GO:0006521 OR  GO:0023052 (regulation of cellular amino acid metabolic process OR signaling-upstream) ||S.p; M.m.; S.c  ||
     72||GO:0006520||GO:0016071|| mRNA metabolic process  || NO OVERLAP ||S.p; M.m {0 pending UniProt feedback}; S.c. ||
     73||GO:0006520||GO:0007126|| meiosis  || NO OVERLAP ||S.p; M.m; S.c.||
     74||GO:0006520||GO:0007005|| mitochondrion organization  || GO:0043039 OR GO:0003994 (tRNA aminoacylation OR aconitate hydratase) || S.p {fusion proteins need column 17 annotations} {bifunctional enzyme ilv5- need to identify specific GO term to allow this}||
     75||GO:0006520||GO:0071941|| nitrogen cycle metabolic process  || LATER ||S.p ||
     76||GO:0006520||GO:0055086|| nucleobase-containing small molecule metabolic process  || LATER ||S.p ||
     77||GO:0006520||GO:0006913|| nucleocytoplasmic transport  || NO OVERLAP ||S.p; M.m {1 but should disappear pending response from Uniprot}||
     78||GO:0006520||GO:0007031|| peroxisome organization  || NO OVERLAP ||S.p; M.m; S.c. ||
     79
     80
     81||GO:0006520||GO:0030163|| protein catabolic process  || GO:0006521 (regulation of amino acid metabolic process) ||S.p; S.c||
     82||GO:0006520||GO:0006461|| protein complex assembly  || NO OVERLAP ||S.p;  (check Mouse); S.c ||
     83||GO:0006520||GO:0006457|| protein folding  || LATER ||S.p; M.m {reported 1 anomaly to MGI}; S.c {queried 2 anomalies} ||
    8484
    8585