Changes between Version 179 and Version 180 of MatrixProject


Ignore:
Timestamp:
Jan 4, 2013, 12:27:09 PM (9 years ago)
Author:
val_wood
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • MatrixProject

    v179 v180  
    8888||GO:0006520||GO:0023052|| signaling  || LATER ||S.p; M.m; S.c ||
    8989||GO:0006520||GO:0006399|| tRNA metabolic process  || GO:0043039 OR GO:0031071 (tRNA aminoacylation OR cysteine desulphurase)  ||S.p; M.m. S.c {some checks outstanding} ||
    90 ||GO:0006520||GO:0006351|| transcription, DNA-dependent  || GO:0006355 (regulation of transcription DNA dependent) ||S.p; M.m ||
     90||GO:0006520||GO:0006351|| transcription DNA-dependent  || GO:0006355 (regulation of transcription DNA dependent) ||S.p; M.m ||
    9191||GO:0006520||GO:0055085|| transmembrane transport  || MOUSE LOTS ||S.p; S.c {one ontology query} ||
    9292||GO:0006520||GO:0007033|| vacuole organization  ||  GO:0060627 (regulation of amino acid metabolism) ||S.p; S.c; M.m ||
     
    159159||GO:0006399||GO:0042254|| ribosome biogenesis  || LOTS (add details later) ||S.p.; M.m.||
    160160||GO:0006399||GO:0023052|| signaling  ||  NO OVERLAP ||S.p; M.m. ||
    161 ||GO:0006399||GO:0006351|| transcription, DNA-dependent  ||  LATER ||S.p.; M.m||
     161||GO:0006399||GO:0006351|| transcription DNA-dependent  ||  LATER ||S.p.; M.m||
    162162||GO:0006399||GO:0055085|| transmembrane transport  || NO OVERLAP ||S.p.; M.m||
    163163||GO:0006399||GO:0007033|| vacuole organization  || NO OVERLAP ||S.p.; M.m.||
     
    174174|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    175175
    176 ||GO:0006412|| GO:0006310 || DNA recombination || GO:0000018) regulation of translation (GO:0006417) regulation of DNA recombination  ||S.p.; M.m (2 ISO's from human to fix); S.c||
    177 ||GO:0006412|| GO:0006281 || DNA repair || NO OVERLAP ||S.p.; S.c (4 KW mapping queries and 2 annotation queries); M.m 6 mappings ans 1 annotations to query||
    178 ||GO:0006412|| GO:0006260 || DNA replication || LOTS IN MOUSE ||S.p. ||
    179 ||GO:0006412|| GO:0030437 || ascospore formation || NO OVERLAP ||S.p; S.c; M.m (n/a)||
    180 ||GO:0006412|| GO:0005975 || carbohydrate metabolic process || LOTS ||-||
    181 ||GO:0006412|| GO:0007155 || cell adhesion || LOTS IN MOUSE ||S.p.||
    182 ||GO:0006412|| GO:0006520 || cellular amino acid metabolic process || SEE ABOVE ||-||
    183 ||GO:0006412|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p; S.c; M.m||
    184 ||GO:0006412|| GO:0016568 || chromatin modification || LOTS ||-||
    185 ||GO:0006412|| GO:0051276 || chromosome organization  || LOTS IN MOUSE ||-||
    186 ||GO:0006412|| GO:0007059 || chromosome segregation || NO OVERLAP ||S.p; S.c (PAT1 query); M.m||
    187 ||GO:0006412|| GO:0051186 || cofactor metabolic process  || LOTS IN MOUSE ||S.p. (except fusion protein)||
    188 ||GO:0006412|| GO:0000747 || conjugation with cellular fusion  || GO:0007165  ||S.p; S.c (DHH1 query) M.m||
    189 ||GO:0006412|| GO:0000910 || cytokinesis || NO OVERLAP ||S.p (2 queries); S.c (1 query); M.m||
    190 ||GO:0006412|| GO:0007010 || cytoskeleton organization  ||  LOTS, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
    191 ||GO:0006412|| GO:0007163 || establishment or maintenance of cell polarity  || GO:0007165 (signal transduction) ||S.p.||
    192 ||GO:0006412|| GO:0006091 || generation of precursor metabolites and energy  || NO OVERLAP (pending updates, except fusion protein) ||S.p.||
    193 ||GO:0006412|| GO:0006629 || lipid metabolic process  || LOTS IN MOUSE, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
    194 ||GO:0006412|| GO:0016071 || mRNA metabolic process  || LOTS IN MOUSE ||-||
    195 ||GO:0006412|| GO:0007126 || meiosis  || LOTS IN MOUSE, mainly signal transduction) ||S.p.||
    196 ||GO:0006412|| GO:0007005 || mitochondrion organization  || LOTS, mitochondrial translation ||-||
    197 ||GO:0006412|| GO:0071941 || nitrogen cycle metabolic process  || NO OVERLAP ||S.p; S.c; M.m||
    198 ||GO:0006412|| GO:0055086 || nucleobase-containing small molecule metabolic process  || MOUSE LOTS ||-||
    199 ||GO:0006412|| GO:0006913 || nucleocytoplasmic transport  || LOTS ||-||
    200 ||GO:0006412|| GO:0007031 || peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
    201 ||GO:0006412|| GO:0030163 || protein catabolic process  || MOUSE LOTS ||S.p; S.c||
    202 ||GO:0006412|| GO:0006461 || protein complex assembly  || MOUSE LOTS ||-||
    203 ||GO:0006412|| GO:0006457 || protein folding  || LOTS ||-||
    204 ||GO:0006412|| GO:0006486 || protein glycosylation  || NO OVERLAP ||S.p; S.c; M.m (ontology parentage of glycosylation pending) |
    205 ||GO:0006412|| GO:0051604 || protein maturation  || LOTS ||-||
    206 ||GO:0006412|| GO:0070647 || protein modification by small protein conjugation or removal  || LOTS ||-||
    207 ||GO:0006412|| GO:0006605 || protein targeting  || NO OVERLAP ||S.p. pending fixes||
    208 ||GO:0006412|| GO:0007346 || regulation of mitotic cell cycle  || LOTS, probably all signal transduction ||-||
    209 ||GO:0006412|| GO:0042254 || ribosome biogenesis  || LOTS ||-||
    210 ||GO:0006412|| GO:0023052 || signaling  || LOTS ||-||
    211 ||GO:0006412|| GO:0006399 || tRNA metabolic process  || LOTS ||-||
    212 ||GO:0006412|| GO:0006351 || transcription, DNA-dependent  || LOTS ||-||
    213 ||GO:0006412|| GO:0055085 || transmembrane transport  || MOUSE LOTS CHECK AFTER ONTOLOGY UPDATE ||S.p. (pending updates)||
    214 ||GO:0006412|| GO:0007033 || vacuole organization  || NO OVERLAP ||S.p; S.c; M.m||
    215 ||GO:0006412|| GO:0016192 || vesicle-mediated transport  || MOUSE LOTS || S.p. ||
    216 ||GO:0006412|| GO:0006766 || vitamin metabolic process  || NO OVERLAP ||S.p.; S.c; M.m ||
     176||GO:0006412||GO:0006310|| DNA recombination || GO:0000018 OR GO:0006417   (regulation of translation OR regulation of DNA recombination)  ||S.p.; M.m {2 ISO's from human to fix}; S.c||
     177||GO:0006412||GO:0006281|| DNA repair || NO OVERLAP ||S.p.; S.c {4 KW mapping queries and 2 annotation queries}; M.m {6 mappings ans 1 annotations to query}||
     178||GO:0006412||GO:0006260|| DNA replication || LOTS IN MOUSE ||S.p. ||
     179||GO:0006412||GO:0030437|| ascospore formation || NO OVERLAP ||S.p; S.c; M.m {n/a}||
     180||GO:0006412||GO:0005975|| carbohydrate metabolic process || LOTS ||-||
     181||GO:0006412||GO:0007155|| cell adhesion || LOTS IN MOUSE ||S.p.||
     182||GO:0006412||GO:0006520|| cellular amino acid metabolic process || SEE ABOVE ||-||
     183||GO:0006412||GO:0070882|| cellular cell wall organization or biogenesis || NO OVERLAP ||S.p; S.c; M.m||
     184||GO:0006412||GO:0016568|| chromatin modification || LOTS ||-||
     185||GO:0006412||GO:0051276|| chromosome organization  || LOTS IN MOUSE ||-||
     186||GO:0006412||GO:0007059|| chromosome segregation || NO OVERLAP ||S.p; S.c {PAT1 query}; M.m||
     187||GO:0006412||GO:0051186|| cofactor metabolic process  || LOTS IN MOUSE ||S.p. {except fusion protein}||
     188||GO:0006412||GO:0000747|| conjugation with cellular fusion  || GO:0007165  ||S.p; S.c {DHH1 query} M.m||
     189||GO:0006412||GO:0000910|| cytokinesis || NO OVERLAP ||S.p {2 queries}; S.c {1 query}; M.m||
     190||GO:0006412||GO:0007010|| cytoskeleton organization  ||  LOTS, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
     191||GO:0006412||GO:0007163|| establishment or maintenance of cell polarity  || GO:0007165 (signal transduction) ||S.p.; M.m||
     192||GO:0006412||GO:0006091|| generation of precursor metabolites and energy  ||  GO:0007165 (signal transduction) ||S.p. {pending updates, except fusion protein} ||
     193||GO:0006412||GO:0006629|| lipid metabolic process  || LOTS IN MOUSE, POSSIBLY ALL SIGNAL TRANSDUCTION ||-||
     194||GO:0006412||GO:0016071|| mRNA metabolic process  || LOTS IN MOUSE ||-||
     195||GO:0006412||GO:0007126|| meiosis  || LOTS IN MOUSE (mainly signal transduction) ||S.p.||
     196||GO:0006412||GO:0007005|| mitochondrion organization  || LOTS, mitochondrial translation ||-||
     197||GO:0006412||GO:0071941|| nitrogen cycle metabolic process  || NO OVERLAP ||S.p; S.c; M.m||
     198||GO:0006412||GO:0055086|| nucleobase-containing small molecule metabolic process  || MOUSE LOTS ||-||
     199||GO:0006412||GO:0006913|| nucleocytoplasmic transport  || LOTS ||-||
     200||GO:0006412||GO:0007031|| peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
     201||GO:0006412||GO:0030163|| protein catabolic process  || MOUSE LOTS ||S.p; S.c||
     202||GO:0006412||GO:0006461|| protein complex assembly  || MOUSE LOTS ||-||
     203||GO:0006412||GO:0006457|| protein folding  || LOTS ||-||
     204||GO:0006412||GO:0006486|| protein glycosylation  || NO OVERLAP ||S.p; S.c; M.m {ontology parentage of glycosylation pending} |
     205
     206
     207||GO:0006412||GO:0051604|| protein maturation  || LOTS ||-||
     208||GO:0006412||GO:0070647|| protein modification by small protein conjugation or removal  || LOTS ||-||
     209||GO:0006412||GO:0006605|| protein targeting  || NO OVERLAP ||S.p. pending fixes||
     210||GO:0006412||GO:0007346|| regulation of mitotic cell cycle  || LOTS, probably all signal transduction ||-||
     211||GO:0006412||GO:0042254|| ribosome biogenesis  || LOTS ||-||
     212||GO:0006412||GO:0023052|| signaling  || LOTS ||-||
     213||GO:0006412||GO:0006399|| tRNA metabolic process  || LOTS ||-||
     214||GO:0006412||GO:0006351|| transcription DNA-dependent  || LOTS ||-||
     215||GO:0006412||GO:0055085|| transmembrane transport  || MOUSE LOTS CHECK AFTER ONTOLOGY UPDATE ||S.p. (pending updates)||
     216||GO:0006412||GO:0007033|| vacuole organization  || NO OVERLAP ||S.p; S.c; M.m||
     217||GO:0006412||GO:0016192|| vesicle-mediated transport  || MOUSE LOTS || S.p. ||
     218||GO:0006412||GO:0006766|| vitamin metabolic process  || NO OVERLAP ||S.p.; S.c; M.m ||
    217219
    218220
     
    221223
    222224|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    223 ||GO:0042254|| GO:0006310 || DNA recombination || NO OVERLAP  ||S.p.; S.c; M.m (after isotype switching fix)||
    224 ||GO:0042254|| GO:0006281 || DNA repair || LOTS cerevisiae ||S.p.||
    225 ||GO:0042254|| GO:0006260 || DNA replication || LOTS ||-||
    226 ||GO:0042254|| GO:0030437 || ascospore formation ||  GO:0023052 (signaling, upstream) ||S.p; S.c; M.m (n/a)||
    227 ||GO:0042254|| GO:0005975 || carbohydrate metabolic process || GO:0023052 (signaling, upstream) ||S.p.||
    228 ||GO:0042254|| GO:0007155 || cell adhesion || MOUSE LOTS ||S.p; S.c||
    229 ||GO:0042254|| GO:0006520 || cellular amino acid metabolic process || NO OVERLAP ||S.p.; S.c; M.m||
    230 ||GO:0042254|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p.; S.c; M.m (n/a)||
    231 ||GO:0042254|| GO:0016568 || chromatin modification || LOTS ||-||
    232 ||GO:0042254|| GO:0051276 || chromosome organization  || LOTS ||-||
    233 ||GO:0042254|| GO:0007059 || chromosome segregation || LOTS ||-||
    234 ||GO:0042254|| GO:0051186 || cofactor metabolic process  || LATER ||-||
    235 ||GO:0042254|| GO:0000747 || conjugation with cellular fusion  || LATER ||-||
    236 ||GO:0042254|| GO:0000910 || cytokinesis || LATER, NOP15 ||-||
    237 ||GO:0042254|| GO:0002181 || cytoplasmic translation  || SEE ABOVE ||-||
    238 ||GO:0042254|| GO:0007010 || cytoskeleton organization  || LOTS ||-||
    239 ||GO:0042254|| GO:0007163 || establishment or maintenance of cell polarity  || LATER  ||S.p.||
    240 ||GO:0042254|| GO:0006091 || generation of precursor metabolites and energy  || GO:0023052 (signaling, upstream) ||S.p.; S.c; M.m||
    241 ||GO:0042254|| GO:0006629 || lipid metabolic process  || LATER GO:0019216 (regulation of lipid metabolic process) ||S.p.; S.c.||
    242 ||GO:0042254|| GO:0016071 || mRNA metabolic process  || MOUSE LOTS ||-||
    243 ||GO:0042254|| GO:0007126 || meiosis  || GO:0023052 (signaling, upstream)||Sp; S.c. M.m||
    244 ||GO:0042254|| GO:0007005 || mitochondrion organization  || LOTS ||-||
    245 ||GO:0042254|| GO:0071941 || nitrogen cycle metabolic process  || NO OVERLAP ||M.m; S.p; S.c||
    246 ||GO:0042254|| GO:0055086 || nucleobase-containing small molecule metabolic process  || LOTS ||-||
    247 ||GO:0042254|| GO:0006913 || nucleocytoplasmic transport  || LOTS ||-||
    248 ||GO:0042254|| GO:0007031 || peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
    249 ||GO:0042254|| GO:0030163 || protein catabolic process  || LATER ||S.p.||
    250 ||GO:0042254|| GO:0006461 || protein complex assembly  || MOUSE LOTS ||-||
    251 ||GO:0042254|| GO:0006457 || protein folding  || LATER S. c overlaps ||S.p.||
    252 ||GO:0042254|| GO:0006486 || protein glycosylation  || NO OVERLAP ||S.p.; S.c; M.m||
    253 ||GO:0042254|| GO:0051604 || protein maturation  || NO OVERLAP || S.p; S.c; M.m||
    254 ||GO:0042254|| GO:0070647 || protein modification by small protein conjugation or removal  || LATER ||-||
    255 ||GO:0042254|| GO:0006605 || protein targeting  || LATER||-||
    256 ||GO:0042254|| GO:0007346 || regulation of mitotic cell cycle  || LATER ||-||
    257 ||GO:0042254|| GO:0023052 || signaling  || LATER ||-||
    258 ||GO:0042254|| GO:0006399 || tRNA metabolic process  || SEE ABOVE ||-||
    259 ||GO:0042254|| GO:0006351 || transcription, DNA-dependent  || LOTS ||-||
    260 ||GO:0042254|| GO:0055085 || transmembrane transport  || NO OVERLAP ||S.p.; S.c; M.m||
    261 ||GO:0042254|| GO:0007033 || vacuole organization  || NO OVERLAP ||S.p.;  S.c; M.m.||
    262 ||GO:0042254|| GO:0016192 || vesicle-mediated transport  || LATER ||S.p.||
    263 ||GO:0042254|| GO:0006766 || vitamin metabolic process  ||  NO OVERLAP ||S.p.; S.c; M.m||
     225||GO:0042254||GO:0006310|| DNA recombination || NO OVERLAP  ||S.p.; S.c; M.m {after isotype switching fix, actually this might be OK....}||
     226||GO:0042254||GO:0006281|| DNA repair || LOTS cerevisiae ||S.p.||
     227||GO:0042254||GO:0006260|| DNA replication || LOTS ||-||
     228||GO:0042254||GO:0030437|| ascospore formation ||  GO:0023052 (signaling, upstream) ||S.p; S.c; M.m {n/a}||
     229||GO:0042254||GO:0005975|| carbohydrate metabolic process || GO:0023052 (signaling, upstream) ||S.p.||
     230||GO:0042254||GO:0007155|| cell adhesion || MOUSE LOTS ||S.p; S.c||
     231||GO:0042254||GO:0006520|| cellular amino acid metabolic process || NO OVERLAP ||S.p.; S.c; M.m||
     232||GO:0042254||GO:0070882|| cellular cell wall organization or biogenesis || NO OVERLAP ||S.p.; S.c; M.m {n/a}||
     233||GO:0042254||GO:0016568|| chromatin modification || LOTS ||-||
     234||GO:0042254||GO:0051276|| chromosome organization  || LOTS ||-||
     235||GO:0042254||GO:0007059|| chromosome segregation || LOTS ||-||
     236||GO:0042254||GO:0051186|| cofactor metabolic process  || LATER ||-||
     237||GO:0042254||GO:0000747|| conjugation with cellular fusion  || LATER ||-||
     238||GO:0042254||GO:0000910|| cytokinesis || LATER, NOP15 ||-||
     239||GO:0042254||GO:0002181|| cytoplasmic translation  || SEE ABOVE ||-||
     240||GO:0042254||GO:0007010|| cytoskeleton organization  || LOTS ||-||
     241||GO:0042254||GO:0007163|| establishment or maintenance of cell polarity  || LATER  ||S.p.||
     242||GO:0042254||GO:0006091|| generation of precursor metabolites and energy  || GO:0023052 (signaling, upstream) ||S.p.; S.c; M.m||
     243||GO:0042254||GO:0006629|| lipid metabolic process  || LATER GO:0019216 (regulation of lipid metabolic process) ||S.p.; S.c.||
     244||GO:0042254||GO:0016071|| mRNA metabolic process  || MOUSE LOTS ||-||
     245||GO:0042254||GO:0007126|| meiosis  || GO:0023052 (signaling, upstream)||Sp; S.c. M.m||
     246||GO:0042254||GO:0007005|| mitochondrion organization  || LOTS ||-||
     247||GO:0042254||GO:0071941|| nitrogen cycle metabolic process  || NO OVERLAP ||M.m; S.p; S.c||
     248||GO:0042254||GO:0055086|| nucleobase-containing small molecule metabolic process  || LOTS ||-||
     249||GO:0042254||GO:0006913|| nucleocytoplasmic transport  || LOTS ||-||
     250||GO:0042254||GO:0007031|| peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
     251||GO:0042254||GO:0030163|| protein catabolic process  || LATER ||S.p.||
     252||GO:0042254||GO:0006461|| protein complex assembly  || MOUSE LOTS ||-||
     253||GO:0042254||GO:0006457|| protein folding  || LATER S. c overlaps ||S.p.||
     254||GO:0042254||GO:0006486|| protein glycosylation  || NO OVERLAP ||S.p.; S.c; M.m||
     255||GO:0042254||GO:0051604|| protein maturation  || NO OVERLAP || S.p; S.c; M.m||
     256||GO:0042254||GO:0070647|| protein modification by small protein conjugation or removal  || LATER ||-||
     257||GO:0042254||GO:0006605|| protein targeting  || LATER||-||
     258||GO:0042254||GO:0007346|| regulation of mitotic cell cycle  || LATER ||-||
     259||GO:0042254||GO:0023052|| signaling  || LATER ||-||
     260||GO:0042254||GO:0006399|| tRNA metabolic process  || SEE ABOVE ||-||
     261||GO:0042254||GO:0006351|| transcription, DNA-dependent  || LOTS ||-||
     262||GO:0042254||GO:0055085|| transmembrane transport  || NO OVERLAP ||S.p.; S.c; M.m||
     263||GO:0042254||GO:0007033|| vacuole organization  || NO OVERLAP ||S.p.;  S.c; M.m.||
     264||GO:0042254||GO:0016192|| vesicle-mediated transport  || LATER ||S.p.||
     265||GO:0042254||GO:0006766|| vitamin metabolic process  ||  NO OVERLAP ||S.p.; S.c; M.m||
    264266
    265267
     
    268270|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    269271
    270 ||GO:0055085|| GO:0006310 || DNA recombination || NO OVERLAP ||S.p.; S.c; M.m||
    271 ||GO:0055085|| GO:0006281 || DNA repair || MOUSE HAS LOTS CHECK LATER ||S.p.; S.c||
    272 ||GO:0055085|| GO:0006260 || DNA replication || MOUSE HAS LOTS CHECK LATER  ||S.p.; S.c.||
    273 ||GO:0055085|| GO:0030437 || ascospore formation || S. C LATER ||S.p.; M.m(n/a)||
    274 ||GO:0055085|| GO:0005975 || carbohydrate metabolic process || LOTS ||-||
    275 ||GO:0055085|| GO:0007155 || cell adhesion || MOUSE HAS LOTS CHECK LATER ||S.p.; S.c.||
    276 ||GO:0055085|| GO:0006520 || cellular amino acid metabolic process || LOTS ||-||
    277 ||GO:0055085|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p; S.c; M.m||
    278 ||GO:0055085|| GO:0016568 || chromatin modification || 11 MOUSE BUT SHOULD STOP WHEN ONTOLOGY FIXED ||S.p.; S.c; ||
    279 ||GO:0055085|| GO:0051276 || chromosome organization  || MOUSE HAS LOTS ||-||
    280 ||GO:0055085|| GO:0007059 || chromosome segregation || 4 MOUSE BUT THESE MIGHT DISAPPEAR ||S.p.; S.c||
    281 ||GO:0055085|| GO:0051186 || cofactor metabolic process  || S.C LOTS, LATER ||S.p.||
    282 ||GO:0055085|| GO:0000747 || conjugation with cellular fusion  || LATER ||-||
    283 ||GO:0055085|| GO:0000910 || cytokinesis || GO:0023052 (signaling, upstream) ||S.p; S.c; m.m||
    284 ||GO:0055085|| GO:0002181 || cytoplasmic translation  || NO OVERLAP || S.p.; S.c; M.m||
    285 ||GO:0055085|| GO:0007010 || cytoskeleton organization  || MOUSE LOTS ||S.p.; S.c;||
    286 ||GO:0055085|| GO:0007163 || establishment or maintenance of cell polarity  || MOUSE LOTS ||S.p.||
    287 ||GO:0055085|| GO:0006091 || generation of precursor metabolites and energy  || MOUSE LOTS ||-||
    288 ||GO:0055085|| GO:0006629 || lipid metabolic process  || MOUSE LOTS ||-||
    289 ||GO:0055085|| GO:0016071 || mRNA metabolic process  || NO OVERLAP ||S.p.; S.c; M.m||
    290 ||GO:0055085|| GO:0007126 || meiosis  || LATER||S.p.||
    291 ||GO:0055085|| GO:0007005 || mitochondrion organization  || LOTS ||-||
    292 ||GO:0055085|| GO:0071941 || nitrogen cycle metabolic process  || LATER ||-||
    293 ||GO:0055085|| GO:0055086 || nucleobase-containing small molecule metabolic process  || LATER ||-||
    294 ||GO:0055085|| GO:0006913 || nucleocytoplasmic transport  || NO OVERLAP (pending ontology changes) ||-||
    295 ||GO:0055085|| GO:0007031 || peroxisome organization  || LOTS ||-||
    296 ||GO:0055085|| GO:0030163 || protein catabolic process  || LOTS || S.p ||
    297 ||GO:0055085|| GO:0006461 || protein complex assembly  || LOTS ||-||
    298 ||GO:0055085|| GO:0006457 || protein folding  || LOTS CHECK ||-||
    299 ||GO:0055085|| GO:0006486 || protein glycosylation  || LOTS ||-||
    300 ||GO:0055085|| GO:0051604 || protein maturation  || LATER ||-||
    301 ||GO:0055085|| GO:0070647 || protein modification by small protein conjugation or removal  || LATER ||-||
    302 ||GO:0055085|| GO:0006605 || protein targeting  || LOTS ||-||
    303 ||GO:0055085|| GO:0007346 || regulation of mitotic cell cycle  || LOTS ||-||
    304 ||GO:0055085|| GO:0042254 || ribosome biogenesis  || SEE ABOVE ||-||
    305 ||GO:0055085|| GO:0023052 || signaling  || LATER ||-||
    306 ||GO:0055085|| GO:0006399 || tRNA metabolic process  || SEE ABOVE ||S.p.||
    307 ||GO:0055085|| GO:0006351 || transcription, DNA-dependent  || LOTS ||-||
    308 ||GO:0055085|| GO:0007033 || vacuole organization  || LATER ||S.p.||
    309 ||GO:0055085|| GO:0016192 || vesicle-mediated transport  || LOTS ||-||
    310 ||GO:0055085|| GO:0006766 || vitamin metabolic process  || LATER ||-||
     272||GO:0055085||GO:0006310|| DNA recombination || NO OVERLAP ||S.p.; S.c; M.m||
     273||GO:0055085||GO:0006281|| DNA repair || MOUSE HAS LOTS CHECK LATER ||S.p.; S.c||
     274||GO:0055085||GO:0006260|| DNA replication || MOUSE HAS LOTS CHECK LATER  ||S.p.; S.c.||
     275||GO:0055085||GO:0030437|| ascospore formation || S. C LATER ||S.p.; M.m(n/a)||
     276||GO:0055085||GO:0005975|| carbohydrate metabolic process || LOTS ||-||
     277||GO:0055085||GO:0007155|| cell adhesion || MOUSE HAS LOTS CHECK LATER ||S.p.; S.c.||
     278||GO:0055085||GO:0006520|| cellular amino acid metabolic process || LOTS ||-||
     279||GO:0055085||GO:0070882|| cellular cell wall organization or biogenesis || NO OVERLAP ||S.p; S.c; M.m||
     280||GO:0055085||GO:0016568|| chromatin modification || NO OVERLAP ||S.p.; S.c; {11 MOUSE BUT SHOULD STOP WHEN ONTOLOGY FIXED} ||
     281||GO:0055085||GO:0051276|| chromosome organization  || MOUSE HAS LOTS ||-||
     282||GO:0055085||GO:0007059|| chromosome segregation || 4 MOUSE BUT THESE MIGHT DISAPPEAR ||S.p.; S.c||
     283||GO:0055085||GO:0051186|| cofactor metabolic process  || S.C LOTS, LATER ||S.p.||
     284||GO:0055085||GO:0000747|| conjugation with cellular fusion  || LATER ||-||
     285||GO:0055085||GO:0000910|| cytokinesis || GO:0023052 (signaling, upstream) ||S.p; S.c; m.m||
     286||GO:0055085||GO:0002181|| cytoplasmic translation  || NO OVERLAP || S.p.; S.c; M.m||
     287||GO:0055085||GO:0007010|| cytoskeleton organization  || MOUSE LOTS ||S.p.; S.c;||
     288||GO:0055085||GO:0007163|| establishment or maintenance of cell polarity  || MOUSE LOTS ||S.p.||
     289||GO:0055085||GO:0006091|| generation of precursor metabolites and energy  || MOUSE LOTS ||-||
     290||GO:0055085||GO:0006629|| lipid metabolic process  || MOUSE LOTS ||-||
     291||GO:0055085||GO:0016071|| mRNA metabolic process  || NO OVERLAP ||S.p.; S.c; M.m||
     292||GO:0055085||GO:0007126|| meiosis  || LATER||S.p.||
     293||GO:0055085||GO:0007005|| mitochondrion organization  || LOTS ||-||
     294||GO:0055085||GO:0071941|| nitrogen cycle metabolic process  || LATER ||-||
     295||GO:0055085||GO:0055086|| nucleobase-containing small molecule metabolic process  || LATER ||-||
     296||GO:0055085||GO:0006913|| nucleocytoplasmic transport  || NO OVERLAP ||S.p; M.m {pending ontology changes} ||
     297||GO:0055085||GO:0007031|| peroxisome organization  || LOTS ||-||
     298||GO:0055085||GO:0030163|| protein catabolic process  || LOTS || S.p ||
     299||GO:0055085||GO:0006461|| protein complex assembly  || LOTS ||-||
     300||GO:0055085||GO:0006457|| protein folding  || LOTS CHECK ||-||
     301||GO:0055085||GO:0006486|| protein glycosylation  || LOTS ||-||
     302||GO:0055085||GO:0051604|| protein maturation  || LATER ||-||
     303||GO:0055085||GO:0070647|| protein modification by small protein conjugation or removal  || LATER ||-||
     304||GO:0055085||GO:0006605|| protein targeting  || LOTS ||-||
     305||GO:0055085||GO:0007346|| regulation of mitotic cell cycle  || LOTS ||-||
     306||GO:0055085||GO:0042254|| ribosome biogenesis  || SEE ABOVE ||-||
     307||GO:0055085||GO:0023052|| signaling  || LATER ||-||
     308||GO:0055085||GO:0006399|| tRNA metabolic process  || SEE ABOVE ||S.p.||
     309||GO:0055085||GO:0006351|| transcription, DNA-dependent  || LOTS ||-||
     310||GO:0055085||GO:0007033|| vacuole organization  || LATER ||S.p.||
     311||GO:0055085||GO:0016192|| vesicle-mediated transport  || LOTS ||-||
     312||GO:0055085| GO:0006766|| vitamin metabolic process  || LATER ||-||
    311313
    312314
     
    315317|| term ID 1 || term ID 2|| term name 2|| exceptions (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    316318
    317 ||GO:0006766|| GO:0006310 || DNA recombination || NO OVERLAP ||S.p.; S.c; M.m (1, looks dodgy ifn2 same paper as snai2 below)||
    318 ||GO:0006766|| GO:0006281 || DNA repair || NO OVERLAP ||S.p.; S.c; M.m||
    319 ||GO:0006766|| GO:0006260 || DNA replication || NO OVERLAP ||S.p.; S.c; M.m||
    320 ||GO:0006766|| GO:0030437 || ascospore formation || NO OVERLAP ||S.p.; S.c; M.m (n/a)||
    321 ||GO:0006766|| GO:0005975 || carbohydrate metabolic process || MOUSE LOTS ||S.p.||
    322 ||GO:0006766|| GO:0007155 || cell adhesion || LATER ||S.p.; S.c||
    323 ||GO:0006766|| GO:0006520 || cellular amino acid metabolic process || LATER||-||
    324 ||GO:0006766|| GO:0070882 || cellular cell wall organization or biogenesis || NO OVERLAP ||S.p.; S.c; M.m||
    325 ||GO:0006766|| GO:0016568 || chromatin modification || NO OVERLAP ||S.p.; M.m (1, looks dodgy, Snai2)||
    326 ||GO:0006766|| GO:0051276 || chromosome organization  || NO OVERLAP ||S.p.; S.c; M.m (1, looks dodgy, Snai2)||
    327 ||GO:0006766|| GO:0007059 || chromosome segregation || NO OVERLAP ||S.p.; S.c; M.m||
    328 ||GO:0006766|| GO:0051186 || cofactor metabolic process  || LOTS ||-||
    329 ||GO:0006766|| GO:0000747 || conjugation with cellular fusion  ||NO OVERLAP ||S.p.; S.c; M.m (n/a)||
    330 ||GO:0006766|| GO:0000910 || cytokinesis || NO OVERLAP ||S.p.; M.m; S.c||
    331 ||GO:0006766|| GO:0002181 || cytoplasmic translation  || NO OVERLAP ||S.p.; S.c.; M.m||
    332 ||GO:0006766|| GO:0007010 || cytoskeleton organization  || NO OVERLAP ||S.p.; S.c; M.m||
    333 ||GO:0006766|| GO:0007163 || establishment or maintenance of cell polarity  || NO OVERLAP ||S.p.; M.m; S.c||
    334 ||GO:0006766|| GO:0006091 || generation of precursor metabolites and energy  || NO OVERLAP ||S.p.; M.m; S.c||
    335 ||GO:0006766|| GO:0006629 || lipid metabolic process  || MOUSE LOTS ||S.p.||
    336 ||GO:0006766|| GO:0016071 || mRNA metabolic process  || NO OVERLAP ||S.p.; S.c; M.m||
    337 ||GO:0006766|| GO:0007126 || meiosis  || LATER  ||S.p.; S.c||
    338 ||GO:0006766|| GO:0007005 || mitochondrion organization  || NO OVERLAP ||S.p.; M.m||
    339 ||GO:0006766|| GO:0071941 || nitrogen cycle metabolic process  || NO OVERLAP || M.m.; S.c; S.p||
    340 ||GO:0006766|| GO:0055086 || nucleobase-containing small molecule metabolic process  || LATER ||-||
    341 ||GO:0006766|| GO:0006913 || nucleocytoplasmic transport  || NO OVERLAP ||S.p.; S.c; M.m (4 but snai2 and Ifng look dodgy)||
    342 ||GO:0006766|| GO:0007031 || peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
    343 ||GO:0006766|| GO:0030163 || protein catabolic process  || NO OVERLAP ||S.p.; S.c; M.m (3 but look dodgy)||
    344 ||GO:0006766|| GO:0006461 || protein complex assembly  || NO OVERLAP ||S.p.; S.c; M.m (2 look dodgy)||
    345 ||GO:0006766|| GO:0006457 || protein folding  || NO OVERLAP ||S.p.; S.c; M.m||
    346 ||GO:0006766|| GO:0006486 || protein glycosylation  || NO OVERLAP ||S.p.; S.c; M.m||
    347 ||GO:0006766|| GO:0051604 || protein maturation  || NO OVERLAP ||S.p.; S.c; M.m||
    348 ||GO:0006766|| GO:0070647 || protein modification by small protein conjugation or removal  || NO OVERLAP ||S.p.; S.c; M.m (1 but looks wrong for UB med conjugation)||
    349 ||GO:0006766|| GO:0006605 || protein targeting  || NO OVERLAP ||S.p.; S.c; M.m (5 but look dodgy)||
    350 ||GO:0006766|| GO:0007346 || regulation of mitotic cell cycle  || NO OVERLAP ||S.p.; S.c; M.m (except tnf, check)||
    351 ||GO:0006766|| GO:0042254 || ribosome biogenesis  || NO OVERLAP ||S.p.; S.c; M.m||
    352 ||GO:0006766|| GO:0023052 || signaling  || MOUSE LOTS ||S.p.; S.c||
    353 ||GO:0006766|| GO:0006399 || tRNA metabolic process  || SEE ABOVE ||-||
    354 ||GO:0006766|| GO:0006351 || transcription, DNA-dependent  ||MOUSE LOTS ||S.p.||
    355 ||GO:0006766|| GO:0055085 || transmembrane transport  || MOUSE LOTS ||S.p.||
    356 ||GO:0006766|| GO:0007033 || vacuole organization  || NO OVERLAP ||S.p.; S.c; M.m||
    357 ||GO:0006766|| GO:0016192 || vesicle-mediated transport  || NO OVERLAP ||S.p.; S.c; M.m||
     319||GO:0006766||GO:0006310|| DNA recombination || NO OVERLAP ||S.p.; S.c; M.m {1, looks dodgy ifn2 same paper as snai2 below}||
     320||GO:0006766||GO:0006281|| DNA repair || NO OVERLAP ||S.p.; S.c; M.m||
     321||GO:0006766||GO:0006260|| DNA replication || NO OVERLAP ||S.p.; S.c; M.m||
     322||GO:0006766||GO:0030437|| ascospore formation || NO OVERLAP ||S.p.; S.c; M.m (n/a)||
     323||GO:0006766||GO:0005975|| carbohydrate metabolic process || MOUSE LOTS ||S.p.||
     324||GO:0006766||GO:0007155|| cell adhesion || LATER ||S.p.; S.c||
     325||GO:0006766||GO:0006520|| cellular amino acid metabolic process || LATER||-||
     326||GO:0006766||GO:0070882|| cellular cell wall organization or biogenesis || NO OVERLAP ||S.p.; S.c; M.m||
     327||GO:0006766||GO:0016568|| chromatin modification || NO OVERLAP ||S.p.; M.m {1, looks dodgy, Snai2}||
     328||GO:0006766||GO:0051276|| chromosome organization  || NO OVERLAP ||S.p.; S.c; M.m {1, looks dodgy, Snai2}||
     329||GO:0006766||GO:0007059|| chromosome segregation || NO OVERLAP ||S.p.; S.c; M.m||
     330||GO:0006766||GO:0051186|| cofactor metabolic process  || LOTS ||-||
     331||GO:0006766||GO:0000747|| conjugation with cellular fusion  ||NO OVERLAP ||S.p.; S.c; M.m {n/a}||
     332||GO:0006766||GO:0000910|| cytokinesis || NO OVERLAP ||S.p.; M.m; S.c||
     333||GO:0006766||GO:0002181|| cytoplasmic translation  || NO OVERLAP ||S.p.; S.c.; M.m||
     334||GO:0006766||GO:0007010|| cytoskeleton organization  || NO OVERLAP ||S.p.; S.c; M.m||
     335||GO:0006766||GO:0007163|| establishment or maintenance of cell polarity  || NO OVERLAP ||S.p.; M.m; S.c||
     336||GO:0006766||GO:0006091|| generation of precursor metabolites and energy  || NO OVERLAP ||S.p.; M.m; S.c||
     337||GO:0006766||GO:0006629|| lipid metabolic process  || MOUSE LOTS ||S.p.||
     338||GO:0006766||GO:0016071|| mRNA metabolic process  || NO OVERLAP ||S.p.; S.c; M.m||
     339||GO:0006766||GO:0007126|| meiosis  || LATER  ||S.p.; S.c||
     340||GO:0006766||GO:0007005|| mitochondrion organization  || NO OVERLAP ||S.p.; M.m||
     341||GO:0006766||GO:0071941|| nitrogen cycle metabolic process  || NO OVERLAP || M.m.; S.c; S.p||
     342||GO:0006766||GO:0055086|| nucleobase-containing small molecule metabolic process  || LATER ||-||
     343||GO:0006766||GO:0006913|| nucleocytoplasmic transport  || NO OVERLAP ||S.p.; S.c; M.m {4 but snai2 and Ifng look dodgy}||
     344||GO:0006766||GO:0007031|| peroxisome organization  || NO OVERLAP ||S.p.; S.c; M.m||
     345||GO:0006766||GO:0030163|| protein catabolic process  || NO OVERLAP ||S.p.; S.c; M.m {3 but look dodgy}||
     346||GO:0006766||GO:0006461|| protein complex assembly  || NO OVERLAP ||S.p.; S.c; M.m {2 look dodgy}||
     347||GO:0006766||GO:0006457|| protein folding  || NO OVERLAP ||S.p.; S.c; M.m||
     348||GO:0006766||GO:0006486|| protein glycosylation  || NO OVERLAP ||S.p.; S.c; M.m||
     349||GO:0006766||GO:0051604|| protein maturation  || NO OVERLAP ||S.p.; S.c; M.m||
     350||GO:0006766||GO:0070647|| protein modification by small protein conjugation or removal  || NO OVERLAP ||S.p.; S.c; M.m {1 but looks wrong for UB med conjugation}||
     351||GO:0006766||GO:0006605|| protein targeting  || NO OVERLAP ||S.p.; S.c; M.m {5 but look dodgy}||
     352||GO:0006766||GO:0007346|| regulation of mitotic cell cycle  || NO OVERLAP ||S.p.; S.c; M.m {except tnf, check}||
     353||GO:0006766||GO:0042254|| ribosome biogenesis  || NO OVERLAP ||S.p.; S.c; M.m||
     354||GO:0006766||GO:0023052|| signaling  || MOUSE LOTS ||S.p.; S.c||
     355||GO:0006766||GO:0006399|| tRNA metabolic process  || SEE ABOVE ||-||
     356||GO:0006766||GO:0006351|| transcription, DNA-dependent  ||MOUSE LOTS ||S.p.||
     357||GO:0006766||GO:0055085|| transmembrane transport  || MOUSE LOTS ||S.p.||
     358||GO:0006766||GO:0007033|| vacuole organization  || NO OVERLAP ||S.p.; S.c; M.m||
     359||GO:0006766||GO:0016192|| vesicle-mediated transport  || NO OVERLAP ||S.p.; S.c; M.m||
    358360
    359361