Changes between Version 193 and Version 194 of MatrixProject


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Timestamp:
Jan 11, 2013, 4:37:45 PM (9 years ago)
Author:
val_wood
Comment:

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  • MatrixProject

    v193 v194  
    2121 * Distinguish between  direct and indirect effects and refine existing annotation
    2222 * etc
    23 
    24  == What is allowed in overlaps ? ==
    25 
    26 Annotations in intersections *always* fall into one or more the following types:
    27 
    28  *  Annotation to a term which is a child of both terms i.e pentose phosphate shunt is a child of nucleotide metabolism and carbohydrate metabolism. tRNA acetylation is a child or tRNA metabolism and amino acid metabolism
    29 
    30 
    31  * Regulatory upstream effects
    32    Upstream signalling pathway regulating both processes
    33      * Examples:
    34      * add signal transduction and transcriptional regulation examples
    35 
    36  *  Multifunctional gene products, for example NOC3 appears to function in both pathways of replication and rRNA processing (note this could be an example of 2... add better examples)
    37      * Examples:
    38      * urmylation pathway is involved in BOTH tRNA modification and "small molecule..."
    39      * add more examples
    40 
    4123 
    4224 == Method ==