Changes between Version 69 and Version 70 of MatrixProject


Ignore:
Timestamp:
Nov 6, 2012, 2:42:12 PM (9 years ago)
Author:
val_wood
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • MatrixProject

    v69 v70  
    88||GO:0006520 || has no overlap with|| GO:0006260 || DNA replication || - ||S.p; M. m (one bad IP mapping reported); S.c (3 queried) ||
    99||GO:0006520 || has no overlap with|| GO:0030437 || ascospore formation || - ||S.p; M.m (n/a); S.c. ||
    10 ||GO:0006520 || overlaps with|| GO:0005975 || carbohydrate metabolic process || DESCrIBe ||S.p ||
     10||GO:0006520 || has overlap with|| GO:0005975 || carbohydrate metabolic process || DESCrIBe ||S.p ||
    1111||GO:0006520 || has no overlap except || GO:0007155 || cell adhesion || GO:0006521 (regulation of cellular amino acid metabolic process)|| S.p; M.m (0 pending responses from 2 Uniprot annotations); S.c. ||
    1212||GO:0006520 || has no overlap except|| GO:0070882 || cellular cell wall organization or biogenesis ||GO:0004360 (glutamine-fructose-6-phosphate transaminase isomerizing activity) OR GO:0004067 (asparaginase activity)||S.p; M.m (n/a); S.c. ||
    1313||GO:0006520 || has no overlap except|| GO:0016568 || chromatin modification || GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) OR GO:0006355 (regulation of transcription, DNA dependent)||S.p; M.m.; S.c ||
    1414||GO:0006520 || has no overlap except  || GO:0051276 || chromosome organization  ||  when co-annotated to GO:0023052 (signaling) OR GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) || S.p; M.m.; S.c. ||
    15 ||GO:0006520 || has no overlaps with|| GO:0007059 || chromosome segregation || when co-annotated to GO:0023052 (signaling) || S.p; M m.; S.c. ||
    16 ||GO:0006520 || has overlaps with|| GO:0051186 || cofactor metabolic process  || DESCRIBE ||S.p ||
     15||GO:0006520 || has no overlap with|| GO:0007059 || chromosome segregation || when co-annotated to GO:0023052 (signaling) || S.p; M m.; S.c. ||
     16||GO:0006520 || has overlap with|| GO:0051186 || cofactor metabolic process  || DESCRIBE ||S.p ||
    1717
    1818||GO:0006520 || has no overlap with|| GO:0000747 || conjugation with cellular fusion  || - ||S.p; M.m (n/a); S.c. ||
    1919||GO:0006520 || has no overlap with|| GO:0000910 || cytokinesis || - ||S.p; M.m (pending apc update, iniprot); S.c. ||
    20 ||GO:0006520 || has overlaps with|| GO:0002181 || cytoplasmic translation (check translation****) || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c ||
     20||GO:0006520 || has overlap with|| GO:0002181 || cytoplasmic translation (check translation****) || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c ||
    2121||GO:0006520 || has no overlap with|| GO:0007010 || cytoskeleton organization  || except when co-annotated to GO:0023052 (signaling) ||S.p; M.m; S.c. ||
    2222||GO:0006520 || has no overlap except || GO:0007163 || establishment or maintenance of cell polarity  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m.; S.c. ||
     
    2626||GO:0006520 || has no overlap with|| GO:0007126 || meiosis  || - ||S.p; M.m; S.c.||
    2727||GO:0006520 || has no overlap with|| GO:0007005 || mitochondrion organization  || GO:0043039 (tRNA aminoacylation)    ||S.p (fusion proteins need column 17 annotations) bifunctional enzyme ilv5- need to idinetify specific GO term to allow this;||
    28 ||GO:0006520 || has overlaps with|| GO:0071941 || nitrogen cycle metabolic process  || - ||S.p ||
    29 ||GO:0006520 || has overlaps with|| GO:0055086 || nucleobase-containing small molecule metabolic process  || - ||S.p ||
     28||GO:0006520 || has overlap with|| GO:0071941 || nitrogen cycle metabolic process  || - ||S.p ||
     29||GO:0006520 || has overlap with|| GO:0055086 || nucleobase-containing small molecule metabolic process  || - ||S.p ||
    3030||GO:0006520 || has no overlap with|| GO:0006913 || nucleocytoplasmic transport  || - ||S.p; M.m (1 but should disappear pending response from Uniprot)||
    3131||GO:0006520 || has no overlap with|| GO:0007031 || peroxisome organization  || - ||S.p; M.m; S.c. ||
    3232||GO:0006520 || has no overlap except|| GO:0030163 || protein catabolic process  || GO:0006521 (regulation of amino acid metabolic process) ||S.p; S.c||
    3333||GO:0006520 || has no overlap with|| GO:0006461 || protein complex assembly  || - ||S.p;  (check Mouse); S.c ||
    34 ||GO:0006520 || has overlaps with|| GO:0006457 || protein folding  || describe ||S.p; M.m (reported 1 anomaly to MGI); S.c (queried 2 anomalies) ||
     34||GO:0006520 || has overlap with|| GO:0006457 || protein folding  || describe ||S.p; M.m (reported 1 anomaly to MGI); S.c (queried 2 anomalies) ||
    3535||GO:0006520 || has no overlap with|| GO:0006486 || protein glycosylation  || - ||S.p; S.c ||
    3636||GO:0006520 || has no overlap with|| GO:0051604 || protein maturation  || - ||S.p ||
     
    3939||GO:0006520 || has no overlap with|| GO:0007346 || regulation of mitotic cell cycle  || CHECK, other term has? ||S.p ||
    4040||GO:0006520 || has no overlap with|| GO:0042254 || ribosome biogenesis  || - ||S.p; M.m; S.c. || ||
    41 ||GO:0006520 || has overlaps with|| GO:0023052 || signaling  || - ||S.p; M.m; S.c ||
    42 ||GO:0006520 || has overlaps with|| GO:0006399 || tRNA metabolic process  || GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase  ||S.p; S.c (some checks outstanding) ||
     41||GO:0006520 || has overlap with|| GO:0023052 || signaling  || - ||S.p; M.m; S.c ||
     42||GO:0006520 || has overlap with|| GO:0006399 || tRNA metabolic process  || GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase  ||S.p; S.c (some checks outstanding) ||
    4343||GO:0006520 || has no overlap with|| GO:0006351 || transcription, DNA-dependent  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m ||
    4444||GO:0006520 || has no overlap with|| GO:0055085 || transmembrane transport  || - ||S.p; S.c (one ontology query) ||
     
    5050= tRNA metabolic process =
    5151
    52 ||GO:0006399|| has no overlaps with|| GO:0006310 || DNA recombination || - ||M.m||
    53 ||GO:0006399|| has no overlaps with|| GO:0006281 || DNA repair || - ||M.m.||
    54 ||GO:0006399|| has no overlaps with|| GO:0006260 || DNA replication || - ||M.m||
     52||GO:0006399|| has no overlap with|| GO:0006310 || DNA recombination || - ||M.m||
     53||GO:0006399|| has no overlap with|| GO:0006281 || DNA repair || - ||M.m.||
     54||GO:0006399|| has no overlap with|| GO:0006260 || DNA replication || - ||M.m||
    5555|| GO:0030437 || ascospore formation || - ||-||
    56 ||GO:0006399|| has no overlaps with|| GO:0005975 || carbohydrate metabolic process || - ||M.m||
     56||GO:0006399|| has no overlap with|| GO:0005975 || carbohydrate metabolic process || - ||M.m||
    5757|| GO:0007155 || cell adhesion || - ||-||
    5858|| GO:0006520 || cellular amino acid metabolic process || - ||-||
     
    6060|| GO:0016568 || chromatin modification || - ||-||
    6161|| GO:0051276 || chromosome organization  || - ||-||
    62 ||GO:0006399|| has no overlaps with|| GO:0007059 || chromosome segregation || - ||M.m.||
    63 ||GO:0006399|| has no overlaps except|| GO:0051186 || cofactor metabolic process  || GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)||M.m.||
    64 ||GO:0006399|| has no overlaps with|| GO:0000747 || conjugation with cellular fusion  || - ||M.m (n/a)||
    65 ||GO:0006399|| has no overlaps with|| GO:0000910 || cytokinesis || - ||M.m||
    66 ||GO:0006399|| has no overlaps with|| GO:0002181 || cytoplasmic translation  || - ||M.m.||
    67 ||GO:0006399|| has no overlaps with|| GO:0007010 || cytoskeleton organization  || - ||M.m.||
    68 ||GO:0006399|| has no overlaps with|| GO:0007163 || establishment or maintenance of cell polarity  || - ||M.m||
    69 ||GO:0006399|| has no overlaps with|| GO:0006091 || generation of precursor metabolites and energy  || - ||M.m.||
    70 ||GO:0006399|| has no overlaps with|| GO:0006629 || lipid metabolic process  || - ||M.m.||
     62||GO:0006399|| has no overlap with|| GO:0007059 || chromosome segregation || - ||M.m.||
     63||GO:0006399|| has no overlap except|| GO:0051186 || cofactor metabolic process  || GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)||M.m.||
     64||GO:0006399|| has no overlap with|| GO:0000747 || conjugation with cellular fusion  || - ||M.m (n/a)||
     65||GO:0006399|| has no overlap with|| GO:0000910 || cytokinesis || - ||M.m||
     66||GO:0006399|| has no overlap with|| GO:0002181 || cytoplasmic translation  || - ||M.m.||
     67||GO:0006399|| has no overlap with|| GO:0007010 || cytoskeleton organization  || - ||M.m.||
     68||GO:0006399|| has no overlap with|| GO:0007163 || establishment or maintenance of cell polarity  || - ||M.m||
     69||GO:0006399|| has no overlap with|| GO:0006091 || generation of precursor metabolites and energy  || - ||M.m.||
     70||GO:0006399|| has no overlap with|| GO:0006629 || lipid metabolic process  || - ||M.m.||
    7171|| GO:0016071 || mRNA metabolic process  || - ||-||
    7272|| GO:0007126 || meiosis  || - ||-||
     
    7474|| GO:0071941 || nitrogen cycle metabolic process  || - ||-||
    7575|| GO:0055086 || nucleobase-containing small molecule metabolic process  || - ||-||
    76 ||GO:0006399|| has no overlaps with|| GO:0006913 || nucleocytoplasmic transport  || - ||M.m||
    77 ||GO:0006399|| has no overlaps with|| GO:0007031 || peroxisome organization  || - ||M.m||
     76||GO:0006399|| has no overlap with|| GO:0006913 || nucleocytoplasmic transport  || - ||M.m||
     77||GO:0006399|| has no overlap with|| GO:0007031 || peroxisome organization  || - ||M.m||
    7878|| GO:0030163 || protein catabolic process  || - ||-||
    7979|| GO:0006461 || protein complex assembly  || - ||-||
     
    8282|| GO:0051604 || protein maturation  || - ||-||
    8383|| GO:0070647 || protein modification by small protein conjugation or removal  || - ||-||
    84 ||GO:0006399|| has no overlaps with|| GO:0006605 || protein targeting  || - ||M.m||
     84||GO:0006399|| has no overlap with|| GO:0006605 || protein targeting  || - ||M.m||
    8585|| GO:0007346 || regulation of mitotic cell cycle  || - ||-||
    8686|| GO:0042254 || ribosome biogenesis  || - ||-||
     
    8888|| GO:0006399 || tRNA metabolic process  || - ||-||
    8989|| GO:0006351 || transcription, DNA-dependent  || - ||-||
    90 ||GO:0006399|| has no overlaps with|| GO:0055085 || transmembrane transport  || - ||M.m||
    91 ||GO:0006399|| has no overlaps with|| GO:0007033 || vacuole organization  || - ||M.m.||
    92 ||GO:0006399|| has no overlaps with|| GO:0016192 || vesicle-mediated transport  || - ||M.m.||
    93 ||GO:0006399|| has no overlaps with|| GO:0006766 || vitamin metabolic process  || - ||M.m||
     90||GO:0006399|| has no overlap with|| GO:0055085 || transmembrane transport  || - ||M.m||
     91||GO:0006399|| has no overlap with|| GO:0007033 || vacuole organization  || - ||M.m.||
     92||GO:0006399|| has no overlap with|| GO:0016192 || vesicle-mediated transport  || - ||M.m.||
     93||GO:0006399|| has no overlap with|| GO:0006766 || vitamin metabolic process  || - ||M.m||
    9494
    9595