Changes between Version 79 and Version 80 of MatrixProject


Ignore:
Timestamp:
Nov 7, 2012, 8:54:37 AM (9 years ago)
Author:
val_wood
Comment:

--

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  • MatrixProject

    v79 v80  
    44
    55|| term ID || intersect || term ID || term name || except via (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets|| comments/checked in species ||
    6 ||GO:0006520 || has no overlap with|| GO:0006310 || DNA recombination || - || S.p; M.m; S.c. ||
    7 ||GO:0006520 || has no overlap except|| GO:0006281 || DNA repair || GO:0006521 (regulation of cellular amino acid metabolic process -NOTE transcriptional), GO:0006338 (chromatin remodelling- NOTE, this may be indirect for repair???) ||S.p; M.m (one bad IP mapping reported); S.c. (one query)||
    8 ||GO:0006520 || has no overlap with|| GO:0006260 || DNA replication || - ||S.p; M. m (one bad IP mapping reported); S.c (3 queried) ||
    9 ||GO:0006520 || has no overlap with|| GO:0030437 || ascospore formation || - ||S.p; M.m (n/a); S.c. ||
    10 ||GO:0006520 || has overlap with|| GO:0005975 || carbohydrate metabolic process || DESCrIBe ||S.p ||
    11 ||GO:0006520 || has no overlap except || GO:0007155 || cell adhesion || GO:0006521 (regulation of cellular amino acid metabolic process)|| S.p; M.m (0 pending responses from 2 Uniprot annotations); S.c. ||
    12 ||GO:0006520 || has no overlap except|| GO:0070882 || cellular cell wall organization or biogenesis ||GO:0004360 (glutamine-fructose-6-phosphate transaminase isomerizing activity) OR GO:0004067 (asparaginase activity)||S.p; M.m (n/a); S.c. ||
    13 ||GO:0006520 || has no overlap except|| GO:0016568 || chromatin modification || GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) OR GO:0006355 (regulation of transcription, DNA dependent)||S.p; M.m.; S.c ||
    14 ||GO:0006520 || has no overlap except  || GO:0051276 || chromosome organization  ||  when co-annotated to GO:0023052 (signaling) OR GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) || S.p; M.m.; S.c. ||
    15 ||GO:0006520 || has no overlap with|| GO:0007059 || chromosome segregation || when co-annotated to GO:0023052 (signaling) || S.p; M m.; S.c. ||
    16 ||GO:0006520 || has overlap with|| GO:0051186 || cofactor metabolic process  || DESCRIBE ||S.p ||
     6||GO:0006520 || GO:0006310 || DNA recombination || NO OVERLAP || S.p; M.m; S.c. ||
     7||GO:0006520 || GO:0006281 || DNA repair || GO:0006521 (regulation of cellular amino acid metabolic process -NOTE transcriptional) OR GO:0006338 (chromatin remodelling- NOTE, this may be indirect for repair???) ||S.p; M.m (one bad IP mapping reported); S.c. (one query)||
     8||GO:0006520 || GO:0006260 || DNA replication || NO OVERLAP ||S.p; M. m (one bad IP mapping reported); S.c (3 queried) ||
     9||GO:0006520 || GO:0030437 || ascospore formation || NO OVERLAP ||S.p; M.m (n/a); S.c. ||
     10||GO:0006520 || GO:0005975 || carbohydrate metabolic process || LOTS (add details later) ||S.p ||
     11||GO:0006520 || GO:0007155 || cell adhesion || GO:0006521 (regulation of cellular amino acid metabolic process)|| S.p; M.m (0 pending responses from 2 Uniprot annotations); S.c. ||
     12||GO:0006520 || GO:0070882 || cellular cell wall organization or biogenesis ||GO:0004360 (glutamine-fructose-6-phosphate transaminase isomerizing activity) OR GO:0004067 (asparaginase activity)||S.p; M.m (n/a); S.c. ||
     13||GO:0006520 || GO:0016568 || chromatin modification || GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) OR GO:0006355 (regulation of transcription, DNA dependent)||S.p; M.m.; S.c ||
     14||GO:0006520 || GO:0051276 || chromosome organization  ||  GO:0023052 (signaling, upstream) OR GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) || S.p; M.m.; S.c. ||
     15||GO:0006520 || GO:0007059 || chromosome segregation || GO:0023052 (signaling, upstream) || S.p; M m.; S.c. ||
     16||GO:0006520 || GO:0051186 || cofactor metabolic process  || LOTS (add details later) ||S.p ||
    1717
    18 ||GO:0006520 || has no overlap with|| GO:0000747 || conjugation with cellular fusion  || - ||S.p; M.m (n/a); S.c. ||
    19 ||GO:0006520 || has no overlap with|| GO:0000910 || cytokinesis || - ||S.p; M.m (pending apc update, iniprot); S.c. ||
    20 ||GO:0006520 || has overlap with|| GO:0002181 || cytoplasmic translation (check translation****) || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c ||
    21 ||GO:0006520 || has no overlap with|| GO:0007010 || cytoskeleton organization  || except when co-annotated to GO:0023052 (signaling) ||S.p; M.m; S.c. ||
    22 ||GO:0006520 || has no overlap except || GO:0007163 || establishment or maintenance of cell polarity  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m.; S.c. ||
    23 ||GO:0006520 || has overlap with|| GO:0006091 || generation of precursor metabolites and energy  || DESCRIBE||S.p ||
    24 ||GO:0006520 || has no overlap with|| GO:0006629 || lipid metabolic process  || GO:0006521 (regulation of cellular amino acid metabolic process) OR (coannotated with) GO:0023052 (signaling) ||S.p; M.m.; S.c  ||
    25 ||GO:0006520 || has no overlap with|| GO:0016071 || mRNA metabolic process  || - ||S.p; M.m (0 pending uniprot feedback); S.c. ||
    26 ||GO:0006520 || has no overlap with|| GO:0007126 || meiosis  || - ||S.p; M.m; S.c.||
    27 ||GO:0006520 || has no overlap with|| GO:0007005 || mitochondrion organization  || GO:0043039 (tRNA aminoacylation)   OR GO:0003994 (aconitate hydratase) ||S.p (fusion proteins need column 17 annotations) bifunctional enzyme ilv5- need to idinetify specific GO term to allow this;||
     18||GO:0006520 || GO:0000747 || conjugation with cellular fusion  || NO OVERLAP ||S.p; M.m (n/a); S.c. ||
     19||GO:0006520 || GO:0000910 || cytokinesis || NO OVERLAP ||S.p; M.m (pending apc update, iniprot); S.c. ||
     20||GO:0006520 || GO:0002181 || cytoplasmic translation || GO:0043039 (tRNA aminoacylation) ||S.p. M.m; S.c ||
     21||GO:0006520 || GO:0007010 || cytoskeleton organization  || GO:0023052 (signaling, upstream) ||S.p; M.m; S.c.  (NOTE check translation too****) ||
     22||GO:0006520 || GO:0007163 || establishment or maintenance of cell polarity  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m.; S.c. ||
     23||GO:0006520 || GO:0006091 || generation of precursor metabolites and energy  || LOTS (add details later)||S.p ||
     24||GO:0006520 || GO:0006629 || lipid metabolic process  || GO:0006521 (regulation of cellular amino acid metabolic process) OR  GO:0023052 (signaling, upstream) ||S.p; M.m.; S.c  ||
     25||GO:0006520 || GO:0016071 || mRNA metabolic process  || NO OVERLAP || ||S.p; M.m (0 pending uniprot feedback); S.c. ||
     26||GO:0006520 || GO:0007126 || meiosis  || NO OVERLAP || ||S.p; M.m; S.c.||
     27||GO:0006520 || GO:0007005 || mitochondrion organization  || GO:0043039 (tRNA aminoacylation) OR GO:0003994 (aconitate hydratase) || S.p (fusion proteins need column 17 annotations) bifunctional enzyme ilv5- need to idinetify specific GO term to allow this;||
    2828||GO:0006520 || has overlap with|| GO:0071941 || nitrogen cycle metabolic process  || - ||S.p ||
    2929||GO:0006520 || has overlap with|| GO:0055086 || nucleobase-containing small molecule metabolic process  || - ||S.p ||
    30 ||GO:0006520 || has no overlap with|| GO:0006913 || nucleocytoplasmic transport  || - ||S.p; M.m (1 but should disappear pending response from Uniprot)||
    31 ||GO:0006520 || has no overlap with|| GO:0007031 || peroxisome organization  || - ||S.p; M.m; S.c. ||
    32 ||GO:0006520 || has no overlap except|| GO:0030163 || protein catabolic process  || GO:0006521 (regulation of amino acid metabolic process) ||S.p; S.c||
    33 ||GO:0006520 || has no overlap with|| GO:0006461 || protein complex assembly  || - ||S.p;  (check Mouse); S.c ||
     30||GO:0006520 || GO:0006913 || nucleocytoplasmic transport  || NO OVERLAP || ||S.p; M.m (1 but should disappear pending response from Uniprot)||
     31||GO:0006520 || GO:0007031 || peroxisome organization  || NO OVERLAP || ||S.p; M.m; S.c. ||
     32||GO:0006520 || GO:0030163 || protein catabolic process  || GO:0006521 (regulation of amino acid metabolic process) ||S.p; S.c||
     33||GO:0006520 || GO:0006461 || protein complex assembly  || NO OVERLAP || ||S.p;  (check Mouse); S.c ||
    3434||GO:0006520 || has overlap with|| GO:0006457 || protein folding  || describe ||S.p; M.m (reported 1 anomaly to MGI); S.c (queried 2 anomalies) ||
    35 ||GO:0006520 || has no overlap with|| GO:0006486 || protein glycosylation  || - ||S.p; S.c ||
    36 ||GO:0006520 || has no overlap with|| GO:0051604 || protein maturation  || - ||S.p ||
    37 ||GO:0006520 || has no overlap except|| GO:0070647 || protein modification by small protein conjugation or removal  ||  GO:0006521 (regulation of cellular amino acid metabolic process) ||S.p; M.m (querying 3 annotations, one derived from uniprot human, and 2 MGI); S.c (querying 1) ||
    38 ||GO:0006520 || has no overlap with|| GO:0006605 || protein targeting  || - ||S.p; M.m; S.c ||
     35||GO:0006520 || GO:0006486 || protein glycosylation  || NO OVERLAP || ||S.p; S.c ||
     36||GO:0006520 || GO:0051604 || protein maturation  || NO OVERLAP || ||S.p ||
     37||GO:0006520 || GO:0070647 || protein modification by small protein conjugation or removal  ||  GO:0006521 (regulation of cellular amino acid metabolic process) ||S.p; M.m (querying 3 annotations, one derived from uniprot human, and 2 MGI); S.c (querying 1) ||
     38||GO:0006520 || GO:0006605 || protein targeting  || NO OVERLAP ||||S.p; M.m; S.c ||
    3939||GO:0006520 || has no overlap with|| GO:0007346 || regulation of mitotic cell cycle  || CHECK, other term has? ||S.p ||
    40 ||GO:0006520 || has no overlap with|| GO:0042254 || ribosome biogenesis  || - ||S.p; M.m; S.c. || ||
     40||GO:0006520 || GO:0042254 || ribosome biogenesis  || NO OVERLAP || ||S.p; M.m; S.c. || ||
    4141||GO:0006520 || has overlap with|| GO:0023052 || signaling  || - ||S.p; M.m; S.c ||
    42 ||GO:0006520 || has overlap with|| GO:0006399 || tRNA metabolic process  || GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase  ||S.p; M.m. S.c (some checks outstanding) ||
    43 ||GO:0006520 || has no overlap with|| GO:0006351 || transcription, DNA-dependent  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m ||
    44 ||GO:0006520 || has no overlap with|| GO:0055085 || transmembrane transport  || - ||S.p; S.c (one ontology query) ||
    45 ||GO:0006520 || has no overlap with|| GO:0007033 || vacuole organization  || - ||S.p; S.c ||
    46 ||GO:0006520 || has no overlap except|| GO:0016192 || vesicle-mediated transport  || regulation of vesicle mediated transport & regulation of amino acid metabolism (BOTH, via regulation of transcription) ||S.p; S.c. ||
    47 ||GO:0006520 || has overlaps with|| GO:0006766 || vitamin metabolic process  || GO:0004586 (ornithine decarboxylase activity); GO:0004372 (glycine hydroxymethyltransferase activity) ||S.p; M.m (one query to fix); S.c. (some SPKW to remove check sno1,2,3) ||
     42||GO:0006520 || GO:0006399 || tRNA metabolic process  || GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase  ||S.p; M.m. S.c (some checks outstanding) ||
     43||GO:0006520 || GO:0006351 || transcription, DNA-dependent  || GO:0006355 (regulation of transcription, DNA dependent) ||S.p; M.m ||
     44||GO:0006520 || GO:0055085 || transmembrane transport  || NO OVERLAP || ||S.p; S.c (one ontology query) ||
     45||GO:0006520 || GO:0007033 || vacuole organization  || NO OVERLAP || ||S.p; S.c ||
     46||GO:0006520 || GO:0016192 || vesicle-mediated transport  || regulation of vesicle mediated transport & regulation of amino acid metabolism (BOTH, via regulation of transcription) ||S.p; S.c. ||
     47||GO:0006520 || GO:0006766 || vitamin metabolic process  || GO:0004586 (ornithine decarboxylase activity); GO:0004372 (glycine hydroxymethyltransferase activity) ||S.p; M.m (one query to fix); S.c. (some SPKW to remove check sno1,2,3) ||
    4848
    4949