wiki:MatrixProject

Version 58 (modified by antonialock, 9 years ago) (diff)

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Amino acid metabolism

term ID intersect term ID term name except via (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets comments/checked in species
GO:0006520 has no overlap with GO:0006310 DNA recombination - S.p; M.m; S.c.
GO:0006520 has no overlap except GO:0006281 DNA repair GO:0006521 (regulation of cellular amino acid metabolic process -NOTE transcriptional), GO:0006338 (chromatin remodelling- NOTE, this may be indirect for repair???) S.p; M.m (one bad IP mapping reported); S.c. (one query)
GO:0006520 has no overlap with GO:0006260 DNA replication - S.p; M. m (one bad IP mapping reported); S.c (3 queried)
GO:0006520 has no overlap with GO:0030437 ascospore formation - S.p; M.m (n/a); S.c.
GO:0006520 overlaps with GO:0005975 carbohydrate metabolic process DESCrIBe S.p
GO:0006520 has no overlap except GO:0007155 cell adhesion GO:0006521 (regulation of cellular amino acid metabolic process) S.p; M.m (0 pending responses from 2 Uniprot annotations); S.c.
GO:0006520 has no overlap except GO:0070882 cellular cell wall organization or biogenesis GO:0004360 (glutamine-fructose-6-phosphate transaminase isomerizing activity) OR GO:0004067 (asparaginase activity)S.p; M.m (n/a); S.c.
GO:0006520 has no overlap except GO:0016568 chromatin modification GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) S.p; (check mouse*); S.c
GO:0006520 has no overlap except GO:0051276 chromosome organization when co-annotated to GO:0023052 (signaling) OR GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) S.p; M.m.; S.c.
GO:0006520 has no overlaps with GO:0007059 chromosome segregation when co-annotated to GO:0023052 (signaling) S.p; M m.; S.c.
GO:0006520 has overlaps with GO:0051186 cofactor metabolic process DESCRIBE S.p
GO:0006520 has no overlap with GO:0000747 conjugation with cellular fusion - S.p; M.m (n/a); S.c.
GO:0006520 has no overlap with GO:0000910 cytokinesis - S.p; M.m (pending apc update, iniprot); S.c.
GO:0006520 has overlaps with GO:0002181 cytoplasmic translation (check translation) GO:0043039 (tRNA aminoacylation) S.p. M.m; S.c
GO:0006520 has no overlap with GO:0007010 cytoskeleton organization except when co-annotated to GO:0023052 (signaling) S.p; M.m; S.c.
GO:0006520 has no overlap with GO:0007163 establishment or maintenance of cell polarity - S.p; S.c.
GO:0006520 has overlap with GO:0006091 generation of precursor metabolites and energy DESCRIBES.p
GO:0006520 has no overlap with GO:0006629 lipid metabolic process GO:0006521 (regulation of cellular amino acid metabolic process) S.p; S.c
GO:0006520 has no overlap with GO:0016071 mRNA metabolic process - S.p; M.m (0 pending uniprot feedback); S.c.
GO:0006520 has no overlap with GO:0007126 meiosis - S.p; M.m; S.c.
GO:0006520 has no overlap with GO:0007005 mitochondrion organization GO:0043039 (tRNA aminoacylation) S.p (fusion proteins need column 17 annotations) bifunctional enzyme ilv5- need to idinetify specific GO term to allow this;
GO:0006520 has overlaps with GO:0071941 nitrogen cycle metabolic process - S.p
GO:0006520 has overlaps with GO:0055086 nucleobase-containing small molecule metabolic process - S.p
GO:0006520 has no overlap with GO:0006913 nucleocytoplasmic transport - S.p; M.m (1 but should disappear pending response from Uniprot)
GO:0006520 has no overlap with GO:0007031 peroxisome organization - S.p; M.m; S.c.
GO:0006520 has no overlap except GO:0030163 protein catabolic process GO:0006521 (regulation of amino acid metabolic process) S.p; S.c
GO:0006520 has no overlap with GO:0006461 protein complex assembly - S.p; (check Mouse); S.c
GO:0006520 has overlaps with GO:0006457 protein folding describe S.p; M.m (reported 1 anomaly to MGI); S.c (queried 2 anomalies)
GO:0006520 has no overlap with GO:0006486 protein glycosylation - S.p; S.c
GO:0006520 has no overlap with GO:0051604 protein maturation - S.p
GO:0006520 has no overlap except GO:0070647 protein modification by small protein conjugation or removal GO:0006521 (regulation of cellular amino acid metabolic process) S.p; M.m (querying 3 annotations, one derived from uniprot human, and 2 MGI); S.c (querying 1)
GO:0006520 has no overlap with GO:0006605 protein targeting - S.p; M.m; S.c
GO:0006520 has no overlap with GO:0007346 regulation of mitotic cell cycle CHECK, other term has? S.p
GO:0006520 has no overlap with GO:0042254 ribosome biogenesis - S.p; M.m; S.c.
GO:0006520 has overlaps with GO:0023052 signaling - S.p; M.m; S.c
GO:0006520 has overlaps with GO:0006399 tRNA metabolic process GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase S.p; S.c (some checks outstanding)
GO:0006520 has no overlap with GO:0006351 transcription, DNA-dependent except via "regulation of transcription..." S.p; M.m
GO:0006520 has no overlap with GO:0055085 transmembrane transport - S.p; S.c (one ontology query)
GO:0006520 has no overlap with GO:0007033 vacuole organization - S.p; S.c
GO:0006520 has no overlap except GO:0016192 vesicle-mediated transport regulation of vesicle mediated transport & regulation of amino acid metabolism (BOTH, via regulation of transcription) S.p; S.c.
GO:0006520 has overlaps with GO:0006766 vitamin metabolic process GO:0004586 (ornithine decarboxylase activity); GO:0004372 (glycine hydroxymethyltransferase activity) S.p; M.m (one query to fix); S.c. (some SPKW to remove)

Template for process specific tables

GO:0006310 DNA recombination -
GO:0006281 DNA repair -
GO:0006260 DNA replication -
GO:0030437 ascospore formation -
GO:0005975 carbohydrate metabolic process -
GO:0007155 cell adhesion -
GO:0006520 cellular amino acid metabolic process -
GO:0070882 cellular cell wall organization or biogenesis -
GO:0016568 chromatin modification -
GO:0051276 chromosome organization -
GO:0007059 chromosome segregation -
GO:0051186 cofactor metabolic process -
GO:0000747 conjugation with cellular fusion -
GO:0000910 cytokinesis -
GO:0002181 cytoplasmic translation -
GO:0007010 cytoskeleton organization -
GO:0007163 establishment or maintenance of cell polarity -
GO:0006091 generation of precursor metabolites and energy -
GO:0006629 lipid metabolic process -
GO:0016071 mRNA metabolic process -
GO:0007126 meiosis -
GO:0007005 mitochondrion organization -
GO:0071941 nitrogen cycle metabolic process -
GO:0055086 nucleobase-containing small molecule metabolic process -
GO:0006913 nucleocytoplasmic transport -
GO:0007031 peroxisome organization -
GO:0030163 protein catabolic process -
GO:0006461 protein complex assembly -
GO:0006457 protein folding -
GO:0006486 protein glycosylation -
GO:0051604 protein maturation -
GO:0070647 protein modification by small protein conjugation or removal -
GO:0006605 protein targeting -
GO:0007346 regulation of mitotic cell cycle -
GO:0042254 ribosome biogenesis -
GO:0023052 signaling -
GO:0006399 tRNA metabolic process -
GO:0006351 transcription, DNA-dependent -
GO:0055085 transmembrane transport -
GO:0007033 vacuole organization -
GO:0016192 vesicle-mediated transport -
GO:0006766 vitamin metabolic process -

Protein glycosylation

term ID intersect term ID term name except via (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets comments/checked in species
GO:0006486 has no overlap with GO:0006520 cellular amino acid metabolic process - S.p
GO:0006486 GO:0006310 DNA recombination - S.p
GO:0006486 GO:0006281 DNA repair S.p
GO:0006486 GO:0006260 DNA replication S.p
GO:0006486 has no overlap with GO:0030437 ascospore formation S.p
GO:0006486 GO:0005975 carbohydrate metabolic process S.p
GO:0006486 GO:0007155 cell adhesion S.p
GO:0006486 has no overlap with GO:0070882 cellular cell wall organization or biogenesis S.p
GO:0006486 GO:0016568 chromatin modification S.p
GO:0006486 GO:0051276 chromosome organization - S.p
GO:0006486 has no overlap with GO:0007059 chromosome segregation - S.p
GO:0006486 GO:0051186 cofactor metabolic process S.p
GO:0006486 has no overlap with GO:0000747 conjugation with cellular fusion S.p
GO:0006486 has no overlap with GO:0000910 cytokinesis S.p
GO:0006486 has no overlap with GO:0002181 cytoplasmic translation (check translation) S.p
GO:0006486 GO:0007010 cytoskeleton organization S.p
GO:0006486 GO:0007163 establishment or maintenance of cell polarity S.p; S.c.
GO:0006486 has overlap with GO:0006091 generation of precursor metabolites and energy S.p
GO:0006486 GO:0006629 lipid metabolic process S.p; S.c
GO:0006486 has no overlap with GO:0016071 mRNA metabolic process - S.p
GO:0006486 has no overlap with GO:0007126 meiosis - S.p.
GO:0006486 GO:0007005 mitochondrion organization S.p
GO:0006486 has no overlap with GO:0071941 nitrogen cycle metabolic process - S.p
GO:0006486 GO:0055086 nucleobase-containing small molecule metabolic process - S.p
GO:0006486 GO:0006913 nucleocytoplasmic transport -
GO:0006486 has no overlap with GO:0007031 peroxisome organization - S.p
GO:0006486 GO:0030163 protein catabolic process S.p; S.c
GO:0006486 GO:0006461 protein complex assembly - S.p
GO:0006486 GO:0006457 protein folding S.p
GO:0006486 GO:0006486 protein glycosylation S.p
GO:0006486 GO:0051604 protein maturation -S.p
GO:0006486 GO:0070647 protein modification by small protein conjugation or removal S.p
GO:0006486 GO:0006605 protein targeting - S.p
GO:0006486 has no overlap with GO:0007346 regulation of mitotic cell cycle S.p
GO:0006486 has no overlap with GO:0042254 ribosome biogenesis - S.p
GO:0006486 GO:0023052 signaling S.p
GO:0006486 has no overlap with GO:0006399 tRNA metabolic process S.p
GO:0006486 GO:0006351 transcription, DNA-dependent S.p
GO:0006486 GO:0055085 transmembrane transport S.p
GO:0006486 GO:0007033 vacuole organization S.p
GO:0006486 GO:0016192 vesicle-mediated transport S.p
GO:0006486 has no overlap with GO:0006766 vitamin metabolic process S.p

Template to type into Matrix GO:0006310 GO:0006281 GO:0006260 GO:0030437 GO:0005975 GO:0007155 GO:0006520 GO:0070882 GO:0016568 GO:0051276 GO:0007059 GO:0051186 GO:0000747 GO:0000910 GO:0002181 GO:0007010 GO:0007163 GO:0006091 GO:0006629 GO:0016071 GO:0007126 GO:0007005 GO:0071941 GO:0055086 GO:0006913 GO:0007031 GO:0030163 GO:0006461 GO:0006457 GO:0006486 GO:0051604 GO:0070647 GO:0006605 GO:0007346 GO:0042254 GO:0023052 GO:0006399 GO:0006351 GO:0055085 GO:0007033 GO:0016192 GO:0006766