wiki:MatrixProject

Version 80 (modified by val_wood, 9 years ago) (diff)

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Amino acid metabolism

term ID intersect term ID term name except via (everything in this column which is NOT a GO ID or "OR/AND" needs to be in brackets comments/checked in species
GO:0006520 GO:0006310 DNA recombination NO OVERLAP S.p; M.m; S.c.
GO:0006520 GO:0006281 DNA repair GO:0006521 (regulation of cellular amino acid metabolic process -NOTE transcriptional) OR GO:0006338 (chromatin remodelling- NOTE, this may be indirect for repair???) S.p; M.m (one bad IP mapping reported); S.c. (one query)
GO:0006520 GO:0006260 DNA replication NO OVERLAP S.p; M. m (one bad IP mapping reported); S.c (3 queried)
GO:0006520 GO:0030437 ascospore formation NO OVERLAP S.p; M.m (n/a); S.c.
GO:0006520 GO:0005975 carbohydrate metabolic process LOTS (add details later) S.p
GO:0006520 GO:0007155 cell adhesion GO:0006521 (regulation of cellular amino acid metabolic process) S.p; M.m (0 pending responses from 2 Uniprot annotations); S.c.
GO:0006520 GO:0070882 cellular cell wall organization or biogenesis GO:0004360 (glutamine-fructose-6-phosphate transaminase isomerizing activity) OR GO:0004067 (asparaginase activity)S.p; M.m (n/a); S.c.
GO:0006520 GO:0016568 chromatin modification GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) OR GO:0006355 (regulation of transcription, DNA dependent)S.p; M.m.; S.c
GO:0006520 GO:0051276 chromosome organization GO:0023052 (signaling, upstream) OR GO:0006521 (regulation of cellular amino acid metabolic process- transcriptional) S.p; M.m.; S.c.
GO:0006520 GO:0007059 chromosome segregation GO:0023052 (signaling, upstream) S.p; M m.; S.c.
GO:0006520 GO:0051186 cofactor metabolic process LOTS (add details later) S.p
GO:0006520 GO:0000747 conjugation with cellular fusion NO OVERLAP S.p; M.m (n/a); S.c.
GO:0006520 GO:0000910 cytokinesis NO OVERLAP S.p; M.m (pending apc update, iniprot); S.c.
GO:0006520 GO:0002181 cytoplasmic translation GO:0043039 (tRNA aminoacylation) S.p. M.m; S.c
GO:0006520 GO:0007010 cytoskeleton organization GO:0023052 (signaling, upstream) S.p; M.m; S.c. (NOTE check translation too)
GO:0006520 GO:0007163 establishment or maintenance of cell polarity GO:0006355 (regulation of transcription, DNA dependent) S.p; M.m.; S.c.
GO:0006520 GO:0006091 generation of precursor metabolites and energy LOTS (add details later)S.p
GO:0006520 GO:0006629 lipid metabolic process GO:0006521 (regulation of cellular amino acid metabolic process) OR GO:0023052 (signaling, upstream) S.p; M.m.; S.c
GO:0006520 GO:0016071 mRNA metabolic process NO OVERLAP S.p; M.m (0 pending uniprot feedback); S.c.
GO:0006520 GO:0007126 meiosis NO OVERLAP S.p; M.m; S.c.
GO:0006520 GO:0007005 mitochondrion organization GO:0043039 (tRNA aminoacylation) OR GO:0003994 (aconitate hydratase) S.p (fusion proteins need column 17 annotations) bifunctional enzyme ilv5- need to idinetify specific GO term to allow this;
GO:0006520 has overlap with GO:0071941 nitrogen cycle metabolic process - S.p
GO:0006520 has overlap with GO:0055086 nucleobase-containing small molecule metabolic process - S.p
GO:0006520 GO:0006913 nucleocytoplasmic transport NO OVERLAP S.p; M.m (1 but should disappear pending response from Uniprot)
GO:0006520 GO:0007031 peroxisome organization NO OVERLAP S.p; M.m; S.c.
GO:0006520 GO:0030163 protein catabolic process GO:0006521 (regulation of amino acid metabolic process) S.p; S.c
GO:0006520 GO:0006461 protein complex assembly NO OVERLAP S.p; (check Mouse); S.c
GO:0006520 has overlap with GO:0006457 protein folding describe S.p; M.m (reported 1 anomaly to MGI); S.c (queried 2 anomalies)
GO:0006520 GO:0006486 protein glycosylation NO OVERLAP S.p; S.c
GO:0006520 GO:0051604 protein maturation NO OVERLAP S.p
GO:0006520 GO:0070647 protein modification by small protein conjugation or removal GO:0006521 (regulation of cellular amino acid metabolic process) S.p; M.m (querying 3 annotations, one derived from uniprot human, and 2 MGI); S.c (querying 1)
GO:0006520 GO:0006605 protein targeting NO OVERLAP S.p; M.m; S.c
GO:0006520 has no overlap with GO:0007346 regulation of mitotic cell cycle CHECK, other term has? S.p
GO:0006520 GO:0042254 ribosome biogenesis NO OVERLAP S.p; M.m; S.c.
GO:0006520 has overlap with GO:0023052 signaling - S.p; M.m; S.c
GO:0006520 GO:0006399 tRNA metabolic process GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase S.p; M.m. S.c (some checks outstanding)
GO:0006520 GO:0006351 transcription, DNA-dependent GO:0006355 (regulation of transcription, DNA dependent) S.p; M.m
GO:0006520 GO:0055085 transmembrane transport NO OVERLAP S.p; S.c (one ontology query)
GO:0006520 GO:0007033 vacuole organization NO OVERLAP S.p; S.c
GO:0006520 GO:0016192 vesicle-mediated transport regulation of vesicle mediated transport & regulation of amino acid metabolism (BOTH, via regulation of transcription) S.p; S.c.
GO:0006520 GO:0006766 vitamin metabolic process GO:0004586 (ornithine decarboxylase activity); GO:0004372 (glycine hydroxymethyltransferase activity) S.p; M.m (one query to fix); S.c. (some SPKW to remove check sno1,2,3)

tRNA metabolic process

GO:0006399 has no overlap with GO:0006310 DNA recombination - M.m
GO:0006399 has no overlap with GO:0006281 DNA repair - M.m.
GO:0006399 has no overlap with GO:0006260 DNA replication - M.m
GO:0006399 has no overlap with GO:0030437 ascospore formation - M.m (n/a)
GO:0006399 has no overlap with GO:0005975 carbohydrate metabolic process - M.m
GO:0006399 has no overlap with GO:0007155 cell adhesion - M.m.
GO:0006399 has overlap with GO:0006520 cellular amino acid metabolic process GO:0043039 (tRNA aminoacylation) OR (GO:0031071)) cysteine desulphurase S.p; M.m
GO:0006399 has no overlap with GO:0070882 cellular cell wall organization or biogenesis - M.m (n/a)
GO:0006399 has no overlap with GO:0016568 chromatin modification - M.m
GO:0006399 has no overlap with GO:0051276 chromosome organization - M.m
GO:0006399 has no overlap with GO:0007059 chromosome segregation - M.m.
GO:0006399 has no overlap except GO:0051186 cofactor metabolic process GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)M.m.
GO:0006399 has no overlap with GO:0000747 conjugation with cellular fusion - M.m (n/a)
GO:0006399 has no overlap with GO:0000910 cytokinesis - M.m
GO:0006399 has no overlap with GO:0002181 cytoplasmic translation - M.m.
GO:0006399 has no overlap with GO:0007010 cytoskeleton organization - M.m.
GO:0006399 has no overlap with GO:0007163 establishment or maintenance of cell polarity - M.m
GO:0006399 has no overlap with GO:0006091 generation of precursor metabolites and energy - M.m.
GO:0006399 has no overlap with GO:0006629 lipid metabolic process - M.m.
GO:0006520 has no overlap with GO:0016071 mRNA metabolic process - M.m. (some changes pending)
GO:0006520 has no overlap with GO:0007126 meiosis - -
GO:0006520 has no overlap with GO:0007005 mitochondrion organization GO:0043039 (tRNA aminoacylation) M.m.
GO:0006399 has no overlap with GO:0071941 nitrogen cycle metabolic process - M.m.
GO:0006399 has no overlap with GO:0055086 nucleobase-containing small molecule metabolic process GO:0008479 (queuine tRNA-ribosyltransferase activity) OR GO:0003924 (GTPase activity, specifically IPR004520)M.m
GO:0006399 has no overlap with GO:0006913 nucleocytoplasmic transport - M.m
GO:0006399 has no overlap with GO:0007031 peroxisome organization - M.m
GO:0006399 has no overlap withGO:0030163 protein catabolic process - -
GO:0006399 has no overlap withGO:0006461 protein complex assembly - M.m (need to deal with protein tetramerization)
GO:0006399 has no overlap withGO:0006457 protein folding - M.m
GO:0006399 has no overlap withGO:0006486 protein glycosylation - M.m.
GO:0051604 protein maturation - -
GO:0006399 has no overlap withGO:0070647 protein modification by small protein conjugation or removal - M.m.
GO:0006399 has no overlap with GO:0006605 protein targeting - M.m
GO:0007346 regulation of mitotic cell cycle - -
GO:0006399 has no overlap exceptGO:0042254 ribosome biogenesis GO:0004540 (ribonuclease activity) M.m.
GO:0023052 signaling - -
GO:0006351 transcription, DNA-dependent - -
GO:0006399 has no overlap with GO:0055085 transmembrane transport - M.m
GO:0006399 has no overlap with GO:0007033 vacuole organization - M.m.
GO:0006399 has no overlap with GO:0016192 vesicle-mediated transport - M.m.
GO:0006399 has no overlap with GO:0006766 vitamin metabolic process - M.m

Template for process specific tables

GO:0006310 DNA recombination - -
GO:0006281 DNA repair - -
GO:0006260 DNA replication - -
GO:0030437 ascospore formation - -
GO:0005975 carbohydrate metabolic process - -
GO:0007155 cell adhesion - -
GO:0006520 cellular amino acid metabolic process - -
GO:0070882 cellular cell wall organization or biogenesis - -
GO:0016568 chromatin modification - -
GO:0051276 chromosome organization - -
GO:0007059 chromosome segregation - -
GO:0051186 cofactor metabolic process - -
GO:0000747 conjugation with cellular fusion - -
GO:0000910 cytokinesis - -
GO:0002181 cytoplasmic translation - -
GO:0007010 cytoskeleton organization - -
GO:0007163 establishment or maintenance of cell polarity - -
GO:0006091 generation of precursor metabolites and energy - -
GO:0006629 lipid metabolic process - -
GO:0016071 mRNA metabolic process - -
GO:0007126 meiosis - -
GO:0007005 mitochondrion organization - -
GO:0071941 nitrogen cycle metabolic process - -
GO:0055086 nucleobase-containing small molecule metabolic process - -
GO:0006913 nucleocytoplasmic transport - -
GO:0007031 peroxisome organization - -
GO:0030163 protein catabolic process - -
GO:0006461 protein complex assembly - -
GO:0006457 protein folding - -
GO:0006486 protein glycosylation - -
GO:0051604 protein maturation - -
GO:0070647 protein modification by small protein conjugation or removal - -
GO:0006605 protein targeting - -
GO:0007346 regulation of mitotic cell cycle - -
GO:0042254 ribosome biogenesis - -
GO:0023052 signaling - -
GO:0006399 tRNA metabolic process - -
GO:0006351 transcription, DNA-dependent - -
GO:0055085 transmembrane transport - -
GO:0007033 vacuole organization - -
GO:0016192 vesicle-mediated transport - -
GO:0006766 vitamin metabolic process - -

Template to type into Matrix GO:0006310 GO:0006281 GO:0006260 GO:0030437 GO:0005975 GO:0007155 GO:0006520 GO:0070882 GO:0016568 GO:0051276 GO:0007059 GO:0051186 GO:0000747 GO:0000910 GO:0002181 GO:0007010 GO:0007163 GO:0006091 GO:0006629 GO:0016071 GO:0007126 GO:0007005 GO:0071941 GO:0055086 GO:0006913 GO:0007031 GO:0030163 GO:0006461 GO:0006457 GO:0006486 GO:0051604 GO:0070647 GO:0006605 GO:0007346 GO:0042254 GO:0023052 GO:0006399 GO:0006351 GO:0055085 GO:0007033 GO:0016192 GO:0006766