Changes between Version 126 and Version 127 of MidoriCuratedPapers


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Timestamp:
Aug 18, 2015, 5:10:07 PM (6 years ago)
Author:
mah79
Comment:

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  • MidoriCuratedPapers

    v126 v127  
    264264||double mutants||in some cases "high temp" is a fudge for higher vs. lower within PECO "standard" range||
    265265
    266 [[BR]]
    267 
    268 ||PMID:19217403||
    269 ||if GO ever gets round to sorting out the "localized to bit of chromosome containing SO:nnn sequence feature", could add extension to GO:0000780||at SO:0001796 & SO:0001798||
    270 ||scm3-6 cnp1+ overexp||viable veg pop high temp||
    271 ||scm3-19 cnp1+ overexp||viable veg pop high temp||
    272 ||scm3-6 mis6-302||inviable veg pop std temp||
    273 ||scm3-19 mis6-302||inviable veg pop std temp||
    274 ||scm3-6 mis16-53||inviable veg pop std temp||
    275 ||scm3-19 mis16-53||inviable veg pop std temp||
    276 ||scm3-19 mis18-262||decr veg pop growth std temp expr med||
    277 ||scm3+ overexp cnp1-1||sens heat; slow veg pop growth std temp||
    278 ||scm3+ overexp mis6-302||sens heat; inviable veg pop std temp||
    279 ||scm3+ overexp mis12-537||sens heat||
    280 ||scm3+ overexp mis14-271||sens heat||
    281 ||scm3+ overexp mis15-68||sens heat; inviable veg pop std temp||
    282 ||scm3+ overexp mis16-53||sens heat; slow veg pop growth std temp||
    283 ||scm3+ overexp mis17-362||sens heat; slow veg pop growth std temp||
    284 ||scm3+ overexp mis18-262||sens heat; slow veg pop growth std temp||
    285 
    286 [[BR]]
    287 
    288 ||PMID:8041618||
    289 ||srp7-A154U srp54+ overexp||fypo:2060 high temp, yes+glycerol||
    290 ||srp7-TS-point (G107A,G112A) srp54+ overexp||fypo:2060 high temp, yes||
    291 ||srp7-G4C srp54+ overexp||fypo:81 expr low, high temp, yes+glycerol||
    292266
    293267[[BR]]
    294268
    295269||PMID:7969124||
    296 ||srp54 allele combinations||wt and mutant alleles on low-copy plasmids (cells otherwise haploid)||
    297 ||srp54+/T248N||decr veg gr fypo:1355 min med; expr low at low temp (growth normal at std or high temp)||
    298 ||srp54+/R194L||decr veg gr fypo:1355 min med; expr low at low or std temp; expr high at high temp||
    299 ||srp54+/K114R||decr veg gr fypo:1355 min med; expr low; expr high at high temp||
    300270||srp54 allele combinations||diploids, wt on one chromosome, mutant on high-copy plasmid||
    301271||srp54+/T248S|| decr veg gr fypo:1355 min med; expr low at low temp (growth normal at std or high temp)||
     
    316286
    317287[[BR]]
     288
    318289||PMID:10079327||
    319 ||srp54 allele combinations||wt and mutant alleles on low-copy plasmids (cells otherwise haploid)||
    320 ||srp54+/R194A,H195A||decr veg gr fypo:1355 min med; expr low at low temp, expr high at high temp (growth normal at std temp)||
    321 ||srp54+/E277A,H278A||decr veg gr fypo:1355 min med; expr low at high temp (growth normal at std or low temp)||
    322 ||srp54+/K314A,K315A||decr veg gr fypo:1355 min med; expr low at high temp (growth normal at std or low temp)||
    323 ||srp54+/K428A,K429A||decr veg gr fypo:1355 min med; expr low at high temp (growth normal at std or low temp)||
    324290||srp54 allele combinations||diploids, wt on one chromosome, mutant on high-copy plasmid||
    325291||srp54+/R194A,H195A||decr veg gr fypo:1355 min med; expr high at high or low temp (growth normal at std temp)||
     
    327293||srp54+/K314A,K315A||decr veg gr fypo:1355 min med; expr high at high temp (growth normal at std or low temp)||
    328294||srp54+/K428A,K429A||decr veg gr fypo:1355 min med; expr high at high temp (growth normal at std or low temp)||
    329 
    330 [[BR]]
    331 
    332 ||PMID:7700230||
    333 ||chk1delta cdc6-ts1||loss of viability at high temp fypo:1387 expr high YEA agar||
    334 ||chk1delta cdc6-ts2||fypo:1387 expr high YEA agar||
    335 ||chk1delta cdc6-ts3||fypo:1387 expr high YEA agar||
    336 ||chk1delta cdc20-M10||fypo:1387 expr low YEA agar||
    337 ||chk1delta cdc18-K46||fypo:1387 expr high YEA agar||
    338 ||chk1delta cdc18-K46||fypo:1387 expr high YEA liquid||
    339 ||chk1delta cdc6-ts1||mitotic catastrophe with cut, normal size cell fypo:1053 high temp||
    340 ||chk1delta cdc6-ts2||fypo:1053 high temp||
    341 ||chk1delta cdc6-ts3||fypo:1053 high temp||
    342 ||chk1delta cdc20-M10||fypo:1053 high temp||
    343 ||chk1delta cdc18-K46||fypo:1053 high temp||
    344 ||chk1delta cdc18-K46||fypo:1053 high temp||
    345 ||chk1delta cdc6-ts1||DNA content decreased during veg fypo:453 or add child for "less than 1C" facs high temp||
    346 ||chk1delta cdc6-ts2||fypo:453 or add child for "less than 1C" facs high temp||
    347 ||chk1delta cdc6-ts3||fypo:453 or add child for "less than 1C" facs high temp||
    348 ||chk1delta cdc20-M10||fypo:453 or add child for "less than 1C" facs high temp||
    349 ||chk1delta cdc18-K46||fypo:453 or add child for "less than 1C" facs high temp||
    350 ||chk1delta cdc18-K46||fypo:453 or add child for "less than 1C" facs high temp||
    351295
    352296
     
    371315||can also add myh1 chromatin binding in_presence_of phleomycin|| ChEBI:75044||
    372316
    373 
    374 [[BR]]
    375 
    376 ||PMID:23041194||
    377 ||scs2delta scs22delta||abnormal ER localization fypo:2872 micr expr high||
    378 ||scs2delta scs22delta for3delta||stubby cell; abnormal ER localization fypo:2872 micr||
    379 ||scs2delta scs22delta for3delta myo51delta myo52delta||stubby cell; abnormal ER localization fypo:2872 micr||
    380 ||tts1delta rtn1delta yop1delta||misoriented septum||
    381 ||tts1delta rtn1delta yop1delta||abol prot loc med cortex fypo:1371 a_u mid2||
    382 ||tts1delta rtn1delta yop1delta scs2delta scs22delta||normal septum orientation fypo:2873||
    383 ||scs2delta scs22delta|| advanced prot loc med cortex fypo:2874 a_u mid2||
    384 ||scs2delta scs22delta tts1delta rtn1delta yop1delta||normal prot loc med cortex fypo:2558 a_u mid2||
    385 
    386 [[BR]]
    387 
    388 ||PMID:22496451||
    389 ||ppd1delta prz1 overexp||same increased txn & slow growth as prz1 overexp alone||
    390 ||prz1 overexp + rad24 overexp||normal veg cell pop growth||
    391 ||prz1 overexp + rad25 overexp||normal veg cell morph (same cond as single mutant); normal veg cell pop growth||
    392 ||prz1 overexp + pac1 overexp||normal veg cell morph (same cond as single mutant)||
    393 ||prz1 overexp + ape2 overexp||spheroid fypo:21, same cond but lower expressivity (use med fypo_ext:2)||
    394 ||prz1 overexp + tfs1 overexp||spheroid fypo:21, same cond but lower expressivity (use med fypo_ext:2)||
    395 ||prz1 overexp + pka1 overexp||elongated branched veg cell||
    396 ||prz1 overexp + msn5 overexp||elongated branched veg cell||
    397 ||rad24delta + rad25 overexp||normal on tacrolimus fypo:1470||
    398 
    399 [[BR]]
    400 
    401 ||PMID:23211746||
    402 ||chk1-E472D ast1 overexp||normal on MMS high temp||
    403 ||chk1-E472D ast1 overexp||normal prot phos during dna damage fypo:2899||
    404 ||chk1-E472D ast1ND overexp||sens to MMS high temp (ast1ND = D158A, D160A, D179A, D181A)||
    405 ||chk1-D155A ast1 overexp||sens to MMS std temp||
    406 ||chk1delta ast1delta||sens to MMS std temp (same as chk1delta alone||
    407 ||chk1delta ast1delta||sens to UV std temp (same as chk1delta alone||
    408 ||rad2delta exo1delta||inviable elong veg cells (note: viable at 2 days, but die later)||
    409 ||rad2delta exo1delta chk1delta||inviable elong veg cells||
    410 ||rad2delta exo1delta chk1delta||cut||
    411 ||rad2delta exo1delta ast1delta||cut||
    412 ||rad2delta exo1delta ast1delta||inviable microcolony elong||
    413 ||exo1delta ast1delta||same MMS sens, same Chk1 phosphorylation as exo1delta alone||
    414 ||rad2delta ast1delta||same MMS sens, same Chk1 phosphorylation as rad2delta alone||
    415 ||exo1-so rad2delta||inviable veg pop||
    416 ||exo1-so rad2delta ast1delta||inviable veg pop||
    417 ||exo1-so rad2delta||fypo:12||
    418 ||exo1-so rad2delta||abnormal DNA damage checkpoint during cellular response to UV fypo:2900||
    419 ||exo1-so rad2delta ast1delta||fypo:2102||
    420 ||exo1-so rad2delta ast1delta||fypo:141 expr low||
    421 ||exo1-so rad2delta chk1delta||fypo:141 expr high||
    422 ||exo1-so rad2delta chk1-S345A||fypo:141 expr med||
    423 ||exo1-so rad2delta||abol prot phos DNA damage fypo:2898 a_u chk1||
    424 ||exo1-so rad2delta ast1delta||decr prot phos DNA damage fypo:2897 a_u chk1||
    425 ||ast1delta rad32delta||sens to MMS||
    426 ||ast1delta rad32delta pku70delta||normal on MMS||
    427 ||exo1delta rad32delta||sens to MMS||
    428 ||exo1delta rad32delta pku70delta||sens to MMS||
    429 ||exo1-so rad2delta||fypo:2474 a_u RPA, rad51||
    430 ||exo1-so rad2delta ast1delta||fypo:2474 a_u RPA, rad51||
    431 ||exo1-so rad2delta ast1delta||fypo:2553 (could add decreased GO:0010792 if they want it that specific) southern blot||
    432317
    433318[[BR]]