| Version 33 (modified by , 9 years ago) (diff) |
|---|
transferred from CuratorTrainingPapers
Additions that will require new curation sessions (longer-term)
| 21813639 | open new session to add these when supported | |
| mcb1 | GO:0005737 | extension: throughout cell cycle (see nuclear pore/PMID:20970342 above) |
| mcb1 | GO:0005654 | extension: throughout cell cycle |
| mcb1 | GO:0000790 | extension: throughout cell cycle |
| mcb1-chk1 genetic interaction | alleles OP-mcb1+chk1-deletion, mcb1-D2+chk1-deletion; mcb1-D22+chk1-deletion | OP-mcb1+chk1-del phenotype small cells (FYPO:23), abnormal nuc morph (FYPO:62) |
| mcb1-rad3 genetic interaction | alleles OP-mcb1+rad3-deletion, mcb1-D2+rad3-deletion; mcb1-D22+rad3-deletion | OP-mcb1+rad3-del phenotype small cells (FYPO:23), abnormal nuc morph (FYPO:62) |
| 20929775 | open new session to add these when supported | |
| hht1,hht2,hht3 | all 3 T3A (triple mutant) | phenotype decreased prot loc to cen (extension: Ark1); lagging chromosomes (qualifier=low expressivity) |
| hta1,hta2 | both S121A (triple mutant) | phenotype decreased prot loc to cen (extension: Ark1); lagging chromosomes (qualifier=low expressivity) |
| hht1,hht2,hht3,sgo2del | all 3 hht T3A + sgo2del (quadruple mutant) | phenotypes abolished loc to cen (ext Ark1); lagging chromosomes (qualifier=high expressivity) |
| hht1,hht2,hht3, hta1,hta2 | all 3 H3 T3A, both H2 S121A (quintuple mutant) | phenotypes abolished loc to cen (ext Ark1); lagging chromosomes (qualifier=high expressivity) |
| hht1,hht2,hht3 | all 3 T3A (triple mutant) | genetic interaction synthetic lethal sgo2deletion |
| hht1,hht2,hht3, hta1,hta2 | all 3 H3 T3A, both H2 S121A (quintuple mutant) | genetic interaction synthetic lethal |
| hht1,hht2,hht3, hta1,hta2 | all 3 H3 T3A, both H2 S121A (quintuple mutant) | genetic interaction synthetic lethal |
| genetic interaction | hrk1, swi6 | "asynthetic"; check for old same-pathway GO IGI |
| hht1,hht2,hht3 | all 3 T3A (triple mutant) | genetic interaction "asynthetic" with hrk1deletion |
| Hrk1-Bir1 | physical interaction | BIR domain of Bir1 (Pfam:PF00653) |
| hrk1 bub1 genetic interaction | alleles hrk1 deletion; bub1-KD (kinase dead, K762R,D900N) | phenotype slow growth |
| hrk1 sgo2 genetic interaction | alleles both deletion | phenotype slow growth |
| pds5 bub1 genetic interaction | alleles pds5 deletion; bub1-KD (kinase dead, K762R,D900N) | phenotype slow growth |
| pds5 sgo2 genetic interaction | alleles both deletion | phenotype slow growth |
| swi6 sgo2 genetic interaction | alleles both deletion | phenotype slow growth |
| 21620704 | open new session to add these when supported | |
| dip1 wsp1 genetic int | alleles both deletion | phenotypes: abnormal protein localization to actin cortical patch (crn1), abolished actin cortical patch internalization |
| how on earth to annotate anything based on figure 6? |
| PMID:21971174 | new session for these |
| cdt1 allele=noname(overexpression) mcm6-S1(E824G, D825N) | normal ds break repair (FYPO:new) |
| cdc18 allele=noname(overexpression) mcm6-S1(E824G, D825N) | normal ds break repair (FYPO:new) |
| cig2delta(deletion) sup) mcm6-S1(E824G, D825N) | normal ds break repair (FYPO:new) |
| PMID:8895665 | new session |
| orc1 cdc30-4(unknown) | update FYPO:217 evidence to PFGE when available |
| orc1/cdc30-4(unknown) + cdc18-K46(unknown) double mutant | FYPO:173 ev:microscopy |
| PMID:1454522 | new session |
| mcm4 cdc21noname(unknown) | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO |
| PMID:6887244 | long-term note (new session) |
| additional note | 3 of 13 cold-sensitive mutants curated; if someone can figure out what genes the other 10 correspond to, we can annotate a few more phenotypes |
| PMID:8298187 | new session? or not in tool? |
| note | add mcm2 allele synonym nda1-376 = nda1-KM376; also nda1delta = mcm2delta, nda4delta = mcm5delta |
| PMID:1934126 | new session |
| cdc25-22(unknown) wee1-50(unknown) double mutant | FYPO:681 same as cdc25-22(unknown) single mutant |
| cdc25-22(unknown) cdc2-1w(unknown) double mutant | FYPO:681 same as cdc25-22(unknown) single mutant |
| cdc25-22(unknown) adh.nim1(overexpresssion) double mutant | FYPO:681 same as cdc25-22(unknown) single mutant |
| cdc25-22(unknown) wee1-50(unknown) win1noname(unknown) triple mutant | FYPO:681 same as cdc25-22(unknown) single mutant |
| cut1noname(unknown) cut2noname(unknown) double mutant | FYPO:681 ev: microscopy |
| PMID:7865880 | new session | |
| allele=mis1-64(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis1-223(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis3-224(unknown),condition=PCO:0000005,condition=PCO:0000004 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis4-242(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis5-268(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis6-302(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis10-421(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| prp2 allele=mis11-453(unknown),condition=PCO:0000005 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis12-537(unknown),condition=PCO:0000005,condition=PCO:0000004 | FYPO:786 change 'other' evidence to plasmid maintenance assay when in ECO | |
| allele=mis5-268(unknown),condition=PCO:0000004 | FYPO:217 change 'other' evidence to PFGE when in ECO | |
| mcm6 allele=mis5-268(unknown) + mcm4 cdc21noname(unknown) | fypo:316 ev: cell growth | |
| other stuff | mis2, mis2 mis8, mis9 all apparently uncloned, so don't know which gene they correspond to | |
| mis2 ?gene | FYPO:786 ev: plasmid maint assay (or "other" if still waiting for ECO) | allele=mis2-87(unknown),condition=PCO:0000005,condition=PCO:0000004 | allele=mis2-197(unknown),condition=PCO:0000004 |
| mis7 ?gene | FYPO:786 ev: plasmid maint assay (or "other" if still waiting for ECO) | allele=mis7-322(unknown),condition=PCO:0000005 |
| mis8 ?gene | FYPO:786 ev: plasmid maint assay (or "other" if still waiting for ECO) | allele=mis8-341(unknown),condition=PCO:0000005,condition=PCO:0000004 |
| mis9 ?gene | FYPO:786 ev: plasmid maint assay (or "other" if still waiting for ECO) | allele=mis9-356(unknown),condition=PCO:0000005 |
| PMID:8631307 | open new session to add these when supported |
| mcm4 | GO:0005634 extension: throughout cell cycle |
| cdc21-M68(unknown) cdc2-3w(unknown) double mutant | FYPO:609 ev: microscopy |
| cdc21-M68(unknown) mcm4 C-terminus overexpression [note: overexp piece from BamHI site -- need position -- to end | fypo:49 |
| cdc21-M68(unknown) rad1noname(unknown) double mutant | FYPO:23 FYPO:337 both ev: microscopy |
| PMID:19197239 | new session |
| top1delta tdp1delta | FYPO: sensitive to camptothecin ev. cell growth |
| 8838655 | new session | |
| mcm2 | GO:0005634 | extension: throughout cell cycle |
| mcm5 | GO:0005634 | extension: throughout cell cycle |
Additions to existing sessions (short wait for whatever's needed)
