Changes between Version 16 and Version 17 of Modification


Ignore:
Timestamp:
Jan 27, 2015, 2:07:51 PM (6 years ago)
Author:
vw253
Comment:

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  • Modification

    v16 v17  
    2525  * make sure that you request a pro ID for the shorter form, and put this in an annotation_extension has_direct_input(PR:xxxxx) so that the residues you specify matches the molecule in this extension.
    2626 
    27  * See [wiki:AnnotationExtensionSyntax AnnEx Syntax] and [wiki:DescribingResidues describing residues modified or mutated] for "residue=" syntax
     27 * See [wiki:AnnotationExtensionSyntax AnnEx Syntax]  for the full syntax for compound and independent annotations
    2828
    29  * For annotations which involve a "target gene" of this type which are not "protein modification" annotations we only capture the  target gene as an annotation extension, and the reciprocal annotation  (gene B is TARGET_OF Gene A) will be inferred later
     29  * See [wiki:DescribingResidues describing residues modified or mutated] for "residue=" syntax (NOTE I THINK WE SHOULD REMOVE THE STUFF ABOUT MODIFICATION RESIDUE SYNTAX FROM THIS PAGE)
     30
     31 ****I DON"T UNDERSTSTAND THIS COMMENT For annotations which involve a "target gene" of this type which are not "protein modification" annotations we only capture the  target gene as an annotation extension, and the reciprocal annotation  (gene B is TARGET_OF Gene A) will be inferred later
    3032