Changes between Version 40 and Version 41 of Modification


Ignore:
Timestamp:
Jan 27, 2015, 3:54:22 PM (6 years ago)
Author:
vw253
Comment:

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  • Modification

    v40 v41  
    88 
    99||Usage ||Relation || Syntax (Example) ||Notes||
    10 ||data shows the identity of the modifier||added_by ||added_by(wee1) ||ensure that you have annotated the  modifier with the molecular fiunction and substrate||
     10||data shows the identity of the modifier||added_by ||added_by(wee1)*||ensure that you have annotated the  modifier with the molecular fiunction and substrate||
    1111||data shows identity of modification remover||removed_by ||removed_by(cdc25)||ensure that you have annotated the  modifier with the molecular fiunction and substrate||
    1212||data shows "active" addition  at a certain time||added_during ||removed_during(GO:0000080)||GO IDs are [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0000279#term=ancchart phases]  or processes||
     
    1717||-||required_for ||example required||-||
    1818
    19 
     19* this information will be used to add a reciprocal "Target_of" annotation to the wee1 gene page
    2020
    2121 === Capturing information about the modified residue(s)  ===
     
    2828  * I DON"T UNDERSTAND THIS COMMENT make sure that you request a pro ID for the shorter form, and put this in an annotation_extension has_direct_input(PR:xxxxx) so that the residues you specify matches the molecule in this extension.
    2929 
    30  ===  Detiled syntax for compound vs. independent annotations ===
     30 ===  Detialed syntax for compound vs. independent annotations ===
    3131
    3232  * See [wiki:AnnotationExtensionSyntax AnnEx Syntax] 
     
    3434  * See [wiki:DescribingResidues describing residues modified or mutated] for "residue=" syntax (NOTE I THINK WE SHOULD REMOVE THE STUFF ABOUT MODIFICATION RESIDUE SYNTAX FROM THIS PAGE)
    3535
    36  ****I DON"T UNDERSTSTAND THIS COMMENT For annotations which involve a "target gene" of this type which are not "protein modification" annotations we only capture the  target gene as an annotation extension, and the reciprocal annotation  (gene B is TARGET_OF Gene A) will be inferred later
    3736