Changes between Version 48 and Version 49 of Modification


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Timestamp:
Jan 27, 2015, 4:10:34 PM (7 years ago)
Author:
vw253
Comment:

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  • Modification

    v48 v49  
    2626  * the residues numbers apply to the precursor translation, except for histones which are numbered assuming removal of the initiator methionine
    2727
     28  * By default residues reported will refer to the full length trasnlation. if the residues numbers you report refer to a modified (shortened) form (as in the case of histones) of the translation make sure that you request a pro ID for the shorter form, and put this in an annotation_extension has_direct_input(PR:xxxxx) so that the residues you specify matches the molecule in this extension.
     29 
    2830  * See [wiki:DescribingResidues describing residues modified or mutated] for "residue=" syntax  for more details of the residue describing syntax
    2931
    30   * By default residues reported will refer to the full length trasnlation. if the residues numbers you report refer to a modified (shortened) form (as in the case of histones) of the translation make sure that you request a pro ID for the shorter form, and put this in an annotation_extension has_direct_input(PR:xxxxx) so that the residues you specify matches the molecule in this extension.
    31  
    3232 ==  Syntax for  structuring compound vs. independent annotations ==
    3333