Ontologies used for extensions

ontology	abbr	tracker URL
​Cell Ontology	CL	​https://github.com/obophenotype/cell-ontology/issues
​CHEBI	CHEBI	​https://sourceforge.net/p/chebi/curator-requests/
​Gene Ontology	GO	​https://github.com/geneontology/go-ontology/issues
​PATO	PATO	​https://github.com/gkoutos/pato/issues/
​Pfam	Pfam	N/A, but contact helpdesk - pfam-help at sanger.ac.uk
​Protein Ontology	PR	​http://sourceforge.net/p/pro-obo/term-requests/
​PSI-MOD	MOD	​http://sourceforge.net/p/psidev/mod-controlled-vocab-changes/
​Sequence Ontology	SO	​https://github.com/The-Sequence-Ontology/SO-Ontologies/issues

An example of each relation used should be added here:

ListOfRelationsForGO

For some ontologies, terms used should be added to the collection of ontology subsets that we maintain (as a /mini-ontologies/ sub-directory of the pombe-embl svn repository)

• chebi.obo
• pato.obo
• cl.obo

For these ontologies please edit the is_a parent to point to PATO:0000001 ("quality"), CL:0000000 ("cell"), or CHEBI:24431 ("chemical entity") as appropriate.