Changes between Version 3 and Version 4 of OntologiesInUse


Ignore:
Timestamp:
Apr 2, 2012, 12:49:40 PM (9 years ago)
Author:
val_wood
Comment:

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  • OntologiesInUse

    v3 v4  
    1 Ontologies used for extensions other than GO and GeneDB
     1Ontologies used for extensions
    22
    3 ||'''ontology'''||'''abbr'''||'''relations used (so far) in conjuction with ontology'''||
    4 ||Cell Ontology||CL||occurs_in||
    5 ||CHEBI||CHEBI||has_substrate,in_presence_of,in_absence_of||
    6 ||PSI-MOD||MOD||requires_feature||
    7 ||Sequence Ontology||SO||acts_at||
    8 ||PFAM||PF||localizes||
     3||'''ontology'''||'''abbr'''||URL||'''relations used (so far) '''||
     4||Cell Ontology||CL||Cell ontology||https://sourceforge.net/tracker/?group_id=76834&atid=925065 ||occurs_in||
     5||CHEBI||CHEBI||-||has_substrate,in_presence_of,in_absence_of||
     6||PSI-MOD||MOD||-||requires_feature||
     7||Sequence Ontology||SO||-||acts_at||
     8||PFAM||PF||localizes||-||
     9||PATO|| ||-||-||
    910
    1011
    1112
     13
     14
     15
     16For now we there is a subdirectory in the pombe-embl subversion repository
     17called "mini-ontologies" with three files:
     18  chebi.obo
     19  pato.obo
     20  cl.obo
     21
     22If you add a term to one of these files, please edit the isa to point
     23to PATO:0000001 ("quality"), CL:0000000 ("cell") or CHEBI:24431
     24("chemical entity") as appropriate.
     25